# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_15 - 186 DUF258 PF03193.11 161 5.1e-08 23.5 0.0 1 1 2.7e-09 8.3e-08 22.8 0.0 35 67 4 36 1 50 0.87 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_21 - 248 GerE PF00196.14 58 3.4e-06 17.6 1.1 1 2 0.00033 0.0051 7.5 0.1 19 42 2 25 2 27 0.90 # 15497 # 16240 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.293 1_21 - 248 GerE PF00196.14 58 3.4e-06 17.6 1.1 2 2 0.00014 0.0022 8.7 0.1 21 45 97 121 93 133 0.87 # 15497 # 16240 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.293 1_8 - 112 GerE PF00196.14 58 5.9e-05 13.7 0.1 1 1 8.1e-06 0.00013 12.6 0.1 11 35 80 104 78 109 0.93 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_15 - 186 TIGR01978 TIGR01978 243 1e-18 58.5 3.0 1 1 2.4e-19 7.6e-18 55.7 3.0 24 208 2 172 1 178 0.78 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_20 - 114 Phage_CI_repr PF07022.8 66 8e-09 26.8 0.0 1 1 3.4e-10 1e-08 26.5 0.0 14 62 17 65 7 69 0.88 # 14296 # 14637 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_15 - 186 AAA_18 PF13238.1 129 0.00032 12.3 4.2 1 1 4.9e-05 0.0015 10.1 4.2 3 64 9 97 8 181 0.64 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 AAA_13 PF13166.1 712 7.3e-08 22.5 2.6 1 2 0.00013 0.0042 6.7 0.6 23 81 11 68 3 98 0.65 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 AAA_13 PF13166.1 712 7.3e-08 22.5 2.6 2 2 2.5e-07 7.6e-06 15.8 0.3 500 578 108 175 76 181 0.82 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_28 - 192 MarR_2 PF12802.2 62 6.3e-07 20.3 0.0 1 2 0.012 0.18 2.8 0.1 23 45 112 134 103 137 0.86 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_28 - 192 MarR_2 PF12802.2 62 6.3e-07 20.3 0.0 2 2 1.9e-06 3e-05 15.0 0.0 7 47 149 186 144 188 0.90 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_9 - 105 MarR_2 PF12802.2 62 6.5e-06 17.1 0.0 1 1 5.7e-07 8.8e-06 16.7 0.0 10 57 21 65 13 68 0.82 # 5883 # 6197 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.292 1_15 - 186 TIGR03598 TIGR03598 186 4.7e-05 14.1 1.0 1 1 1.9e-06 6e-05 13.7 0.1 17 44 3 30 1 35 0.83 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_20 - 114 HTH_Crp_2 PF13545.1 76 7.1e-05 13.9 0.0 1 1 1.5e-05 0.00015 12.8 0.0 30 47 17 34 2 35 0.87 # 14296 # 14637 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_28 - 192 HTH_Crp_2 PF13545.1 76 9.8e-05 13.4 0.0 1 1 2.8e-05 0.00029 11.9 0.0 24 55 156 187 147 188 0.90 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_3 - 122 HTH_Crp_2 PF13545.1 76 0.00024 12.2 0.0 1 2 0.056 0.58 1.3 0.0 33 56 4 27 2 47 0.81 # 3171 # 3536 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_3 - 122 HTH_Crp_2 PF13545.1 76 0.00024 12.2 0.0 2 2 0.00022 0.0022 9.1 0.0 31 62 58 89 30 94 0.84 # 3171 # 3536 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_15 - 186 Zeta_toxin PF06414.7 201 6.4e-05 13.3 0.0 1 1 3.1e-06 9.5e-05 12.8 0.0 17 61 5 50 2 71 0.82 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_20 - 114 HTH_17 PF12728.2 51 5.3e-05 14.8 0.0 1 1 3.7e-06 0.00011 13.7 0.0 4 21 18 35 16 53 0.86 # 14296 # 14637 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_15 - 186 AAA_22 PF13401.1 131 4.9e-07 21.2 1.2 1 1 4.7e-08 1.4e-06 19.7 1.2 3 130 3 173 1 174 0.76 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_20 - 114 HTH_19 PF12844.2 64 1.2e-17 55.1 0.1 1 1 1.2e-18 1.8e-17 54.5 0.1 2 61 5 64 4 66 0.96 # 14296 # 14637 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_8 - 112 HTH_19 PF12844.2 64 2.4e-05 15.7 0.3 1 1 3.4e-06 5.3e-05 14.6 0.3 10 34 85 109 82 111 0.90 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_8 - 112 Sigma70_r4_2 PF08281.7 54 0.00016 12.4 0.7 1 2 0.071 2.2 -0.8 0.1 3 16 24 37 22 38 0.82 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_8 - 112 Sigma70_r4_2 PF08281.7 54 0.00016 12.4 0.7 2 2 1.5e-05 0.00046 11.0 0.1 18 44 80 105 77 106 0.89 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_28 - 192 Mga PF05043.8 87 3.4e-07 21.8 0.4 1 2 0.007 0.22 3.2 0.1 24 52 104 132 74 137 0.83 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_28 - 192 Mga PF05043.8 87 3.4e-07 21.8 0.4 2 2 4.8e-07 1.5e-05 16.6 0.0 16 55 147 185 143 187 0.93 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_28 - 192 HTH_30 PF13556.1 59 7.2e-05 13.7 0.0 1 1 4.8e-06 0.00015 12.7 0.0 3 38 151 186 150 187 0.94 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_4 - 126 DUF972 PF06156.8 107 0.035 5.8 9.6 1 3 0.054 1.7 0.4 0.3 29 35 17 23 1 59 0.53 # 3774 # 4151 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.304 1_4 - 126 DUF972 PF06156.8 107 0.035 5.8 9.6 2 3 0.019 0.58 1.9 0.3 37 73 58 87 25 94 0.55 # 3774 # 4151 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.304 1_4 - 126 DUF972 PF06156.8 107 0.035 5.8 9.6 3 3 0.00014 0.0045 8.6 1.4 24 52 93 121 86 125 0.86 # 3774 # 4151 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.304 1_29 - 710 DUF1128 PF06569.6 71 0.00023 12.2 0.5 1 1 3.7e-05 0.0011 9.9 0.4 18 39 480 501 477 506 0.90 # 22836 # 24965 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.343 1_15 - 186 AAA_23 PF13476.1 202 0.00065 11.3 7.2 1 1 0.00014 0.0044 8.6 7.2 23 131 8 115 3 177 0.54 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_20 - 114 HTH_31 PF13560.1 64 5e-13 40.4 0.0 1 1 2e-14 6.2e-13 40.1 0.0 2 59 3 59 2 66 0.95 # 14296 # 14637 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_28 - 192 HTH_22 PF13309.1 64 2.2e-08 25.1 0.3 1 2 0.038 0.39 1.9 0.0 23 38 70 85 64 86 0.87 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_28 - 192 HTH_22 PF13309.1 64 2.2e-08 25.1 0.3 2 2 1.3e-07 1.4e-06 19.4 0.1 12 64 136 182 128 182 0.82 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_8 - 112 HTH_22 PF13309.1 64 1.5e-07 22.5 0.7 1 2 0.001 0.01 6.9 0.3 2 41 20 59 19 61 0.93 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_8 - 112 HTH_22 PF13309.1 64 1.5e-07 22.5 0.7 2 2 6.2e-06 6.4e-05 14.0 0.0 43 61 88 106 82 107 0.92 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_21 - 248 HTH_22 PF13309.1 64 4.1e-05 14.6 1.1 1 1 1.6e-05 0.00016 12.7 0.0 43 64 2 23 1 23 0.92 # 15497 # 16240 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.293 1_20 - 114 HTH_37 PF13744.1 80 5.1e-08 24.0 0.6 1 1 2.3e-09 7.2e-08 23.5 0.6 18 56 2 40 1 63 0.82 # 14296 # 14637 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_5 - 225 MULE PF10551.4 93 1.3e-05 16.7 0.1 1 1 1.1e-06 3.5e-05 15.3 0.0 19 78 92 148 76 165 0.82 # 4246 # 4920 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_28 - 192 HTH_36 PF13730.1 55 1.4e-05 16.5 0.1 1 1 2.9e-06 3e-05 15.4 0.1 28 51 163 186 145 188 0.92 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_22 - 325 HTH_36 PF13730.1 55 5.6e-05 14.5 0.6 1 1 1.3e-05 0.00013 13.3 0.6 2 55 31 95 30 95 0.76 # 16666 # 17640 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.279 1_8 - 112 HTH_36 PF13730.1 55 0.00013 13.4 0.0 1 1 2.4e-05 0.00025 12.5 0.0 27 47 89 109 75 110 0.94 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_2 - 727 Hydrolase PF00702.21 215 2.5e-47 153.3 1.5 1 1 3e-48 4.7e-47 152.4 1.5 1 213 408 629 408 631 0.91 # 998 # 3178 # -1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.404 1_29 - 710 Hydrolase PF00702.21 215 7.8e-42 135.3 0.0 1 1 8.2e-43 1.3e-41 134.6 0.0 1 215 396 612 396 612 0.87 # 22836 # 24965 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.343 1_15 - 186 AAA_17 PF13207.1 121 8.2e-06 17.9 0.3 1 1 1.6e-06 2.4e-05 16.4 0.3 3 51 8 58 7 184 0.74 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_5 - 225 AAA_17 PF13207.1 121 7.1e-05 14.9 0.7 1 1 7.4e-06 0.00012 14.2 0.7 23 112 24 121 19 171 0.81 # 4246 # 4920 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_26 - 274 HTH_1 PF00126.22 60 1.8e-20 63.8 0.0 1 1 1.6e-21 4.9e-20 62.4 0.0 2 60 2 60 1 60 0.94 # 19803 # 20624 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.293 1_29 - 710 SelP_N PF04592.9 238 0.037 4.6 14.3 1 1 0.0021 0.066 3.8 14.3 180 211 32 63 20 68 0.82 # 22836 # 24965 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.343 1_31 - 328 DDE_Tnp_1_6 PF13751.1 125 6.1e-32 101.6 1.7 1 2 0.021 0.66 1.3 2.0 59 100 5 46 1 56 0.75 # 26480 # 27463 # -1 # ID=1_31;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.296 1_31 - 328 DDE_Tnp_1_6 PF13751.1 125 6.1e-32 101.6 1.7 2 2 2e-33 6.1e-32 101.6 1.7 1 125 171 298 171 298 0.95 # 26480 # 27463 # -1 # ID=1_31;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.296 1_10 - 430 ArsB PF02040.10 423 2e-234 769.3 48.8 1 1 7.5e-236 2.3e-234 769.1 48.8 1 423 4 426 4 426 1.00 # 6197 # 7486 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_9 - 105 HTH_34 PF13601.1 80 2.5e-05 15.6 0.0 1 1 1.2e-06 3.7e-05 15.0 0.0 2 52 18 67 17 76 0.91 # 5883 # 6197 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.292 1_8 - 112 HTH_29 PF13551.1 112 1.7e-07 22.7 0.1 1 1 5e-08 7.8e-07 20.6 0.0 3 34 79 109 78 110 0.92 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_28 - 192 HTH_29 PF13551.1 112 1.1e-06 20.0 0.6 1 2 0.021 0.32 2.5 0.2 32 68 121 155 118 158 0.73 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_28 - 192 HTH_29 PF13551.1 112 1.1e-06 20.0 0.6 2 2 1.6e-06 2.5e-05 15.7 0.0 7 40 156 188 153 191 0.90 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_28 - 192 MarR PF01047.17 59 5.2e-06 17.4 0.1 1 1 8.7e-07 1.4e-05 16.1 0.0 1 43 145 186 145 187 0.91 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_9 - 105 MarR PF01047.17 59 2.2e-05 15.4 0.0 1 1 3e-06 4.6e-05 14.4 0.0 16 52 28 64 8 67 0.85 # 5883 # 6197 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.292 1_9 - 105 HTH_20 PF12840.2 61 8.8e-14 42.4 0.0 1 1 1.1e-14 1.2e-13 42.0 0.0 2 60 8 65 7 66 0.97 # 5883 # 6197 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.292 1_3 - 122 HTH_20 PF12840.2 61 1.1e-10 32.5 0.1 1 1 1.8e-11 1.8e-10 31.8 0.0 2 61 33 92 32 92 0.97 # 3171 # 3536 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_28 - 192 HTH_20 PF12840.2 61 5.1e-05 14.4 0.0 1 1 2.7e-05 0.00028 12.0 0.0 13 50 150 186 145 188 0.92 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_28 - 192 RuvB_C PF05491.8 76 0.00022 12.2 0.4 1 2 0.038 1.2 0.2 0.1 55 67 121 133 117 139 0.82 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_28 - 192 RuvB_C PF05491.8 76 0.00022 12.2 0.4 2 2 8e-05 0.0025 8.8 0.0 6 43 145 178 142 182 0.86 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_9 - 105 HTH_5 PF01022.15 47 1e-21 67.7 0.4 1 1 9.9e-23 1e-21 67.7 0.4 1 47 15 61 15 61 0.97 # 5883 # 6197 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.292 1_3 - 122 HTH_5 PF01022.15 47 1.8e-19 60.5 0.1 1 1 3.9e-20 4e-19 59.4 0.1 1 47 40 87 40 87 0.97 # 3171 # 3536 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_28 - 192 HTH_5 PF01022.15 47 0.00015 12.7 0.0 1 1 3.2e-05 0.00033 11.6 0.0 5 41 150 186 147 187 0.86 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_28 - 192 Terminase_5 PF06056.7 58 9.4e-05 13.3 0.1 1 1 5.8e-06 0.00018 12.3 0.1 7 36 154 183 153 190 0.90 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_28 - 192 HTH_24 PF13412.1 48 3.3e-11 33.8 0.2 1 1 2e-12 6.1e-11 32.9 0.2 1 44 145 187 145 188 0.97 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_15 - 186 AAA_21 PF13304.1 303 1.3e-16 52.6 5.2 1 2 4.4e-09 1.4e-07 23.0 1.9 3 95 8 98 6 104 0.87 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 AAA_21 PF13304.1 303 1.3e-16 52.6 5.2 2 2 9.6e-13 3e-11 35.0 2.4 164 301 52 170 34 172 0.67 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_28 - 192 HTH_AsnC-type PF13404.1 42 8.1e-05 13.5 0.0 1 1 5.6e-06 0.00017 12.4 0.0 3 42 147 185 145 185 0.91 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_5 - 225 DDE_Tnp_IS240 PF13610.1 140 7.8e-44 140.3 1.5 1 1 3.6e-45 1.1e-43 139.8 1.5 3 139 72 203 70 204 0.95 # 4246 # 4920 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_28 - 192 HTH_IclR PF09339.5 52 6.2e-06 17.1 0.0 1 1 5.7e-07 1.8e-05 15.6 0.0 7 45 151 187 150 188 0.86 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_21 - 248 HTH_10 PF04967.7 53 0.00014 12.7 0.0 1 1 1e-05 0.00031 11.6 0.0 25 46 3 24 2 30 0.87 # 15497 # 16240 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.293 1_28 - 192 HTH_7 PF02796.10 45 3.1e-20 63.1 0.1 1 1 4.4e-21 6.9e-20 62.0 0.1 1 44 140 183 140 184 0.98 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_8 - 112 HTH_7 PF02796.10 45 3.6e-19 59.7 0.6 1 1 2.3e-20 3.6e-19 59.7 0.6 1 44 59 110 59 111 0.95 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_15 - 186 SbcCD_C PF13558.1 90 5.1e-06 17.7 0.0 1 1 2.4e-06 7.5e-05 13.9 0.0 11 88 87 151 80 153 0.81 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_28 - 192 HTH_DeoR PF08220.7 57 8.9e-05 13.3 0.0 1 1 1.2e-05 0.00019 12.3 0.0 16 40 162 186 149 189 0.82 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_21 - 248 HTH_DeoR PF08220.7 57 0.00022 12.1 2.0 1 1 2.2e-05 0.00035 11.4 0.0 16 33 3 20 2 30 0.84 # 15497 # 16240 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.293 1_4 - 126 LacI PF00356.16 46 1.5e-05 15.9 0.4 1 2 0.00013 0.0041 8.1 0.1 27 40 19 32 10 34 0.87 # 3774 # 4151 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.304 1_4 - 126 LacI PF00356.16 46 1.5e-05 15.9 0.4 2 2 0.0011 0.034 5.1 0.0 5 14 45 54 42 54 0.90 # 3774 # 4151 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.304 1_19 - 287 Rep_3 PF01051.16 222 9.2e-50 160.5 17.7 1 1 3.7e-51 1.1e-49 160.2 17.7 3 222 4 220 2 220 0.95 # 13349 # 14209 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.266 1_28 - 192 Phage_antitermQ PF06530.7 126 0.00025 11.9 0.0 1 2 0.026 0.81 0.5 0.0 52 94 58 100 37 112 0.82 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_28 - 192 Phage_antitermQ PF06530.7 126 0.00025 11.9 0.0 2 2 6.7e-05 0.0021 8.9 0.0 62 102 144 184 141 187 0.91 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_26 - 274 TIGR00651 TIGR00651 304 9.3e-05 12.9 0.1 1 1 5e-06 0.00015 12.1 0.1 98 193 140 233 128 247 0.88 # 19803 # 20624 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.293 1_15 - 186 AAA_10 PF12846.2 304 4.1e-05 14.3 0.2 1 1 2.3e-06 7.1e-05 13.5 0.1 3 22 6 25 4 50 0.84 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 AAA_16 PF13191.1 185 7.3e-05 14.0 0.7 1 1 3.8e-06 0.00012 13.4 0.7 24 42 4 22 2 179 0.88 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_8 - 112 HTH_23 PF13384.1 50 2.8e-11 34.1 0.7 1 1 8.3e-12 5.1e-11 33.3 0.1 5 39 75 109 71 110 0.90 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_28 - 192 HTH_23 PF13384.1 50 3.2e-08 24.4 0.0 1 1 1.3e-08 8e-08 23.1 0.0 13 41 156 184 150 189 0.86 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_20 - 114 HTH_23 PF13384.1 50 4e-07 20.9 0.1 1 1 1.1e-07 6.6e-07 20.2 0.1 8 38 4 36 1 42 0.84 # 14296 # 14637 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_21 - 248 HTH_23 PF13384.1 50 6.3e-06 17.1 0.0 1 1 3.1e-06 1.9e-05 15.5 0.0 18 42 2 26 2 32 0.89 # 15497 # 16240 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.293 1_5 - 225 HTH_23 PF13384.1 50 6.1e-05 14.0 0.3 1 1 0.0001 0.00062 10.8 0.1 29 41 42 54 41 58 0.93 # 4246 # 4920 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_9 - 105 TFIIE_alpha PF02002.12 105 5.1e-06 17.3 0.0 1 1 1.9e-07 6e-06 17.1 0.0 4 82 7 82 4 97 0.84 # 5883 # 6197 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.292 1_2 - 727 Hydrolase_3 PF08282.7 254 2.7e-06 18.3 4.0 1 2 0.085 1.3 -0.3 0.1 14 36 547 569 535 589 0.81 # 998 # 3178 # -1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.404 1_2 - 727 Hydrolase_3 PF08282.7 254 2.7e-06 18.3 4.0 2 2 2.5e-07 3.8e-06 17.8 1.1 194 239 603 649 601 653 0.85 # 998 # 3178 # -1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.404 1_29 - 710 Hydrolase_3 PF08282.7 254 1.1e-05 16.4 0.3 1 2 0.0083 0.13 3.0 0.0 10 55 525 570 523 576 0.91 # 22836 # 24965 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.343 1_29 - 710 Hydrolase_3 PF08282.7 254 1.1e-05 16.4 0.3 2 2 6.9e-07 1.1e-05 16.4 0.3 193 247 583 637 581 644 0.87 # 22836 # 24965 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.343 1_28 - 192 UPF0122 PF04297.9 101 5.7e-05 14.4 0.1 1 1 5.4e-06 0.00017 12.9 0.0 19 58 146 185 142 188 0.87 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_4 - 126 HTH_6 PF01418.12 77 0.00085 10.4 5.3 1 2 1.4e-05 0.00043 11.3 0.5 2 51 7 56 6 58 0.91 # 3774 # 4151 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.304 1_4 - 126 HTH_6 PF01418.12 77 0.00085 10.4 5.3 2 2 0.027 0.83 0.8 0.4 4 29 75 100 72 115 0.71 # 3774 # 4151 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.304 1_21 - 248 TIGR02168 TIGR02168 1181 0.0031 6.1 33.9 1 1 0.00012 0.0038 5.8 33.9 239 452 28 235 2 240 0.66 # 15497 # 16240 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.293 1_28 - 192 HTH_11 PF08279.7 55 4.6e-09 27.2 0.1 1 1 1.4e-09 1.1e-08 25.9 0.1 4 41 151 186 147 188 0.81 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_21 - 248 HTH_11 PF08279.7 55 1.5e-07 22.3 0.6 1 1 7.3e-08 5.7e-07 20.5 0.1 17 40 3 26 2 31 0.93 # 15497 # 16240 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.293 1_8 - 112 HTH_11 PF08279.7 55 7.1e-06 17.0 1.2 1 1 1.4e-06 1.1e-05 16.4 0.1 5 34 80 106 78 107 0.82 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_20 - 114 HTH_11 PF08279.7 55 0.0001 13.3 0.2 1 1 2.1e-05 0.00016 12.6 0.2 15 34 15 34 2 34 0.78 # 14296 # 14637 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_20 - 114 P22_Cro PF14549.1 60 1e-05 16.5 0.1 1 1 5.6e-07 1.7e-05 15.8 0.1 11 30 17 36 16 44 0.89 # 14296 # 14637 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_8 - 112 HTH_28 PF13518.1 52 6.6e-10 30.2 0.6 1 1 2e-10 1.2e-09 29.3 0.1 3 33 78 108 78 110 0.95 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_28 - 192 HTH_28 PF13518.1 52 2.3e-05 15.7 0.0 1 1 9.5e-06 5.9e-05 14.4 0.0 8 37 156 185 152 188 0.93 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_20 - 114 HTH_28 PF13518.1 52 3.9e-05 14.9 0.2 1 1 1.4e-05 8.5e-05 13.9 0.2 11 32 14 35 2 38 0.81 # 14296 # 14637 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_5 - 225 HTH_28 PF13518.1 52 0.00014 13.2 2.9 1 1 2.8e-05 0.00017 12.9 0.7 14 36 30 54 17 55 0.85 # 4246 # 4920 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_21 - 248 HTH_28 PF13518.1 52 0.00022 12.5 0.0 1 1 8.2e-05 0.00051 11.4 0.0 14 37 3 26 1 30 0.91 # 15497 # 16240 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.293 1_29 - 710 HAD PF12710.2 192 2.2e-18 58.3 0.0 1 1 2.2e-19 3.4e-18 57.7 0.0 3 191 401 608 399 609 0.84 # 22836 # 24965 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.343 1_2 - 727 HAD PF12710.2 192 8.8e-17 53.1 0.0 1 1 1.2e-17 1.9e-16 52.0 0.0 1 191 411 627 411 628 0.61 # 998 # 3178 # -1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.404 1_8 - 112 HTH_Tnp_1_2 PF13022.1 142 5.1e-05 14.4 0.1 1 2 0.024 0.75 0.9 0.0 26 54 36 66 17 81 0.58 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_8 - 112 HTH_Tnp_1_2 PF13022.1 142 5.1e-05 14.4 0.1 2 2 8.1e-06 0.00025 12.1 0.0 26 56 82 109 67 111 0.79 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_15 - 186 Dynamin_N PF00350.18 168 5.9e-05 14.2 2.2 1 1 5.5e-06 0.00017 12.7 2.2 2 28 8 34 8 173 0.76 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_28 - 192 HTH_Tnp_4 PF13613.1 53 3.1e-05 14.8 0.0 1 1 2.1e-06 6.4e-05 13.8 0.0 24 45 165 186 159 187 0.90 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_15 - 186 MMR_HSR1 PF01926.18 116 8.9e-06 17.0 2.4 1 1 9.6e-07 3e-05 15.3 2.4 3 30 8 33 6 182 0.52 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_10 - 430 CitMHS PF03600.11 351 3.2e-24 76.3 39.4 1 1 2.2e-25 6.7e-24 75.2 39.4 3 350 8 369 2 370 0.80 # 6197 # 7486 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_8 - 112 CENP-B_N PF04218.8 53 5.3e-10 29.9 3.8 1 2 2.8e-05 0.00085 10.1 0.4 13 35 29 51 27 54 0.87 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_8 - 112 CENP-B_N PF04218.8 53 5.3e-10 29.9 3.8 2 2 9.5e-09 3e-07 21.1 0.2 14 46 79 111 78 111 0.95 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_15 - 186 NTPase_1 PF03266.10 168 5.8e-05 14.1 0.5 1 2 0.001 0.031 5.2 0.0 3 19 8 24 6 35 0.85 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 NTPase_1 PF03266.10 168 5.8e-05 14.1 0.5 2 2 0.00022 0.0069 7.3 0.2 73 136 104 169 81 184 0.74 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_28 - 192 GntR PF00392.16 64 0.00014 12.6 0.0 1 1 8.4e-06 0.00026 11.7 0.0 23 52 162 188 150 189 0.83 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_8 - 112 HTH_Tnp_ISL3 PF13542.1 52 3.1e-05 14.4 0.0 1 1 1.5e-06 4.7e-05 13.9 0.0 18 47 78 107 73 109 0.86 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_21 - 248 Glu_synthase PF01645.12 368 0.0011 9.0 5.5 1 2 0.07 2.2 -1.8 0.1 17 52 50 84 22 100 0.53 # 15497 # 16240 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.293 1_21 - 248 Glu_synthase PF01645.12 368 0.0011 9.0 5.5 2 2 1.6e-05 0.00049 10.3 2.9 11 71 100 159 87 162 0.82 # 15497 # 16240 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.293 1_15 - 186 AAA_15 PF13175.1 415 2e-08 24.8 5.3 1 2 1.5e-05 0.00047 10.5 3.7 27 100 9 69 5 103 0.58 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 AAA_15 PF13175.1 415 2e-08 24.8 5.3 2 2 8.9e-07 2.7e-05 14.5 2.3 291 414 64 170 39 171 0.67 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 FeoB_N PF02421.13 156 4.6e-05 14.0 3.7 1 3 3.7e-05 0.0011 9.5 0.0 3 24 7 28 5 34 0.89 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 FeoB_N PF02421.13 156 4.6e-05 14.0 3.7 2 3 0.094 2.9 -1.6 0.0 115 131 90 106 61 117 0.53 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 FeoB_N PF02421.13 156 4.6e-05 14.0 3.7 3 3 0.0011 0.036 4.6 0.9 85 131 138 184 106 185 0.76 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_8 - 112 TetR_N PF00440.18 47 4.1e-05 14.5 0.2 1 1 5.3e-06 8.2e-05 13.5 0.1 18 35 89 106 85 107 0.92 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_28 - 192 TetR_N PF00440.18 47 0.00015 12.7 0.1 1 1 4.1e-05 0.00063 10.7 0.0 16 36 160 180 158 180 0.92 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_5 - 225 rve PF00665.21 120 3.9e-17 53.8 1.0 1 1 2.6e-18 8e-17 52.8 0.3 4 117 68 174 65 176 0.87 # 4246 # 4920 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_28 - 192 HTH_Mga PF08280.6 59 0.00043 11.4 1.7 1 1 1.9e-05 0.00057 10.9 0.5 2 45 144 186 143 190 0.90 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_20 - 114 HTH_25 PF13413.1 62 3.5e-05 14.7 0.2 1 1 1.7e-06 5.4e-05 14.1 0.2 3 28 8 33 6 41 0.87 # 14296 # 14637 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_8 - 112 HTH_Tnp_1 PF01527.15 76 1e-06 20.0 0.1 1 2 0.064 0.67 1.3 0.0 6 36 19 49 18 56 0.74 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_8 - 112 HTH_Tnp_1 PF01527.15 76 1e-06 20.0 0.1 2 2 1.3e-06 1.3e-05 16.4 0.0 15 42 80 106 78 109 0.88 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_21 - 248 HTH_Tnp_1 PF01527.15 76 0.00014 13.1 0.8 1 2 0.0003 0.0031 8.8 0.0 24 50 2 29 1 57 0.71 # 15497 # 16240 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.293 1_21 - 248 HTH_Tnp_1 PF01527.15 76 0.00014 13.1 0.8 2 2 0.046 0.48 1.8 0.7 36 74 107 146 102 148 0.77 # 15497 # 16240 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.293 1_5 - 225 HTH_Tnp_1 PF01527.15 76 0.00028 12.1 0.3 1 1 5.5e-05 0.00057 11.1 0.3 24 47 29 54 5 73 0.79 # 4246 # 4920 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_20 - 114 Phage_terminase PF10668.4 60 0.00012 13.2 0.5 1 1 6e-06 0.00019 12.5 0.5 24 47 17 40 8 46 0.86 # 14296 # 14637 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_8 - 112 HTH_38 PF13936.1 44 6.6e-09 26.6 1.6 1 2 0.051 0.8 0.7 0.2 6 21 33 48 26 55 0.64 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_8 - 112 HTH_38 PF13936.1 44 6.6e-09 26.6 1.6 2 2 1.3e-09 2.1e-08 25.0 0.1 15 39 82 106 71 107 0.90 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_28 - 192 HTH_38 PF13936.1 44 4e-06 17.6 0.0 1 1 7e-07 1.1e-05 16.3 0.0 13 41 153 181 143 183 0.86 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_8 - 112 Sigma70_r4 PF04545.11 50 2.3e-05 15.0 0.1 1 1 2.5e-06 3.8e-05 14.3 0.1 9 41 72 108 69 110 0.85 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_20 - 114 Sigma70_r4 PF04545.11 50 2.3e-05 15.0 0.1 1 1 4.6e-06 7.2e-05 13.4 0.1 16 41 11 36 5 38 0.85 # 14296 # 14637 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_31 - 328 DDE_Tnp_1 PF01609.16 213 1.9e-35 113.6 0.2 1 1 6.1e-37 1.9e-35 113.6 0.2 8 213 47 294 40 294 0.94 # 26480 # 27463 # -1 # ID=1_31;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.296 1_28 - 192 HTH_Tnp_IS630 PF01710.11 120 8.2e-05 13.6 0.0 1 1 1e-05 0.00016 12.6 0.0 17 42 159 184 137 191 0.85 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_8 - 112 HTH_Tnp_IS630 PF01710.11 120 9.2e-05 13.4 0.8 1 1 7.9e-06 0.00012 13.0 0.2 10 37 79 106 75 111 0.93 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_8 - 112 HTH_40 PF14493.1 91 1.2e-05 16.8 0.6 1 1 1.4e-06 2.1e-05 16.0 0.1 7 31 81 105 78 106 0.93 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_28 - 192 HTH_40 PF14493.1 91 3.4e-05 15.3 0.0 1 1 4.5e-06 7e-05 14.3 0.0 8 39 155 186 153 190 0.89 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_20 - 114 HTH_3 PF01381.17 55 3.5e-18 56.6 0.1 1 1 3.2e-19 4.9e-18 56.1 0.1 1 54 7 60 7 61 0.97 # 14296 # 14637 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_8 - 112 HTH_3 PF01381.17 55 1.4e-06 19.4 0.2 1 1 9.3e-08 1.4e-06 19.4 0.2 6 32 84 110 81 111 0.91 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_5 - 225 DDE_3 PF13358.1 146 5.3e-07 20.7 0.2 1 1 2.2e-08 6.7e-07 20.4 0.2 17 95 67 144 26 197 0.81 # 4246 # 4920 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_5 - 225 DDE_Tnp_IS66 PF03050.9 271 6.4e-09 26.6 1.5 1 2 1.3e-09 3.9e-08 24.0 0.4 15 104 20 103 7 135 0.75 # 4246 # 4920 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_5 - 225 DDE_Tnp_IS66 PF03050.9 271 6.4e-09 26.6 1.5 2 2 0.0084 0.26 1.6 0.0 243 261 163 180 156 189 0.78 # 4246 # 4920 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_28 - 192 TrmB PF01978.14 68 7e-07 20.2 0.1 1 1 2.2e-07 1.7e-06 19.0 0.1 8 48 147 186 144 188 0.78 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_9 - 105 TrmB PF01978.14 68 2.8e-06 18.3 0.0 1 1 6.3e-07 4.9e-06 17.5 0.0 16 63 23 71 22 75 0.92 # 5883 # 6197 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.292 1_8 - 112 TrmB PF01978.14 68 5.1e-05 14.3 0.6 1 1 1.3e-05 9.8e-05 13.4 0.2 17 42 83 107 75 110 0.81 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_3 - 122 TrmB PF01978.14 68 0.00011 13.2 0.1 1 1 8.3e-05 0.00065 10.7 0.0 19 65 52 98 44 101 0.89 # 3171 # 3536 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_20 - 114 HTH_26 PF13443.1 63 1.2e-07 23.1 0.0 1 1 4.8e-09 1.5e-07 22.9 0.0 9 58 14 62 2 66 0.88 # 14296 # 14637 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_10 - 430 Na_sulph_symp PF00939.14 471 6.4e-15 46.1 45.3 1 3 1.3e-11 3.9e-10 30.3 18.8 271 416 4 146 1 153 0.82 # 6197 # 7486 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_10 - 430 Na_sulph_symp PF00939.14 471 6.4e-15 46.1 45.3 2 3 1.5e-08 4.7e-07 20.2 11.8 206 367 165 329 140 381 0.74 # 6197 # 7486 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_10 - 430 Na_sulph_symp PF00939.14 471 6.4e-15 46.1 45.3 3 3 0.00048 0.015 5.3 2.2 198 238 385 424 330 427 0.78 # 6197 # 7486 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_15 - 186 ABC_tran PF00005.22 137 2.6e-35 113.0 0.2 1 1 1.2e-36 3.6e-35 112.5 0.2 9 136 2 136 1 137 0.93 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_8 - 112 HTH_8 PF02954.14 42 0.0001 13.1 0.1 1 1 6.8e-06 0.00021 12.1 0.0 18 37 87 106 80 108 0.85 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_15 - 186 SMC_N PF02463.14 220 7.3e-08 23.1 4.2 1 1 9.4e-09 2.9e-07 21.1 4.2 27 213 7 182 2 185 0.75 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_28 - 192 Trp_repressor PF01371.14 88 4.1e-05 14.8 0.4 1 1 2e-05 0.00032 11.9 0.0 39 76 150 187 146 191 0.87 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_8 - 112 Trp_repressor PF01371.14 88 4.9e-05 14.5 1.3 1 1 3.9e-06 6e-05 14.2 0.4 39 72 78 110 72 110 0.93 # 5487 # 5822 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.304 1_15 - 186 AAA_29 PF13555.1 62 7.7e-07 19.9 0.2 1 1 4.2e-08 1.3e-06 19.2 0.2 22 40 3 21 1 25 0.89 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_22 - 325 RepA_N PF06970.6 76 1.4e-36 115.5 3.8 1 1 1.1e-37 3.5e-36 114.2 3.8 1 76 14 89 14 89 0.98 # 16666 # 17640 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.279 1_5 - 225 HTH_32 PF13565.1 77 1.3e-06 20.5 0.1 1 2 1.7e-06 2.7e-05 16.2 0.1 48 76 25 50 9 51 0.86 # 4246 # 4920 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_5 - 225 HTH_32 PF13565.1 77 1.3e-06 20.5 0.1 2 2 0.053 0.83 1.9 0.0 33 73 140 183 112 185 0.75 # 4246 # 4920 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_28 - 192 HTH_32 PF13565.1 77 5.2e-06 18.5 0.3 1 1 7e-07 1.1e-05 17.5 0.3 19 77 131 181 118 181 0.80 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_13 - 645 MgtE PF01769.11 135 0.037 5.6 19.7 1 2 0.0013 0.04 5.5 6.6 35 107 195 261 185 264 0.89 # 8648 # 10582 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.252 1_13 - 645 MgtE PF01769.11 135 0.037 5.6 19.7 2 2 0.0022 0.067 4.8 5.2 45 104 539 598 522 630 0.88 # 8648 # 10582 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.252 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/4c17901f-1e40-48b9-a5cc-b8e9bdcabeb1 # Target file: checkm_output/bins/pGCA_000756205.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000756205.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4c17901f-1e40-48b9-a5cc-b8e9bdcabeb1 checkm_output/bins/pGCA_000756205.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:52:39 2021 # [ok]