# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_11 - 203 GerE PF00196.14 58 0.00018 12.2 0.1 1 1 1.1e-05 0.00036 11.3 0.1 11 35 168 192 166 196 0.94 # 6936 # 7544 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_14 - 554 Peptidase_M56 PF05569.6 299 1.3e-87 284.9 13.3 1 1 8e-89 2.7e-87 283.8 13.3 32 299 2 266 1 266 0.99 # 8883 # 10544 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.262 1_5 - 68 TIGR01978 TIGR01978 243 2e-07 21.7 0.8 1 1 6.3e-09 2.1e-07 21.6 0.8 158 208 4 54 1 61 0.91 # 3232 # 3435 # -1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_4 - 71 Phage_CI_repr PF07022.8 66 2.5e-07 22.2 0.0 1 1 9e-09 3.1e-07 21.9 0.0 16 62 4 50 1 52 0.87 # 2801 # 3013 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.305 1_5 - 68 AAA_13 PF13166.1 712 1.6e-06 18.2 0.3 1 1 5.2e-08 1.8e-06 18.0 0.3 527 578 8 57 3 65 0.92 # 3232 # 3435 # -1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_12 - 193 MarR_2 PF12802.2 62 1.6e-05 16.0 0.0 1 2 0.0047 0.16 3.2 0.1 23 45 112 134 78 137 0.90 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_12 - 193 MarR_2 PF12802.2 62 1.6e-05 16.0 0.0 2 2 2.3e-05 0.00077 10.6 0.0 7 45 149 184 144 187 0.89 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_4 - 71 HTH_17 PF12728.2 51 0.00012 13.7 0.0 1 1 5.1e-06 0.00017 13.2 0.0 5 22 4 21 3 39 0.85 # 2801 # 3013 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.305 1_4 - 71 HTH_19 PF12844.2 64 2.1e-11 35.2 0.0 1 1 8e-13 2.7e-11 34.8 0.0 16 61 4 49 3 51 0.95 # 2801 # 3013 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.305 1_12 - 193 Sigma70_r4_2 PF08281.7 54 0.00031 11.7 0.0 1 1 1.6e-05 0.00056 10.8 0.0 10 48 144 182 143 183 0.86 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_12 - 193 Mga PF05043.8 87 1.6e-07 23.0 0.6 1 2 0.007 0.24 3.2 0.1 24 52 104 132 74 137 0.83 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_12 - 193 Mga PF05043.8 87 1.6e-07 23.0 0.6 2 2 1.8e-07 6.2e-06 17.9 0.1 16 56 147 186 143 187 0.94 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_4 - 71 DUF1323 PF07037.6 122 0.00015 13.4 0.0 1 1 5.6e-06 0.00019 13.0 0.0 1 22 1 22 1 30 0.88 # 2801 # 3013 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.305 1_4 - 71 HTH_31 PF13560.1 64 1.2e-06 20.2 0.0 1 1 4.3e-08 1.5e-06 19.8 0.0 18 57 4 42 3 49 0.93 # 2801 # 3013 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.305 1_12 - 193 HTH_22 PF13309.1 64 3.7e-08 24.5 0.4 1 2 0.084 1.4 0.2 0.0 23 38 70 85 64 85 0.85 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_12 - 193 HTH_22 PF13309.1 64 3.7e-08 24.5 0.4 2 2 4.8e-08 8.1e-07 20.2 0.1 12 64 136 182 128 182 0.82 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_11 - 203 HTH_22 PF13309.1 64 1e-07 23.1 1.2 1 3 0.054 0.92 0.8 0.0 23 38 71 86 62 95 0.84 # 6936 # 7544 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_11 - 203 HTH_22 PF13309.1 64 1e-07 23.1 1.2 2 3 0.0011 0.019 6.2 0.2 2 41 108 147 107 149 0.93 # 6936 # 7544 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_11 - 203 HTH_22 PF13309.1 64 1e-07 23.1 1.2 3 3 8.8e-06 0.00015 12.9 0.0 43 61 176 194 171 195 0.94 # 6936 # 7544 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 5_1 - 231 MULE PF10551.4 93 6.9e-05 14.4 0.1 1 1 5.9e-06 0.0002 13.0 0.0 19 78 98 154 83 171 0.82 # 61 # 753 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 4_1 - 124 Thioredoxin_2 PF13098.1 112 4.5e-10 31.2 0.0 1 1 1.8e-11 6.3e-10 30.7 0.0 4 102 28 112 25 118 0.73 # 267 # 638 # 1 # ID=4_1;partial=00;start_type=TTG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.261 1_12 - 193 HTH_36 PF13730.1 55 8.9e-05 14.0 0.1 1 1 5.5e-06 0.00019 13.0 0.1 28 49 163 184 145 186 0.93 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_13 - 127 Penicillinase_R PF03965.11 115 1.3e-37 119.8 1.3 1 1 4.3e-39 1.5e-37 119.7 1.3 1 114 8 121 8 122 0.99 # 8513 # 8893 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.247 5_1 - 231 AAA_17 PF13207.1 121 7.8e-05 14.9 0.7 1 1 4e-06 0.00013 14.2 0.7 23 112 30 127 26 178 0.80 # 61 # 753 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 2_3 - 116 HTH_34 PF13601.1 80 0.00012 13.5 0.2 1 1 5.4e-06 0.00018 12.9 0.2 2 49 44 91 43 96 0.93 # 459 # 806 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.256 1_11 - 203 HTH_29 PF13551.1 112 1.6e-06 19.7 0.2 1 1 5.2e-07 8.9e-06 17.3 0.1 4 34 168 197 166 199 0.91 # 6936 # 7544 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_12 - 193 HTH_29 PF13551.1 112 2.6e-06 19.0 0.9 1 2 0.018 0.31 2.7 0.2 32 69 121 156 118 159 0.73 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_12 - 193 HTH_29 PF13551.1 112 2.6e-06 19.0 0.9 2 2 3.1e-06 5.2e-05 14.8 0.0 7 39 156 187 151 190 0.91 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_13 - 127 MarR PF01047.17 59 5.2e-09 27.2 0.1 1 1 5.3e-10 9.1e-09 26.4 0.1 1 54 8 65 8 65 0.97 # 8513 # 8893 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.247 1_12 - 193 MarR PF01047.17 59 0.00021 12.4 0.1 1 1 3.3e-05 0.00056 11.1 0.0 1 41 145 184 145 188 0.89 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 2_3 - 116 HTH_20 PF12840.2 61 2.1e-05 15.7 0.0 1 1 7.7e-07 2.6e-05 15.4 0.0 15 57 48 89 34 93 0.87 # 459 # 806 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.256 1_12 - 193 RuvB_C PF05491.8 76 0.00022 12.3 0.4 1 2 0.038 1.3 0.2 0.1 55 67 121 133 117 139 0.82 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_12 - 193 RuvB_C PF05491.8 76 0.00022 12.3 0.4 2 2 8.6e-05 0.0029 8.7 0.0 6 43 145 178 142 182 0.86 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 2_3 - 116 HTH_5 PF01022.15 47 1.3e-17 54.6 1.6 1 1 1.4e-18 2.3e-17 53.9 1.6 1 45 41 86 41 88 0.95 # 459 # 806 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.256 1_12 - 193 HTH_5 PF01022.15 47 0.00013 13.1 0.0 1 1 1.4e-05 0.00024 12.2 0.0 5 42 150 187 147 188 0.86 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_12 - 193 Terminase_5 PF06056.7 58 0.00022 12.2 0.1 1 1 1.2e-05 0.00042 11.3 0.1 7 36 154 183 153 189 0.91 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_12 - 193 HTH_24 PF13412.1 48 2.6e-10 31.0 0.2 1 1 1.3e-11 4.6e-10 30.2 0.2 1 41 145 184 145 188 0.96 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_5 - 68 AAA_21 PF13304.1 303 3.6e-07 21.7 0.1 1 1 1.2e-08 4.2e-07 21.5 0.1 253 301 7 52 2 54 0.87 # 3232 # 3435 # -1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_12 - 193 HTH_AsnC-type PF13404.1 42 0.00012 13.0 0.0 1 1 7.3e-06 0.00025 12.0 0.0 3 41 147 184 145 185 0.87 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 5_1 - 231 DDE_Tnp_IS240 PF13610.1 140 2e-43 139.1 1.4 1 1 8.9e-45 3e-43 138.5 1.4 3 139 78 209 76 210 0.95 # 61 # 753 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 1_2 - 51 HTH_13 PF11972.3 54 0.00011 13.4 0.1 1 1 3.8e-06 0.00013 13.3 0.1 15 39 10 34 3 43 0.89 # 1040 # 1192 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.203 1_12 - 193 HTH_IclR PF09339.5 52 8.8e-05 13.5 0.0 1 1 6.7e-06 0.00023 12.2 0.0 7 43 151 185 150 188 0.85 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_11 - 203 HTH_7 PF02796.10 45 1.1e-23 74.3 1.3 1 1 1.2e-24 1.4e-23 74.0 0.2 1 44 147 198 147 199 0.95 # 6936 # 7544 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_12 - 193 HTH_7 PF02796.10 45 2.7e-20 63.5 0.2 1 1 5.1e-21 5.7e-20 62.4 0.2 1 44 140 183 140 184 0.98 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_2 - 51 HTH_7 PF02796.10 45 0.00015 13.0 0.6 1 1 2.8e-05 0.00031 12.0 0.1 23 38 10 25 9 26 0.94 # 1040 # 1192 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.203 1_12 - 193 HTH_DeoR PF08220.7 57 2.6e-05 15.1 0.0 1 1 3.5e-06 6e-05 14.0 0.0 16 41 162 187 149 189 0.83 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_13 - 127 HTH_DeoR PF08220.7 57 0.00027 11.9 0.3 1 1 6.9e-05 0.0012 9.9 0.1 8 46 18 60 14 62 0.76 # 8513 # 8893 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.247 1_12 - 193 Phage_antitermQ PF06530.7 126 0.00028 11.9 0.0 1 2 0.021 0.72 0.9 0.0 52 95 58 101 37 112 0.83 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_12 - 193 Phage_antitermQ PF06530.7 126 0.00028 11.9 0.0 2 2 8.1e-05 0.0027 8.7 0.0 62 101 144 183 141 189 0.90 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_18 - 163 Peptidase_M50 PF02163.17 192 0.037 4.3 11.1 1 1 0.0036 0.12 2.6 11.1 117 142 35 119 8 124 0.66 # 14860 # 15348 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.188 1_11 - 203 HTH_23 PF13384.1 50 1.9e-09 28.4 0.5 1 1 5.5e-10 3.7e-09 27.5 0.1 4 40 162 198 159 202 0.88 # 6936 # 7544 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_12 - 193 HTH_23 PF13384.1 50 2.6e-08 24.8 0.0 1 1 9e-09 6.1e-08 23.6 0.0 13 42 156 185 150 190 0.86 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 5_1 - 231 HTH_23 PF13384.1 50 7.1e-05 13.9 0.3 1 1 0.0001 0.0007 10.7 0.1 29 41 48 60 47 64 0.93 # 61 # 753 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 1_2 - 51 HTH_23 PF13384.1 50 0.00011 13.3 0.0 1 1 2.3e-05 0.00016 12.8 0.0 18 39 9 30 1 35 0.83 # 1040 # 1192 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.203 1_4 - 71 HTH_23 PF13384.1 50 0.00024 12.2 0.0 1 1 6.7e-05 0.00045 11.3 0.0 21 38 4 21 3 27 0.86 # 2801 # 3013 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.305 1_12 - 193 UPF0122 PF04297.9 101 0.0001 13.8 0.1 1 1 8.1e-06 0.00027 12.4 0.0 19 59 146 186 142 190 0.86 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_13 - 127 S-AdoMet_synt_M PF02772.11 120 0.00019 12.8 1.9 1 2 1.4e-05 0.00048 11.5 1.2 64 106 21 62 3 74 0.78 # 8513 # 8893 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.247 1_13 - 127 S-AdoMet_synt_M PF02772.11 120 0.00019 12.8 1.9 2 2 0.045 1.5 0.2 0.0 64 90 89 115 70 126 0.62 # 8513 # 8893 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.247 1_12 - 193 HTH_11 PF08279.7 55 3.8e-09 27.6 0.1 1 1 7.8e-10 8.9e-09 26.4 0.1 4 41 151 186 147 189 0.81 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_2 - 51 HTH_11 PF08279.7 55 2.1e-05 15.6 0.0 1 1 2.1e-06 2.4e-05 15.4 0.0 19 40 12 33 6 45 0.88 # 1040 # 1192 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.203 1_11 - 203 HTH_11 PF08279.7 55 9.1e-05 13.5 0.1 1 1 3e-05 0.00034 11.7 0.1 18 34 178 194 166 195 0.80 # 6936 # 7544 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_4 - 71 P22_Cro PF14549.1 60 2e-05 15.7 0.0 1 1 9e-07 3.1e-05 15.1 0.0 14 30 5 21 3 29 0.88 # 2801 # 3013 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.305 1_11 - 203 HTH_28 PF13518.1 52 1.4e-08 26.1 0.1 1 1 3.3e-09 3.8e-08 24.7 0.1 4 34 167 197 166 198 0.94 # 6936 # 7544 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_12 - 193 HTH_28 PF13518.1 52 1.3e-05 16.6 0.0 1 1 2.9e-06 3.3e-05 15.3 0.0 8 38 156 186 152 189 0.93 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 5_1 - 231 HTH_28 PF13518.1 52 0.00016 13.1 2.9 1 1 1.7e-05 0.0002 12.8 0.7 14 36 36 60 23 61 0.85 # 61 # 753 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 1_12 - 193 HTH_Tnp_4 PF13613.1 53 0.00022 12.2 0.0 1 1 1.3e-05 0.00044 11.2 0.0 24 43 165 184 159 186 0.88 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_6 - 84 Anp1 PF03452.9 270 0.00011 12.8 0.0 1 1 3.3e-06 0.00011 12.7 0.0 58 108 15 64 3 70 0.88 # 3927 # 4178 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.278 1_11 - 203 CENP-B_N PF04218.8 53 6.4e-08 23.4 3.1 1 2 0.00037 0.013 6.4 0.3 13 35 117 139 115 142 0.85 # 6936 # 7544 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_11 - 203 CENP-B_N PF04218.8 53 6.4e-08 23.4 3.1 2 2 1.6e-07 5.3e-06 17.2 0.2 14 46 167 199 166 200 0.91 # 6936 # 7544 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 2_4 - 206 Virul_fac_BrkB PF03631.10 260 0.0015 9.2 23.5 1 2 7.7e-06 0.00026 11.7 7.6 166 235 11 79 1 81 0.84 # 825 # 1442 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 2_4 - 206 Virul_fac_BrkB PF03631.10 260 0.0015 9.2 23.5 2 2 0.0021 0.073 3.7 8.0 115 180 135 191 107 193 0.63 # 825 # 1442 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_3 - 67 Seryl_tRNA_N PF02403.17 108 0.0003 12.2 6.1 1 1 9.1e-06 0.00031 12.2 6.1 31 89 5 64 1 66 0.87 # 1185 # 1385 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.229 4_1 - 124 Thioredoxin PF00085.15 104 0.0002 12.5 0.0 1 1 1.8e-05 0.00063 10.9 0.0 28 93 38 114 13 122 0.70 # 267 # 638 # 1 # ID=4_1;partial=00;start_type=TTG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.261 1_5 - 68 AAA_15 PF13175.1 415 2.3e-05 14.9 0.0 1 1 7.7e-07 2.6e-05 14.7 0.0 371 411 10 49 5 53 0.90 # 3232 # 3435 # -1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_12 - 193 TetR_N PF00440.18 47 0.00015 12.8 0.1 1 1 1.7e-05 0.00058 11.0 0.0 16 36 160 180 158 180 0.92 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 5_1 - 231 rve PF00665.21 120 1.6e-16 51.9 0.4 1 1 1.4e-17 4.9e-16 50.3 0.2 4 117 74 180 71 182 0.87 # 61 # 753 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 1_12 - 193 HTH_Mga PF08280.6 59 0.0002 12.5 1.3 1 1 9.4e-06 0.00032 11.9 0.5 2 44 144 185 143 187 0.91 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 5_1 - 231 HTH_Tnp_1 PF01527.15 76 0.00033 12.1 0.3 1 1 1.9e-05 0.00066 11.1 0.3 24 47 35 60 11 79 0.79 # 61 # 753 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 1_4 - 71 Phage_terminase PF10668.4 60 3.6e-05 14.9 0.1 1 1 1.4e-06 4.7e-05 14.6 0.1 25 47 3 25 1 34 0.89 # 2801 # 3013 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.305 1_12 - 193 HTH_38 PF13936.1 44 2.4e-06 18.5 0.0 1 1 3.6e-07 6.1e-06 17.2 0.0 13 41 153 181 143 183 0.86 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_11 - 203 HTH_38 PF13936.1 44 9e-06 16.7 2.2 1 1 8.3e-07 1.4e-05 16.0 0.2 15 39 170 194 160 195 0.93 # 6936 # 7544 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_11 - 203 Sigma70_r4 PF04545.11 50 2.4e-05 15.0 0.2 1 1 1.8e-06 6.3e-05 13.7 0.2 9 42 160 197 157 198 0.93 # 6936 # 7544 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_13 - 127 HTH_27 PF13463.1 68 0.00022 13.0 0.0 1 2 4e-05 0.0014 10.4 0.0 4 54 11 64 8 70 0.92 # 8513 # 8893 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.247 1_13 - 127 HTH_27 PF13463.1 68 0.00022 13.0 0.0 2 2 0.058 2 0.3 0.0 6 29 97 121 94 121 0.83 # 8513 # 8893 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.247 1_14 - 554 SprT-like PF10263.4 157 5.9e-05 14.1 0.0 1 1 4.8e-06 0.00016 12.7 0.0 7 71 113 174 108 177 0.79 # 8883 # 10544 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.262 1_12 - 193 HTH_Tnp_IS630 PF01710.11 120 5.3e-05 14.3 0.0 1 1 6e-06 0.0001 13.4 0.0 17 48 159 190 134 192 0.86 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_11 - 203 HTH_Tnp_IS630 PF01710.11 120 8.7e-05 13.6 0.1 1 1 1.3e-05 0.00022 12.3 0.1 9 37 166 194 162 201 0.92 # 6936 # 7544 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 2_4 - 206 Cad PF03596.8 191 2e-85 276.7 16.4 1 1 6.7e-87 2.3e-85 276.5 16.4 1 191 12 203 12 203 0.99 # 825 # 1442 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_12 - 193 HTH_40 PF14493.1 91 2.4e-05 16.0 0.0 1 1 2.9e-06 4.9e-05 15.0 0.0 8 42 155 189 153 191 0.90 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_11 - 203 HTH_40 PF14493.1 91 5.6e-05 14.8 0.1 1 1 1.1e-05 0.00018 13.1 0.1 7 31 169 193 165 195 0.92 # 6936 # 7544 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_4 - 71 HTH_3 PF01381.17 55 9.4e-13 39.3 0.0 1 1 7.4e-14 1.3e-12 38.9 0.0 13 55 4 46 2 46 0.96 # 2801 # 3013 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.305 1_2 - 51 HTH_3 PF01381.17 55 4.7e-05 14.6 0.0 1 1 4.6e-06 7.9e-05 13.9 0.0 3 26 2 25 1 27 0.91 # 1040 # 1192 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.203 5_1 - 231 DDE_3 PF13358.1 146 3.9e-07 21.3 0.2 1 1 1.5e-08 5e-07 21.0 0.2 17 95 73 150 31 203 0.81 # 61 # 753 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 5_1 - 231 DDE_Tnp_IS66 PF03050.9 271 7.2e-09 26.5 1.1 1 2 1.4e-09 4.9e-08 23.8 0.3 15 103 26 108 13 140 0.77 # 61 # 753 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 5_1 - 231 DDE_Tnp_IS66 PF03050.9 271 7.2e-09 26.5 1.1 2 2 0.0087 0.3 1.6 0.0 243 261 169 186 162 195 0.78 # 61 # 753 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 1_12 - 193 TrmB PF01978.14 68 2e-06 18.9 0.0 1 1 1.3e-07 4.4e-06 17.8 0.0 8 48 147 186 144 188 0.77 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_4 - 71 HTH_26 PF13443.1 63 1.4e-07 23.1 0.0 1 1 5.1e-09 1.7e-07 22.8 0.0 14 58 4 47 1 50 0.94 # 2801 # 3013 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.305 4_1 - 124 Thioredoxin_8 PF13905.1 95 4.4e-06 18.2 0.4 1 2 1.9e-06 6.3e-05 14.5 0.1 1 31 28 58 28 76 0.84 # 267 # 638 # 1 # ID=4_1;partial=00;start_type=TTG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.261 4_1 - 124 Thioredoxin_8 PF13905.1 95 4.4e-06 18.2 0.4 2 2 0.013 0.45 2.1 0.1 67 93 76 104 61 106 0.69 # 267 # 638 # 1 # ID=4_1;partial=00;start_type=TTG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.261 1_5 - 68 ABC_tran PF00005.22 137 0.00016 13.4 0.1 1 1 9.6e-06 0.00033 12.4 0.0 119 136 1 18 1 19 0.94 # 3232 # 3435 # -1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_14 - 554 Peptidase_M48 PF01435.13 226 7.6e-05 13.7 0.1 1 1 7.2e-06 0.00025 12.0 0.1 64 126 141 200 81 215 0.73 # 8883 # 10544 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.262 1_5 - 68 SMC_N PF02463.14 220 0.00015 12.4 0.1 1 1 4.6e-06 0.00016 12.3 0.1 161 213 11 64 2 67 0.85 # 3232 # 3435 # -1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 4_1 - 124 TraF PF13728.1 215 1.6e-05 15.8 0.0 1 1 5.4e-07 1.8e-05 15.6 0.0 130 194 38 104 17 116 0.84 # 267 # 638 # 1 # ID=4_1;partial=00;start_type=TTG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.261 1_12 - 193 Trp_repressor PF01371.14 88 1.1e-05 16.8 0.6 1 2 0.057 1.9 -0.1 0.1 3 33 87 117 85 124 0.83 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_12 - 193 Trp_repressor PF01371.14 88 1.1e-05 16.8 0.6 2 2 2e-06 6.7e-05 14.2 0.0 39 79 150 190 146 192 0.89 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 2_4 - 206 Sdh_cyt PF01127.17 121 0.00093 10.4 15.6 1 2 0.00031 0.011 7.0 1.9 35 120 13 117 2 118 0.59 # 825 # 1442 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 2_4 - 206 Sdh_cyt PF01127.17 121 0.00093 10.4 15.6 2 2 0.001 0.034 5.4 6.2 33 78 144 189 129 192 0.52 # 825 # 1442 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_17 - 209 Ribosomal_L4 PF00573.17 192 0.00032 11.5 1.4 1 2 1.8e-05 0.00062 10.6 0.2 127 182 8 66 2 69 0.80 # 14172 # 14798 # -1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_17 - 209 Ribosomal_L4 PF00573.17 192 0.00032 11.5 1.4 2 2 0.038 1.3 -0.3 0.1 62 76 132 148 96 199 0.70 # 14172 # 14798 # -1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 5_1 - 231 HTH_32 PF13565.1 77 1.5e-06 20.4 0.1 1 2 1.7e-06 2.9e-05 16.3 0.1 48 76 31 56 13 57 0.85 # 61 # 753 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 5_1 - 231 HTH_32 PF13565.1 77 1.5e-06 20.4 0.1 2 2 0.06 1 1.7 0.0 33 73 146 189 118 191 0.76 # 61 # 753 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 1_12 - 193 HTH_32 PF13565.1 77 5.8e-06 18.5 0.3 1 1 6.8e-07 1.2e-05 17.5 0.3 19 77 131 181 118 181 0.80 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/0a4a387d-79e4-48db-a0fb-c5786f4c5913 # Target file: checkm_output/bins/pGCA_001021895.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001021895.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/0a4a387d-79e4-48db-a0fb-c5786f4c5913 checkm_output/bins/pGCA_001021895.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:52:53 2021 # [ok]