# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_19 - 209 DUF258 PF03193.11 161 3.7e-10 30.4 0.1 1 1 2.3e-11 6.6e-10 29.6 0.1 13 67 4 59 1 69 0.88 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_26 - 33 GerE PF00196.14 58 9.6e-05 12.9 0.1 1 1 3.4e-06 9.9e-05 12.9 0.1 14 35 1 22 1 27 0.93 # 19365 # 19463 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_19 - 209 TIGR00157 TIGR00157 247 3.6e-05 14.2 0.1 1 1 1.9e-06 5.6e-05 13.6 0.1 104 144 8 49 2 67 0.79 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_3 - 554 Peptidase_M56 PF05569.6 299 1.1e-87 284.9 13.3 1 1 8e-89 2.3e-87 283.8 13.3 32 299 2 266 1 266 0.99 # 897 # 2558 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.262 1_19 - 209 TIGR01978 TIGR01978 243 1.3e-23 74.5 4.0 1 1 1.7e-24 4.8e-23 72.6 4.0 2 208 3 195 2 201 0.81 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 KaiC PF06745.8 227 5.2e-05 13.6 0.4 1 1 3e-06 8.7e-05 12.8 0.2 15 141 23 148 15 162 0.79 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_18 - 86 Phage_CI_repr PF07022.8 66 5.4e-08 24.1 0.0 1 1 2.3e-09 6.8e-08 23.8 0.0 14 62 17 65 5 67 0.85 # 15220 # 15477 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_19 - 209 AAA_18 PF13238.1 129 0.00039 11.9 4.6 1 1 5.7e-05 0.0017 9.9 4.6 3 64 32 120 31 203 0.64 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 AAA_13 PF13166.1 712 1.5e-07 21.3 5.0 1 2 0.00014 0.0041 6.7 1.8 11 77 23 87 13 132 0.63 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 AAA_13 PF13166.1 712 1.5e-07 21.3 5.0 2 2 2.3e-07 6.7e-06 15.9 0.6 499 578 130 198 96 205 0.82 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 TIGR03598 TIGR03598 186 2.7e-05 14.8 1.0 1 1 1.2e-06 3.5e-05 14.4 0.1 16 44 25 53 14 58 0.82 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_18 - 86 HTH_Crp_2 PF13545.1 76 4.4e-05 14.5 0.0 1 1 2.6e-06 7.6e-05 13.7 0.0 29 47 16 34 2 35 0.86 # 15220 # 15477 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_19 - 209 Zeta_toxin PF06414.7 201 3.4e-05 14.2 0.0 1 1 1.7e-06 4.8e-05 13.7 0.0 14 62 25 74 14 97 0.82 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_18 - 86 HTH_17 PF12728.2 51 3.9e-05 15.1 0.0 1 1 2.1e-06 6e-05 14.5 0.0 4 22 18 36 16 54 0.85 # 15220 # 15477 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_19 - 209 AAA_22 PF13401.1 131 1.6e-06 19.4 1.0 1 1 1.7e-07 5e-06 17.9 1.0 4 122 27 188 24 197 0.70 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_18 - 86 HTH_19 PF12844.2 64 2.1e-18 57.4 0.1 1 1 1.8e-19 2.6e-18 57.1 0.1 2 61 5 64 4 66 0.96 # 15220 # 15477 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_26 - 33 HTH_19 PF12844.2 64 0.00021 12.6 0.1 1 1 1.4e-05 0.00021 12.6 0.1 15 36 8 29 3 32 0.91 # 19365 # 19463 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_18 - 86 Sigma70_r4_2 PF08281.7 54 3e-05 14.7 0.0 1 1 2.1e-06 6e-05 13.7 0.0 22 45 11 34 9 35 0.91 # 15220 # 15477 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_26 - 33 HTH_30 PF13556.1 59 0.00011 13.0 0.0 1 1 3.9e-06 0.00011 13.0 0.0 9 30 2 23 1 29 0.89 # 19365 # 19463 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_19 - 209 AAA_23 PF13476.1 202 9e-05 14.0 9.8 1 1 2.3e-05 0.00068 11.1 9.8 10 128 17 135 11 184 0.56 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_18 - 86 HTH_31 PF13560.1 64 9.2e-14 42.7 0.0 1 1 3.8e-15 1.1e-13 42.4 0.0 2 57 3 57 2 63 0.95 # 15220 # 15477 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_26 - 33 HTH_22 PF13309.1 64 3.8e-06 17.8 0.0 1 1 1.6e-07 4.6e-06 17.6 0.0 43 61 6 24 3 25 0.94 # 19365 # 19463 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_18 - 86 HTH_37 PF13744.1 80 1.1e-08 26.0 0.3 1 1 5.1e-10 1.5e-08 25.6 0.3 18 67 2 50 1 63 0.81 # 15220 # 15477 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_8 - 225 MULE PF10551.4 93 1.2e-05 16.6 0.1 1 1 1.2e-06 3.4e-05 15.2 0.0 19 78 92 148 77 165 0.82 # 8450 # 9124 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_15 - 315 HTH_36 PF13730.1 55 5.3e-08 24.2 0.5 1 1 4.3e-09 1.2e-07 23.0 0.5 2 54 32 95 31 96 0.85 # 12077 # 13021 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.277 1_2 - 127 Penicillinase_R PF03965.11 115 1.1e-37 119.8 1.3 1 1 4.3e-39 1.2e-37 119.7 1.3 1 114 8 121 8 122 0.99 # 527 # 907 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.247 1_19 - 209 AAA_17 PF13207.1 121 7.4e-06 18.0 0.3 1 1 1.6e-06 2.4e-05 16.4 0.3 3 58 31 88 30 207 0.73 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_8 - 225 AAA_17 PF13207.1 121 7e-05 14.8 0.9 1 1 7.7e-06 0.00011 14.2 0.9 23 112 24 121 19 180 0.80 # 8450 # 9124 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_10 - 116 HTH_34 PF13601.1 80 0.0001 13.5 0.2 1 1 5.4e-06 0.00016 12.9 0.2 2 49 44 91 43 96 0.93 # 9475 # 9822 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.256 1_26 - 33 HTH_29 PF13551.1 112 1.4e-06 19.7 0.0 1 1 4.8e-08 1.4e-06 19.7 0.0 8 34 2 27 1 30 0.91 # 19365 # 19463 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_2 - 127 MarR PF01047.17 59 4.4e-09 27.2 0.1 1 1 2.7e-10 7.7e-09 26.4 0.1 1 54 8 65 8 65 0.97 # 527 # 907 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.247 1_10 - 116 HTH_20 PF12840.2 61 1.8e-05 15.7 0.0 1 1 7.7e-07 2.2e-05 15.4 0.0 15 57 48 89 34 93 0.87 # 9475 # 9822 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.256 1_10 - 116 HTH_5 PF01022.15 47 1.1e-17 54.6 1.6 1 1 6.8e-19 2e-17 53.9 1.6 1 45 41 86 41 88 0.95 # 9475 # 9822 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.256 1_26 - 33 HTH_24 PF13412.1 48 8.5e-05 13.1 0.0 1 1 3.5e-06 0.0001 12.9 0.0 20 36 8 24 2 25 0.87 # 19365 # 19463 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_19 - 209 AAA_21 PF13304.1 303 1.2e-16 52.7 5.3 1 1 3.3e-16 9.6e-15 46.4 5.3 3 301 31 193 29 195 0.94 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_8 - 225 DDE_Tnp_IS240 PF13610.1 140 1e-43 139.8 1.6 1 1 5.1e-45 1.5e-43 139.3 1.6 3 139 72 203 70 204 0.95 # 8450 # 9124 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_26 - 33 HTH_7 PF02796.10 45 6.7e-18 55.6 0.1 1 1 2.5e-19 7.1e-18 55.5 0.1 17 44 1 28 1 29 0.97 # 19365 # 19463 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_19 - 209 SbcCD_C PF13558.1 90 1.6e-05 16.0 0.0 1 1 7.3e-06 0.00021 12.4 0.0 24 88 123 174 102 176 0.79 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_2 - 127 HTH_DeoR PF08220.7 57 0.00023 11.9 0.3 1 1 3.4e-05 0.001 9.9 0.1 8 46 18 60 14 62 0.76 # 527 # 907 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.247 1_7 - 163 Peptidase_M50 PF02163.17 192 0.031 4.3 11.1 1 1 0.0036 0.1 2.6 11.1 117 142 35 119 8 124 0.66 # 6874 # 7362 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.188 1_19 - 209 AAA_10 PF12846.2 304 4.4e-05 14.1 0.2 1 1 2.6e-06 7.6e-05 13.3 0.1 3 22 29 48 27 78 0.84 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 AAA_16 PF13191.1 185 4e-05 14.8 0.7 1 1 2.7e-06 7.8e-05 13.8 0.7 24 44 27 46 14 201 0.76 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_26 - 33 HTH_23 PF13384.1 50 4.5e-09 27.0 0.0 1 1 4.6e-10 4.5e-09 27.0 0.0 13 40 1 28 1 32 0.90 # 19365 # 19463 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_18 - 86 HTH_23 PF13384.1 50 3.7e-08 24.1 0.0 1 1 6.4e-09 6.2e-08 23.4 0.0 8 38 4 36 1 42 0.85 # 15220 # 15477 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_8 - 225 HTH_23 PF13384.1 50 5.7e-05 14.0 0.3 1 1 6e-05 0.00058 10.8 0.1 29 41 42 54 41 58 0.93 # 8450 # 9124 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_18 - 86 Sigma70_ECF PF07638.6 185 0.00011 13.1 0.0 1 1 5e-06 0.00014 12.7 0.0 145 172 9 35 2 42 0.86 # 15220 # 15477 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_2 - 127 S-AdoMet_synt_M PF02772.11 120 0.00016 12.8 1.9 1 2 1.4e-05 0.00041 11.5 1.2 64 106 21 62 3 74 0.78 # 527 # 907 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.247 1_2 - 127 S-AdoMet_synt_M PF02772.11 120 0.00016 12.8 1.9 2 2 0.045 1.3 0.2 0.0 64 90 89 115 70 126 0.62 # 527 # 907 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.247 1_16 - 257 TIGR02168 TIGR02168 1181 9.5e-08 20.9 32.6 1 1 3.8e-09 1.1e-07 20.7 32.6 253 434 48 230 20 247 0.83 # 13465 # 14235 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.267 1_26 - 33 HTH_11 PF08279.7 55 1.8e-05 15.5 0.1 1 1 2.1e-06 2.1e-05 15.4 0.1 19 34 9 24 2 25 0.92 # 19365 # 19463 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_18 - 86 HTH_11 PF08279.7 55 5.5e-05 14.0 0.1 1 1 9.2e-06 8.9e-05 13.3 0.1 13 34 14 34 2 34 0.78 # 15220 # 15477 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_16 - 257 HTH_11 PF08279.7 55 0.00013 12.8 0.0 1 1 5.4e-05 0.00053 10.9 0.0 21 40 7 26 3 30 0.87 # 13465 # 14235 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.267 1_18 - 86 P22_Cro PF14549.1 60 5.8e-06 17.2 0.1 1 1 3.4e-07 9.8e-06 16.5 0.1 11 30 17 36 16 44 0.89 # 15220 # 15477 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_26 - 33 HTH_28 PF13518.1 52 2.9e-08 24.9 0.0 1 1 3.3e-09 3.2e-08 24.7 0.0 9 34 2 27 1 28 0.91 # 19365 # 19463 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_18 - 86 HTH_28 PF13518.1 52 2.3e-06 18.8 0.1 1 1 4.8e-07 4.6e-06 17.8 0.1 11 32 14 35 3 38 0.83 # 15220 # 15477 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_8 - 225 HTH_28 PF13518.1 52 0.00013 13.2 2.9 1 1 1.7e-05 0.00016 12.9 0.7 14 36 30 54 17 55 0.85 # 8450 # 9124 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_16 - 257 HlyD PF00529.15 305 0.0029 8.0 14.0 1 1 0.00014 0.0041 7.5 14.0 43 137 106 202 94 228 0.78 # 13465 # 14235 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.267 1_19 - 209 Dynamin_N PF00350.18 168 7.6e-05 13.7 2.6 1 1 7.1e-06 0.00021 12.3 2.6 2 35 31 64 31 196 0.64 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 MMR_HSR1 PF01926.18 116 4.1e-06 17.9 2.8 1 1 3e-07 8.6e-06 16.9 2.8 3 91 31 134 29 203 0.64 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_26 - 33 CENP-B_N PF04218.8 53 4.2e-07 20.5 0.1 1 1 1.6e-08 4.7e-07 20.4 0.1 19 46 2 29 1 30 0.91 # 19365 # 19463 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_19 - 209 NTPase_1 PF03266.10 168 9.3e-05 13.3 0.3 1 2 0.0012 0.035 5.0 0.0 3 19 31 47 29 57 0.86 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 NTPase_1 PF03266.10 168 9.3e-05 13.3 0.3 2 2 0.00037 0.011 6.6 0.2 80 135 134 191 104 207 0.74 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_11 - 206 Virul_fac_BrkB PF03631.10 260 0.0013 9.2 23.5 1 2 7.7e-06 0.00022 11.7 7.6 166 235 11 79 1 81 0.84 # 9841 # 10458 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_11 - 206 Virul_fac_BrkB PF03631.10 260 0.0013 9.2 23.5 2 2 0.0021 0.062 3.7 8.0 115 180 135 191 107 193 0.63 # 9841 # 10458 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_19 - 209 AAA_15 PF13175.1 415 3.4e-09 27.3 10.0 1 2 2.8e-06 8.2e-05 12.9 6.6 7 91 11 87 4 110 0.62 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 AAA_15 PF13175.1 415 3.4e-09 27.3 10.0 2 2 5.3e-07 1.5e-05 15.2 3.5 285 411 82 190 61 194 0.67 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 FeoB_N PF02421.13 156 1.6e-05 15.4 3.7 1 2 4.3e-05 0.0012 9.2 0.0 3 24 30 51 28 57 0.89 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 FeoB_N PF02421.13 156 1.6e-05 15.4 3.7 2 2 0.00037 0.011 6.2 1.3 85 131 161 207 129 208 0.78 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_26 - 33 TetR_N PF00440.18 47 7.4e-05 13.6 0.0 1 1 2.8e-06 8.2e-05 13.4 0.0 19 35 8 24 3 25 0.92 # 19365 # 19463 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_8 - 225 rve PF00665.21 120 7.9e-17 52.7 0.9 1 1 5.8e-18 1.7e-16 51.6 0.3 4 117 68 174 65 176 0.87 # 8450 # 9124 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_18 - 86 HTH_25 PF13413.1 62 3.5e-06 17.8 0.1 1 1 1.8e-07 5.1e-06 17.3 0.1 3 28 8 33 6 41 0.87 # 15220 # 15477 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_8 - 225 HTH_Tnp_1 PF01527.15 76 0.00027 12.1 0.3 1 1 1.8e-05 0.00053 11.1 0.3 24 47 29 54 5 73 0.79 # 8450 # 9124 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_18 - 86 Phage_terminase PF10668.4 60 7.5e-05 13.7 0.3 1 1 3.7e-06 0.00011 13.2 0.3 25 47 18 40 8 47 0.88 # 15220 # 15477 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_26 - 33 HTH_38 PF13936.1 44 7e-07 20.0 0.1 1 1 6.3e-08 9.1e-07 19.6 0.1 16 39 1 24 1 25 0.97 # 19365 # 19463 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_18 - 86 HTH_38 PF13936.1 44 2.8e-05 14.8 0.0 1 1 2.9e-06 4.2e-05 14.3 0.0 12 39 6 34 3 35 0.88 # 15220 # 15477 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_18 - 86 Sigma70_r4 PF04545.11 50 6.5e-06 16.6 0.0 1 1 6.5e-07 9.4e-06 16.1 0.0 15 41 10 36 5 38 0.87 # 15220 # 15477 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_26 - 33 Sigma70_r4 PF04545.11 50 8.1e-05 13.1 0.1 1 1 6.5e-06 9.5e-05 12.9 0.1 19 42 4 27 2 28 0.87 # 19365 # 19463 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_2 - 127 HTH_27 PF13463.1 68 0.00018 13.0 0.0 1 2 4e-05 0.0012 10.4 0.0 4 54 11 64 8 70 0.92 # 527 # 907 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.247 1_2 - 127 HTH_27 PF13463.1 68 0.00018 13.0 0.0 2 2 0.058 1.7 0.3 0.0 6 29 97 121 94 121 0.83 # 527 # 907 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.247 1_3 - 554 SprT-like PF10263.4 157 5e-05 14.1 0.0 1 1 4.8e-06 0.00014 12.7 0.0 7 71 113 174 108 177 0.79 # 897 # 2558 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.262 1_11 - 206 Cad PF03596.8 191 1.7e-85 276.7 16.4 1 1 6.7e-87 1.9e-85 276.5 16.4 1 191 12 203 12 203 0.99 # 9841 # 10458 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_26 - 33 HTH_40 PF14493.1 91 2.9e-05 15.5 0.2 1 1 1.2e-06 3.3e-05 15.3 0.2 9 31 1 23 1 25 0.96 # 19365 # 19463 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_18 - 86 HTH_3 PF01381.17 55 5.9e-20 62.1 0.0 1 1 5.4e-21 7.9e-20 61.7 0.0 1 55 7 61 7 61 0.98 # 15220 # 15477 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_26 - 33 HTH_3 PF01381.17 55 7e-05 13.9 0.0 1 1 5.2e-06 7.6e-05 13.8 0.0 13 29 9 25 2 31 0.85 # 19365 # 19463 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_8 - 225 DDE_3 PF13358.1 146 5.1e-07 20.7 0.2 1 1 2.2e-08 6.4e-07 20.4 0.2 17 95 67 144 26 197 0.81 # 8450 # 9124 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_8 - 225 DDE_Tnp_IS66 PF03050.9 271 9.5e-09 25.9 2.2 1 2 1.3e-09 3.7e-08 24.0 0.4 15 104 20 103 7 135 0.75 # 8450 # 9124 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_8 - 225 DDE_Tnp_IS66 PF03050.9 271 9.5e-09 25.9 2.2 2 2 0.0083 0.24 1.6 0.1 243 261 163 180 156 189 0.77 # 8450 # 9124 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_26 - 33 TrmB PF01978.14 68 4.9e-05 14.2 0.1 1 1 1.8e-06 5.1e-05 14.2 0.1 21 42 4 25 1 27 0.87 # 19365 # 19463 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_18 - 86 HTH_26 PF13443.1 63 3.6e-09 28.0 0.0 1 1 3e-10 4.3e-09 27.7 0.0 8 58 13 62 2 65 0.89 # 15220 # 15477 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_26 - 33 HTH_26 PF13443.1 63 5.9e-05 14.5 0.1 1 1 4.1e-06 5.9e-05 14.5 0.1 6 34 1 29 1 32 0.87 # 19365 # 19463 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_19 - 209 ABC_tran PF00005.22 137 1.1e-36 117.3 0.1 1 1 5.4e-38 1.6e-36 116.8 0.1 1 136 17 159 17 160 0.93 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_3 - 554 Peptidase_M48 PF01435.13 226 6.4e-05 13.7 0.1 1 1 7.2e-06 0.00021 12.0 0.1 64 126 141 200 81 215 0.73 # 897 # 2558 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.262 1_26 - 33 HTH_8 PF02954.14 42 4.6e-05 14.1 0.0 1 1 1.7e-06 4.8e-05 14.1 0.0 18 37 5 24 1 26 0.88 # 19365 # 19463 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_19 - 209 SMC_N PF02463.14 220 4.4e-08 23.7 6.0 1 1 3.4e-09 9.9e-08 22.6 6.0 9 213 12 205 3 208 0.76 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 AAA_29 PF13555.1 62 1.6e-07 22.0 0.0 1 1 1e-08 2.9e-07 21.2 0.0 16 40 21 44 13 48 0.83 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_15 - 315 RepA_N PF06970.6 76 1.7e-35 111.9 4.9 1 1 1.8e-36 5.2e-35 110.4 4.9 1 76 15 90 15 90 0.99 # 12077 # 13021 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.277 1_11 - 206 Sdh_cyt PF01127.17 121 0.00079 10.4 15.6 1 2 0.00031 0.0091 7.0 1.9 35 120 13 117 2 118 0.59 # 9841 # 10458 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_11 - 206 Sdh_cyt PF01127.17 121 0.00079 10.4 15.6 2 2 0.001 0.029 5.4 6.2 33 78 144 189 129 192 0.52 # 9841 # 10458 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_17 - 32 zf-C4_Topoisom PF01396.14 39 4.1e-06 17.5 0.5 1 1 1.9e-07 5.5e-06 17.1 0.5 3 18 7 22 6 23 0.91 # 14339 # 14434 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.260 1_6 - 209 Ribosomal_L4 PF00573.17 192 0.00027 11.5 1.4 1 2 1.8e-05 0.00052 10.6 0.2 127 182 8 66 2 69 0.80 # 6186 # 6812 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_6 - 209 Ribosomal_L4 PF00573.17 192 0.00027 11.5 1.4 2 2 0.038 1.1 -0.3 0.1 62 76 132 148 96 199 0.70 # 6186 # 6812 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_8 - 225 HTH_32 PF13565.1 77 3.6e-06 18.9 0.1 1 1 8.7e-07 2.5e-05 16.2 0.1 48 76 25 50 9 51 0.86 # 8450 # 9124 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/cd153b8a-b176-4394-b667-48f576f0cddc # Target file: checkm_output/bins/pGCA_001021875.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001021875.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/cd153b8a-b176-4394-b667-48f576f0cddc checkm_output/bins/pGCA_001021875.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:52:54 2021 # [ok]