# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_9 - 502 AlaDh_PNT_C PF01262.16 168 1.4e-06 19.6 0.0 1 2 1.8e-07 6.9e-06 17.3 0.0 22 71 2 51 1 84 0.86 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 502 AlaDh_PNT_C PF01262.16 168 1.4e-06 19.6 0.0 2 2 0.083 3.2 -1.2 0.0 108 129 282 303 234 310 0.71 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_31 - 246 KR PF08659.5 181 2.1e-16 51.7 0.0 1 1 7.8e-18 3e-16 51.1 0.0 2 168 8 171 8 202 0.88 # 24545 # 25282 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_6 - 227 DUF258 PF03193.11 161 4.7e-08 24.0 0.0 1 1 2.4e-09 9.4e-08 23.0 0.0 22 55 17 51 3 93 0.87 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_17 - 76 GerE PF00196.14 58 2.9e-05 15.0 0.3 1 1 2.2e-06 2.9e-05 15.0 0.3 19 39 2 22 2 34 0.84 # 13408 # 13635 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.241 1_30 - 190 GerE PF00196.14 58 3.5e-05 14.7 0.0 1 1 5.2e-06 6.8e-05 13.8 0.0 16 40 142 166 132 173 0.88 # 23569 # 24138 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.277 1_35 - 203 GerE PF00196.14 58 0.00013 12.9 0.1 1 1 2e-05 0.00026 11.9 0.1 11 35 168 192 166 196 0.94 # 27934 # 28542 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_6 - 227 TIGR00157 TIGR00157 247 0.00011 13.0 0.2 1 1 5.9e-06 0.00023 12.0 0.0 113 142 21 51 9 59 0.76 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_5 - 370 PTS_EIIA_1 PF00358.15 133 4.7e-05 14.6 2.9 1 4 8.4e-06 0.00033 11.8 0.1 84 117 69 102 65 108 0.87 # 1799 # 2908 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_5 - 370 PTS_EIIA_1 PF00358.15 133 4.7e-05 14.6 2.9 2 4 0.028 1.1 0.4 0.0 90 109 166 185 152 197 0.77 # 1799 # 2908 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_5 - 370 PTS_EIIA_1 PF00358.15 133 4.7e-05 14.6 2.9 3 4 0.045 1.7 -0.2 0.1 83 115 175 205 171 219 0.68 # 1799 # 2908 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_5 - 370 PTS_EIIA_1 PF00358.15 133 4.7e-05 14.6 2.9 4 4 0.085 3.3 -1.1 0.0 14 33 329 348 323 363 0.61 # 1799 # 2908 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_6 - 227 TIGR01978 TIGR01978 243 2.8e-22 70.5 3.0 1 1 7.4e-22 1.5e-20 64.9 3.0 11 223 16 219 7 224 0.74 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_2 - 160 TIGR01978 TIGR01978 243 5.4e-06 17.2 0.1 1 1 3.5e-07 6.8e-06 16.9 0.1 128 219 53 147 36 154 0.75 # 619 # 1098 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.277 1_6 - 227 KaiC PF06745.8 227 3.3e-05 14.6 0.7 1 2 0.00024 0.0095 6.6 0.1 16 35 28 47 20 60 0.88 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 KaiC PF06745.8 227 3.3e-05 14.6 0.7 2 2 0.00024 0.0095 6.6 0.1 137 179 177 217 148 225 0.74 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_17 - 76 Phage_CI_repr PF07022.8 66 0.00018 13.2 0.2 1 1 5.7e-06 0.00022 12.9 0.2 13 34 2 23 1 70 0.76 # 13408 # 13635 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.241 1_12 - 497 TIGR01292 TIGR01292 300 4.1e-06 17.0 0.2 1 2 7.6e-07 3e-05 14.2 0.0 2 53 5 55 4 99 0.75 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_12 - 497 TIGR01292 TIGR01292 300 4.1e-06 17.0 0.2 2 2 0.013 0.5 0.3 0.0 58 217 227 268 223 280 0.52 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_6 - 227 AAA_18 PF13238.1 129 1.8e-06 19.9 0.2 1 1 1.5e-07 6e-06 18.2 0.0 1 42 34 75 34 139 0.68 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_34 - 140 MarR_2 PF12802.2 62 8.1e-14 42.7 0.0 1 1 2.7e-15 1.1e-13 42.4 0.0 1 61 29 87 29 88 0.95 # 27244 # 27663 # 1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_12 - 497 FAD_oxidored PF12831.2 428 1.9e-11 35.2 0.0 1 2 4.5e-11 8.7e-10 29.7 0.0 1 38 5 42 5 121 0.84 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_12 - 497 FAD_oxidored PF12831.2 428 1.9e-11 35.2 0.0 2 2 0.0039 0.075 3.5 0.0 90 142 226 276 203 278 0.83 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_9 - 502 FAD_oxidored PF12831.2 428 4.9e-06 17.3 0.0 1 1 3.7e-07 7.2e-06 16.8 0.0 2 38 3 39 2 83 0.93 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_12 - 497 TIGR00275 TIGR00275 401 1.7e-10 31.5 0.7 1 2 6.2e-09 1.2e-07 22.1 0.4 1 37 6 42 6 44 0.97 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_12 - 497 TIGR00275 TIGR00275 401 1.7e-10 31.5 0.7 2 2 0.00024 0.0048 6.9 0.0 106 154 226 277 208 279 0.79 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_9 - 502 TIGR00275 TIGR00275 401 4.8e-09 26.7 1.1 1 2 9.2e-10 1.8e-08 24.8 0.4 1 35 3 37 3 41 0.94 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 502 TIGR00275 TIGR00275 401 4.8e-09 26.7 1.1 2 2 0.039 0.76 -0.3 0.0 109 153 225 272 217 276 0.70 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_6 - 227 TIGR03598 TIGR03598 186 0.00014 12.8 0.7 1 1 8.3e-06 0.00033 11.7 0.0 16 38 29 51 3 55 0.89 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_34 - 140 HTH_Crp_2 PF13545.1 76 0.00023 12.6 0.0 1 1 9.9e-06 0.00039 11.8 0.0 32 67 51 91 42 99 0.82 # 27244 # 27663 # 1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_9 - 502 TIGR00562 TIGR00562 470 4.9e-13 39.6 0.2 1 3 4.5e-13 8.7e-12 35.5 0.0 4 60 2 56 1 120 0.84 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 502 TIGR00562 TIGR00562 470 4.9e-13 39.6 0.2 2 3 0.061 1.2 -1.2 0.1 276 321 270 319 214 423 0.48 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 502 TIGR00562 TIGR00562 470 4.9e-13 39.6 0.2 3 3 0.019 0.36 0.5 0.0 431 465 459 494 446 498 0.86 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_12 - 497 TIGR00562 TIGR00562 470 3.7e-10 30.1 0.2 1 1 4.4e-11 8.6e-10 28.9 0.0 2 109 3 109 2 146 0.77 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_6 - 227 AAA_22 PF13401.1 131 7.4e-07 21.0 0.6 1 2 2.4e-06 9.4e-05 14.2 0.1 3 22 30 49 28 52 0.87 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 AAA_22 PF13401.1 131 7.4e-07 21.0 0.6 2 2 0.0017 0.065 5.0 0.0 73 124 146 200 92 207 0.76 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_37 - 62 HTH_19 PF12844.2 64 2e-20 64.3 0.2 1 1 1.1e-21 2.2e-20 64.1 0.2 2 59 3 60 3 61 0.98 # 29135 # 29320 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.258 1_25 - 434 HTH_19 PF12844.2 64 0.00047 11.8 4.3 1 2 0.0094 0.18 3.5 0.3 13 61 8 63 2 64 0.78 # 17858 # 19159 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.270 1_25 - 434 HTH_19 PF12844.2 64 0.00047 11.8 4.3 2 2 0.00022 0.0043 8.7 0.1 11 58 227 274 214 279 0.90 # 17858 # 19159 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.270 1_8 - 327 Chal_sti_synt_C PF02797.10 151 3.1e-05 15.5 0.0 1 1 1.7e-06 6.5e-05 14.5 0.0 15 148 200 323 195 325 0.79 # 4900 # 5880 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_9 - 502 NAD_binding_2 PF03446.10 163 0.00016 13.1 0.2 1 1 8.4e-06 0.00033 12.1 0.2 2 35 1 34 1 72 0.87 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 502 FMO-like PF00743.14 532 2.8e-05 14.0 0.0 1 1 1.1e-06 4.2e-05 13.4 0.0 3 70 2 78 1 118 0.67 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_30 - 190 Sigma70_r4_2 PF08281.7 54 9.5e-15 45.5 0.1 1 1 7.7e-16 1.5e-14 44.8 0.1 2 54 120 172 119 172 0.92 # 23569 # 24138 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.277 1_17 - 76 Sigma70_r4_2 PF08281.7 54 5.6e-05 14.2 0.0 1 1 5.6e-06 0.00011 13.3 0.0 28 50 3 25 2 25 0.92 # 13408 # 13635 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.241 1_39 - 104 HTH_30 PF13556.1 59 1.3e-06 19.6 0.0 1 2 2.1e-07 8.1e-06 17.0 0.0 3 39 23 59 22 75 0.86 # 29739 # 30050 # -1 # ID=1_39;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.266 1_39 - 104 HTH_30 PF13556.1 59 1.3e-06 19.6 0.0 2 2 0.028 1.1 0.6 0.0 41 54 83 96 70 97 0.84 # 29739 # 30050 # -1 # ID=1_39;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.266 1_6 - 227 Arch_ATPase PF01637.13 234 1.9e-05 16.0 0.6 1 1 1.2e-06 4.6e-05 14.7 0.6 10 82 23 92 18 216 0.67 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_12 - 497 DAO PF01266.19 358 1.4e-12 38.7 0.1 1 2 6.6e-08 1.3e-06 19.1 0.4 2 35 6 40 5 45 0.93 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_12 - 497 DAO PF01266.19 358 1.4e-12 38.7 0.1 2 2 3.1e-07 5.9e-06 16.9 0.0 117 196 201 277 191 284 0.89 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_9 - 502 DAO PF01266.19 358 8e-12 36.2 0.0 1 2 3.4e-11 6.7e-10 29.9 0.0 1 176 2 251 2 277 0.81 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 502 DAO PF01266.19 358 8e-12 36.2 0.0 2 2 0.021 0.4 1.0 0.0 312 357 442 491 352 492 0.88 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_30 - 190 Sigma70_r2 PF04542.9 71 9.1e-19 58.5 0.0 1 1 3.8e-20 1.5e-18 57.9 0.0 1 69 23 90 23 91 0.98 # 23569 # 24138 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.277 1_6 - 227 TIGR00041 TIGR00041 196 0.00013 13.0 0.3 1 2 9.4e-06 0.00037 11.5 0.1 1 24 28 51 28 64 0.91 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 TIGR00041 TIGR00041 196 0.00013 13.0 0.3 2 2 0.09 3.5 -1.5 0.0 167 189 181 204 161 225 0.59 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_28 - 492 TIGR01085 TIGR01085 472 4.3e-63 205.0 1.9 1 1 1.3e-64 5.1e-63 204.8 1.9 5 471 32 486 28 487 0.85 # 21127 # 22602 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.297 1_9 - 502 TIGR01317 TIGR01317 485 9.8e-10 29.0 0.3 1 2 1.4e-10 2.8e-09 27.5 0.1 145 182 2 39 1 45 0.95 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 502 TIGR01317 TIGR01317 485 9.8e-10 29.0 0.3 2 2 0.086 1.7 -1.4 0.0 384 434 290 340 281 354 0.82 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_12 - 497 TIGR01317 TIGR01317 485 1.2e-07 22.1 0.1 1 1 1e-08 2e-07 21.4 0.1 144 183 4 43 2 58 0.88 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_6 - 227 AAA_23 PF13476.1 202 5.7e-05 15.0 6.2 1 1 2.4e-06 9.2e-05 14.4 6.2 10 86 21 99 16 211 0.62 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_37 - 62 HTH_31 PF13560.1 64 3.2e-13 41.3 0.0 1 1 9.5e-15 3.7e-13 41.1 0.0 5 60 4 58 3 60 0.97 # 29135 # 29320 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.258 1_35 - 203 HTH_22 PF13309.1 64 1.6e-07 22.7 1.5 1 3 0.054 1.1 0.8 0.0 23 38 71 86 62 95 0.84 # 27934 # 28542 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_35 - 203 HTH_22 PF13309.1 64 1.6e-07 22.7 1.5 2 3 0.002 0.039 5.4 0.2 3 41 109 147 107 149 0.93 # 27934 # 28542 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_35 - 203 HTH_22 PF13309.1 64 1.6e-07 22.7 1.5 3 3 5.5e-06 0.00011 13.6 0.0 43 61 176 194 171 195 0.94 # 27934 # 28542 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_17 - 76 HTH_22 PF13309.1 64 7.4e-06 17.3 0.6 1 1 1.3e-06 2.5e-05 15.6 0.0 43 62 2 21 1 23 0.91 # 13408 # 13635 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.241 1_31 - 246 adh_short PF00106.20 167 4.1e-35 112.7 0.0 1 1 1.5e-36 5.9e-35 112.2 0.0 1 165 7 169 7 171 0.93 # 24545 # 25282 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_37 - 62 HTH_37 PF13744.1 80 1.7e-06 19.4 0.4 1 1 5e-08 2e-06 19.2 0.4 22 56 4 38 1 53 0.93 # 29135 # 29320 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.258 1_12 - 497 Pyr_redox_2 PF07992.9 201 5.8e-09 27.6 0.0 1 1 1e-09 2e-08 25.9 0.0 1 37 5 41 5 122 0.90 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_9 - 502 Pyr_redox_2 PF07992.9 201 1.4e-07 23.1 0.0 1 2 1.3e-07 2.5e-06 19.0 0.0 1 41 2 42 2 93 0.86 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 502 Pyr_redox_2 PF07992.9 201 1.4e-07 23.1 0.0 2 2 0.027 0.53 1.7 0.0 67 115 230 273 192 276 0.75 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_18 - 324 HTH_36 PF13730.1 55 5e-07 21.4 0.4 1 1 6.4e-08 1.2e-06 20.2 0.4 1 52 28 91 28 94 0.93 # 14127 # 15098 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_37 - 62 HTH_36 PF13730.1 55 0.00013 13.7 0.1 1 1 1.3e-05 0.00025 12.8 0.1 22 43 13 31 2 33 0.83 # 29135 # 29320 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.258 1_9 - 502 FAD_binding_3 PF01494.14 356 0.00031 11.4 0.2 1 1 1.4e-05 0.00054 10.6 0.2 3 34 2 33 1 38 0.90 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_34 - 140 Penicillinase_R PF03965.11 115 0.0002 13.1 0.0 1 1 7.7e-06 0.0003 12.5 0.0 1 58 31 84 31 126 0.83 # 27244 # 27663 # 1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_6 - 227 AAA_33 PF13671.1 143 0.0001 13.8 0.1 1 1 3.3e-06 0.00013 13.5 0.1 2 18 34 50 33 206 0.89 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_9 - 502 NAD_Gly3P_dh_N PF01210.18 157 2.4e-06 18.9 0.0 1 1 1.3e-07 5e-06 17.9 0.0 1 40 2 41 2 62 0.84 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_28 - 492 TIGR01143 TIGR01143 418 3.2e-16 50.4 7.1 1 3 0.034 1.3 -1.0 0.0 169 206 27 63 21 86 0.73 # 21127 # 22602 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.297 1_28 - 492 TIGR01143 TIGR01143 418 3.2e-16 50.4 7.1 2 3 7e-08 2.7e-06 17.7 1.1 75 105 114 144 56 174 0.80 # 21127 # 22602 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.297 1_28 - 492 TIGR01143 TIGR01143 418 3.2e-16 50.4 7.1 3 3 2.7e-13 1e-11 35.6 0.2 146 332 203 379 181 462 0.86 # 21127 # 22602 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.297 1_28 - 492 TIGR01499 TIGR01499 400 4.6e-11 33.9 2.8 1 2 6.8e-08 2.7e-06 18.2 0.4 15 48 110 143 97 145 0.85 # 21127 # 22602 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.297 1_28 - 492 TIGR01499 TIGR01499 400 4.6e-11 33.9 2.8 2 2 4.5e-07 1.7e-05 15.5 0.1 87 300 162 363 151 396 0.76 # 21127 # 22602 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.297 1_12 - 497 3HCDH_N PF02737.13 180 1.9e-05 16.0 0.4 1 1 2.6e-06 5.1e-05 14.5 0.4 1 33 5 37 5 48 0.91 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_9 - 502 3HCDH_N PF02737.13 180 0.00014 13.1 0.2 1 1 1.7e-05 0.00034 11.9 0.2 1 34 2 35 2 49 0.88 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_6 - 227 AAA_17 PF13207.1 121 3.2e-06 19.6 0.3 1 1 1.9e-07 7.5e-06 18.4 0.3 2 19 34 51 33 121 0.92 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_9 - 502 IlvN PF07991.7 165 0.00024 12.0 1.5 1 1 1.6e-05 0.00063 10.7 0.8 6 52 2 50 1 102 0.84 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_34 - 140 B-block_TFIIIC PF04182.7 75 2.3e-05 15.8 0.8 1 2 0.0079 0.31 2.6 0.1 29 48 12 31 4 47 0.83 # 27244 # 27663 # 1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_34 - 140 B-block_TFIIIC PF04182.7 75 2.3e-05 15.8 0.8 2 2 1.3e-05 0.0005 11.6 0.1 25 54 54 83 47 100 0.80 # 27244 # 27663 # 1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_9 - 502 Amino_oxidase PF01593.19 450 4.4e-24 76.8 0.0 1 2 7.9e-21 1.5e-19 61.8 0.0 1 288 10 305 10 392 0.82 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 502 Amino_oxidase PF01593.19 450 4.4e-24 76.8 0.0 2 2 4.9e-06 9.5e-05 13.1 0.0 395 450 440 494 433 494 0.86 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_12 - 497 Amino_oxidase PF01593.19 450 4.4e-18 57.0 0.0 1 2 6.9e-17 1.3e-15 48.8 0.0 1 263 13 282 13 321 0.75 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_12 - 497 Amino_oxidase PF01593.19 450 4.4e-18 57.0 0.0 2 2 0.00065 0.013 6.1 0.0 415 450 459 491 438 491 0.85 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_33 - 324 ADH_N PF08240.7 109 4.3e-11 34.2 0.0 1 2 8.8e-11 3.4e-09 28.1 0.0 2 61 29 86 28 91 0.90 # 26149 # 27120 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_33 - 324 ADH_N PF08240.7 109 4.3e-11 34.2 0.0 2 2 0.0025 0.097 4.1 0.0 87 109 91 113 87 113 0.86 # 26149 # 27120 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_34 - 140 HTH_34 PF13601.1 80 0.00014 13.5 0.1 1 1 1.4e-05 0.00027 12.6 0.1 4 63 37 95 34 107 0.87 # 27244 # 27663 # 1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_24 - 116 HTH_34 PF13601.1 80 0.00018 13.1 0.1 1 1 1.4e-05 0.00027 12.6 0.1 2 49 44 91 43 95 0.92 # 17345 # 17692 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.264 1_35 - 203 HTH_29 PF13551.1 112 2.3e-06 19.3 0.1 1 2 0.086 3.4 -0.5 0.0 20 55 115 150 106 164 0.63 # 27934 # 28542 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_35 - 203 HTH_29 PF13551.1 112 2.3e-06 19.3 0.1 2 2 3.3e-07 1.3e-05 16.9 0.0 3 34 167 197 166 199 0.91 # 27934 # 28542 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_34 - 140 MarR PF01047.17 59 6.3e-15 46.3 0.0 1 1 2.6e-16 1e-14 45.7 0.0 1 59 31 89 31 89 0.98 # 27244 # 27663 # 1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_24 - 116 HTH_20 PF12840.2 61 0.00014 13.2 0.0 1 1 5.2e-06 0.0002 12.8 0.0 15 54 48 86 35 90 0.90 # 17345 # 17692 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.264 1_8 - 327 ACP_syn_III PF08545.5 80 1.9e-33 105.6 0.4 1 1 9.4e-35 3.7e-33 104.7 0.4 2 80 109 186 108 186 0.95 # 4900 # 5880 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_6 - 227 ArgK PF03308.11 267 0.00014 12.2 0.0 1 1 6.3e-06 0.00024 11.4 0.0 14 50 16 52 1 60 0.81 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_24 - 116 HTH_5 PF01022.15 47 1.3e-17 54.8 1.2 1 1 5.7e-19 2.2e-17 54.1 1.2 1 45 41 86 41 88 0.95 # 17345 # 17692 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.264 1_22 - 143 TIGR00329 TIGR00329 305 0.00031 11.3 0.1 1 1 8.7e-06 0.00034 11.1 0.1 156 225 14 87 3 123 0.79 # 15954 # 16382 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.259 1_33 - 324 TIGR02817 TIGR02817 336 1.8e-18 58.2 0.0 1 1 6.9e-20 2.7e-18 57.7 0.0 22 215 21 218 8 231 0.85 # 26149 # 27120 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_17 - 76 Terminase_5 PF06056.7 58 5.7e-05 14.3 0.0 1 1 4.7e-06 9.1e-05 13.6 0.0 16 36 4 24 3 34 0.90 # 13408 # 13635 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.241 1_30 - 190 Terminase_5 PF06056.7 58 0.0001 13.4 0.0 1 1 1.1e-05 0.00021 12.5 0.0 8 32 139 163 132 164 0.89 # 23569 # 24138 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.277 1_12 - 497 Pyr_redox_3 PF13738.1 203 7.8e-09 27.4 0.0 1 2 7.7e-08 1.5e-06 19.9 0.0 1 41 7 46 7 109 0.88 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_12 - 497 Pyr_redox_3 PF13738.1 203 7.8e-09 27.4 0.0 2 2 0.0024 0.047 5.3 0.0 82 134 226 280 194 309 0.79 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_9 - 502 Pyr_redox_3 PF13738.1 203 4.4e-07 21.7 0.0 1 1 3.9e-08 7.5e-07 20.9 0.0 1 42 4 44 4 142 0.76 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_30 - 190 HTH_24 PF13412.1 48 5.2e-08 23.8 0.1 1 1 1.3e-08 1.3e-07 22.6 0.1 1 39 129 166 129 167 0.94 # 23569 # 24138 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.277 1_37 - 62 HTH_24 PF13412.1 48 4.9e-06 17.5 0.2 1 1 6.6e-07 6.5e-06 17.1 0.2 13 36 9 32 5 33 0.88 # 29135 # 29320 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.258 1_34 - 140 HTH_24 PF13412.1 48 7.4e-05 13.7 0.0 1 1 1.4e-05 0.00013 12.9 0.0 8 48 38 78 32 78 0.89 # 27244 # 27663 # 1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_24 - 116 HTH_24 PF13412.1 48 0.00012 13.0 1.8 1 2 0.095 0.92 0.6 0.0 33 44 16 27 15 28 0.88 # 17345 # 17692 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.264 1_24 - 116 HTH_24 PF13412.1 48 0.00012 13.0 1.8 2 2 6.5e-05 0.00064 10.8 0.5 2 45 41 84 41 87 0.84 # 17345 # 17692 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.264 1_6 - 227 AAA_21 PF13304.1 303 3.8e-17 54.7 2.8 1 1 1e-15 3.9e-14 44.8 2.8 1 298 33 201 33 205 0.67 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_12 - 497 FAD_binding_2 PF00890.19 417 5.9e-12 36.6 0.4 1 2 2.1e-09 4e-08 24.0 0.7 2 36 6 40 5 44 0.93 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_12 - 497 FAD_binding_2 PF00890.19 417 5.9e-12 36.6 0.4 2 2 3.2e-05 0.00061 10.2 0.0 139 182 224 268 158 284 0.82 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_9 - 502 FAD_binding_2 PF00890.19 417 1e-06 19.4 0.7 1 1 9.3e-08 1.8e-06 18.5 0.4 2 36 3 37 2 43 0.93 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_39 - 104 DUF2089 PF09862.4 113 6.8e-16 49.7 0.3 1 1 4e-17 7.9e-16 49.5 0.3 30 86 13 69 3 94 0.79 # 29739 # 30050 # -1 # ID=1_39;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.266 1_30 - 190 DUF2089 PF09862.4 113 3.4e-05 15.2 1.4 1 1 3.2e-06 6.2e-05 14.4 0.4 30 84 125 181 118 189 0.80 # 23569 # 24138 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.277 1_7 - 392 Yip1 PF04893.12 172 5.7e-07 20.7 3.0 1 2 0.0092 0.36 1.9 0.0 9 51 12 53 9 75 0.57 # 3582 # 4757 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_7 - 392 Yip1 PF04893.12 172 5.7e-07 20.7 3.0 2 2 1.1e-07 4.2e-06 17.9 1.7 18 117 258 376 224 382 0.77 # 3582 # 4757 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_12 - 497 UvrC_HhH_N PF08459.6 155 2.6e-05 15.4 0.0 1 1 1.8e-06 7e-05 14.0 0.0 53 122 163 263 105 274 0.85 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_30 - 190 TIGR02980 TIGR02980 227 1.8e-06 19.0 0.3 1 1 8.9e-08 3.5e-06 18.1 0.3 153 222 105 172 79 177 0.72 # 23569 # 24138 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.277 1_30 - 190 DUF1027 PF06265.6 86 0.00029 12.3 1.8 1 1 1e-05 0.0004 11.9 0.2 4 76 4 78 1 83 0.79 # 23569 # 24138 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.277 1_9 - 502 UDPG_MGDP_dh_N PF03721.9 185 5.7e-05 14.1 0.2 1 1 3.1e-06 0.00012 13.0 0.2 1 35 1 35 1 47 0.87 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_6 - 227 IstB_IS21 PF01695.12 178 1e-05 16.6 0.1 1 2 3.3e-05 0.0013 9.7 0.0 44 68 28 52 3 62 0.79 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 IstB_IS21 PF01695.12 178 1e-05 16.6 0.1 2 2 0.00093 0.036 5.0 0.0 95 152 146 205 120 213 0.72 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_39 - 104 HTH_10 PF04967.7 53 0.00014 13.1 0.0 1 1 6.2e-06 0.00024 12.3 0.0 25 51 34 60 32 62 0.93 # 29739 # 30050 # -1 # ID=1_39;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.266 1_35 - 203 HTH_7 PF02796.10 45 2.8e-21 66.8 0.4 1 1 2.1e-22 2.8e-21 66.8 0.4 1 44 147 198 147 199 0.95 # 27934 # 28542 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_17 - 76 HTH_7 PF02796.10 45 1.3e-06 19.8 0.0 1 1 2.8e-07 3.7e-06 18.4 0.0 23 39 3 19 2 20 0.93 # 13408 # 13635 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.241 1_37 - 62 HTH_7 PF02796.10 45 2.2e-05 15.9 0.1 1 1 7.2e-06 9.3e-05 13.9 0.2 18 38 9 30 2 31 0.79 # 29135 # 29320 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.258 1_6 - 227 SbcCD_C PF13558.1 90 7.4e-05 14.3 0.2 1 1 1.3e-05 0.00052 11.6 0.2 55 88 157 184 133 186 0.76 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_34 - 140 DUF2250 PF10007.4 93 6.4e-05 14.5 0.1 1 1 3.2e-06 0.00012 13.5 0.1 7 58 32 83 26 130 0.83 # 27244 # 27663 # 1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_5 - 370 S1 PF00575.18 74 0.00026 12.7 10.0 1 3 0.0019 0.073 4.9 0.2 47 61 199 213 181 226 0.83 # 1799 # 2908 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_5 - 370 S1 PF00575.18 74 0.00026 12.7 10.0 2 3 3.9e-05 0.0015 10.2 1.4 9 70 278 340 270 342 0.84 # 1799 # 2908 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_5 - 370 S1 PF00575.18 74 0.00026 12.7 10.0 3 3 0.023 0.9 1.4 0.1 41 57 351 367 346 368 0.87 # 1799 # 2908 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_9 - 502 GMC_oxred_N PF00732.14 296 0.00014 12.6 0.0 1 2 0.0018 0.069 3.8 0.0 4 25 4 25 1 76 0.81 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 502 GMC_oxred_N PF00732.14 296 0.00014 12.6 0.0 2 2 0.00024 0.0094 6.6 0.0 202 234 231 263 223 276 0.83 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_39 - 104 Phage_antitermQ PF06530.7 126 2.7e-05 15.3 0.0 1 1 1.2e-06 4.6e-05 14.6 0.0 60 107 14 61 7 65 0.87 # 29739 # 30050 # -1 # ID=1_39;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.266 1_3 - 81 CUE PF02845.11 42 0.00012 13.1 0.0 1 1 4.8e-06 0.00019 12.6 0.0 1 16 33 48 33 51 0.88 # 1077 # 1319 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.206 1_9 - 502 Thi4 PF01946.12 230 4.1e-06 17.6 0.3 1 1 5.7e-07 1.1e-05 16.2 0.1 19 56 2 39 1 63 0.91 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_12 - 497 Thi4 PF01946.12 230 0.00034 11.3 0.6 1 1 4e-05 0.00079 10.1 0.2 18 54 4 40 1 44 0.93 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_6 - 227 AAA_10 PF12846.2 304 2.9e-09 28.3 1.1 1 2 1.9e-06 7.3e-05 13.8 0.3 4 21 34 51 32 65 0.78 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 AAA_10 PF12846.2 304 2.9e-09 28.3 1.1 2 2 2.6e-06 0.0001 13.4 0.0 214 262 142 201 61 211 0.74 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_8 - 327 ACP_syn_III_C PF08541.5 90 1.5e-33 106.4 0.0 1 1 1.1e-34 4.4e-33 104.9 0.0 1 90 235 324 235 324 0.99 # 4900 # 5880 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_6 - 227 AAA_16 PF13191.1 185 4.5e-07 21.6 0.0 1 1 1.4e-08 5.3e-07 21.3 0.0 19 70 26 75 13 164 0.84 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_31 - 246 Epimerase PF01370.16 236 8.7e-07 20.1 0.3 1 1 1e-07 2e-06 19.0 0.2 1 98 9 117 9 197 0.75 # 24545 # 25282 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_33 - 324 Epimerase PF01370.16 236 0.00013 13.0 0.0 1 1 1e-05 0.0002 12.4 0.0 1 39 152 191 152 216 0.80 # 26149 # 27120 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_9 - 502 Pyr_redox PF00070.22 80 3.6e-09 28.6 0.5 1 2 2.1e-08 4.1e-07 22.0 0.1 1 38 2 39 2 46 0.91 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 502 Pyr_redox PF00070.22 80 3.6e-09 28.6 0.5 2 2 0.013 0.25 3.5 0.0 47 67 229 249 223 264 0.77 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_12 - 497 Pyr_redox PF00070.22 80 8e-08 24.3 2.4 1 2 9.5e-06 0.00019 13.5 0.3 2 36 6 40 5 49 0.91 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_12 - 497 Pyr_redox PF00070.22 80 8e-08 24.3 2.4 2 2 0.00011 0.0022 10.0 0.1 42 77 228 265 225 269 0.84 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_33 - 324 NmrA PF05368.8 233 5.4e-06 17.3 0.6 1 1 2.9e-07 1.1e-05 16.3 0.6 1 52 152 205 152 275 0.90 # 26149 # 27120 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_35 - 203 HTH_23 PF13384.1 50 5.4e-10 30.4 0.1 1 1 1.4e-10 1.3e-09 29.1 0.1 4 39 162 197 159 201 0.90 # 27934 # 28542 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_17 - 76 HTH_23 PF13384.1 50 8.3e-07 20.2 0.0 1 1 1.5e-07 1.5e-06 19.4 0.0 19 40 3 24 2 32 0.89 # 13408 # 13635 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.241 1_37 - 62 HTH_23 PF13384.1 50 5e-06 17.7 0.0 1 1 6.9e-07 6.7e-06 17.3 0.0 13 35 7 31 4 39 0.83 # 29135 # 29320 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.258 1_30 - 190 HTH_23 PF13384.1 50 6e-05 14.3 0.0 1 1 1.3e-05 0.00012 13.3 0.0 10 35 136 162 129 170 0.80 # 23569 # 24138 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.277 1_30 - 190 TIGR02941 TIGR02941 255 2.1e-06 18.6 3.2 1 2 0.00018 0.0072 7.0 0.2 12 61 4 50 1 65 0.83 # 23569 # 24138 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.277 1_30 - 190 TIGR02941 TIGR02941 255 2.1e-06 18.6 3.2 2 2 3.5e-06 0.00014 12.7 0.3 199 251 122 174 83 178 0.83 # 23569 # 24138 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.277 1_6 - 227 T2SE PF00437.15 272 3.7e-06 17.5 0.1 1 2 1.5e-06 5.9e-05 13.6 0.0 104 148 7 51 2 56 0.86 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 T2SE PF00437.15 272 3.7e-06 17.5 0.1 2 2 0.0053 0.21 2.0 0.1 69 134 91 165 75 202 0.77 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_30 - 190 Sigma70_ECF PF07638.6 185 1.6e-07 22.7 0.0 1 1 6.4e-09 2.5e-07 22.1 0.0 123 175 115 168 11 177 0.76 # 23569 # 24138 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.277 1_30 - 190 UPF0122 PF04297.9 101 4.2e-07 21.6 4.7 1 2 0.045 0.87 1.3 0.2 6 19 19 32 14 46 0.84 # 23569 # 24138 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.277 1_30 - 190 UPF0122 PF04297.9 101 4.2e-07 21.6 4.7 2 2 2.7e-08 5.3e-07 21.3 0.5 16 67 127 178 117 189 0.90 # 23569 # 24138 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.277 1_17 - 76 UPF0122 PF04297.9 101 7.5e-06 17.6 2.4 1 1 5.7e-07 1.1e-05 17.0 2.4 35 70 3 38 2 71 0.74 # 13408 # 13635 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.241 1_28 - 492 TIGR01082 TIGR01082 449 1.1e-17 55.4 10.5 1 2 1.3e-08 5.2e-07 20.2 1.9 102 134 115 146 101 162 0.84 # 21127 # 22602 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.297 1_28 - 492 TIGR01082 TIGR01082 449 1.1e-17 55.4 10.5 2 2 1.6e-14 6.2e-13 39.8 1.5 149 343 185 368 171 377 0.79 # 21127 # 22602 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.297 1_36 - 113 tRNA_anti-like PF12869.2 144 0.00043 11.4 0.1 1 2 0.0021 0.08 4.0 0.0 8 43 3 39 1 55 0.78 # 28792 # 29130 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.251 1_36 - 113 tRNA_anti-like PF12869.2 144 0.00043 11.4 0.1 2 2 0.00081 0.032 5.3 0.0 6 26 86 107 82 111 0.78 # 28792 # 29130 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.251 1_6 - 227 TIGR02168 TIGR02168 1181 0.0004 9.3 2.0 1 2 0.00012 0.0047 5.8 0.3 18 39 25 47 22 51 0.79 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 TIGR02168 TIGR02168 1181 0.0004 9.3 2.0 2 2 0.00081 0.032 3.1 0.1 1116 1164 162 212 140 214 0.81 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_33 - 324 DapB_N PF01113.15 124 2.3e-05 15.9 1.0 1 1 1e-06 4e-05 15.1 0.2 3 97 152 242 150 250 0.78 # 26149 # 27120 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_8 - 327 Thiolase_N PF00108.18 264 3.5e-06 17.7 0.0 1 1 1.4e-07 5.5e-06 17.0 0.0 10 125 37 151 35 168 0.86 # 4900 # 5880 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_37 - 62 HTH_11 PF08279.7 55 7.1e-08 23.7 0.2 1 1 7.9e-09 1e-07 23.2 0.2 10 32 9 30 2 32 0.81 # 29135 # 29320 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.258 1_17 - 76 HTH_11 PF08279.7 55 3.1e-07 21.6 1.1 1 2 6.2e-07 8.1e-06 17.1 0.0 17 37 3 23 3 35 0.88 # 13408 # 13635 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.241 1_17 - 76 HTH_11 PF08279.7 55 3.1e-07 21.6 1.1 2 2 0.017 0.22 2.9 0.8 30 51 44 65 42 67 0.82 # 13408 # 13635 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.241 1_35 - 203 HTH_11 PF08279.7 55 7.1e-05 14.1 0.1 1 1 2.5e-05 0.00033 11.9 0.1 18 34 178 194 166 195 0.77 # 27934 # 28542 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_28 - 492 TIGR01087 TIGR01087 441 4.7e-22 69.8 7.9 1 2 4.2e-11 1.6e-09 28.5 2.3 95 141 103 150 101 164 0.88 # 21127 # 22602 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.297 1_28 - 492 TIGR01087 TIGR01087 441 4.7e-22 69.8 7.9 2 2 7e-16 2.7e-14 44.2 0.3 147 312 180 338 169 352 0.81 # 21127 # 22602 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.297 1_31 - 246 adh_short_C2 PF13561.1 241 1.6e-18 58.9 0.1 1 1 5.3e-20 2.1e-18 58.5 0.1 5 192 15 200 13 221 0.89 # 24545 # 25282 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_12 - 497 TIGR00137 TIGR00137 433 3.7e-06 17.2 0.4 1 2 9.3e-07 1.8e-05 14.9 0.2 2 31 5 34 4 39 0.93 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_12 - 497 TIGR00137 TIGR00137 433 3.7e-06 17.2 0.4 2 2 0.045 0.88 -0.6 0.0 191 223 387 420 382 440 0.84 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_9 - 502 TIGR00137 TIGR00137 433 5.7e-05 13.2 0.1 1 1 5.3e-06 0.0001 12.4 0.1 2 31 2 31 1 38 0.93 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_35 - 203 HTH_28 PF13518.1 52 3.2e-09 28.3 0.1 1 1 4e-10 7.9e-09 27.1 0.1 3 34 166 197 166 198 0.95 # 27934 # 28542 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_39 - 104 HTH_28 PF13518.1 52 0.00022 12.8 0.0 1 1 1.9e-05 0.00037 12.1 0.0 9 33 29 53 25 65 0.89 # 29739 # 30050 # -1 # ID=1_39;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.266 1_5 - 370 HlyD PF00529.15 305 1.3e-05 16.1 11.8 1 2 1.1e-06 4.4e-05 14.4 0.3 15 50 74 107 66 118 0.80 # 1799 # 2908 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_5 - 370 HlyD PF00529.15 305 1.3e-05 16.1 11.8 2 2 0.0062 0.24 2.1 9.7 127 235 120 212 99 237 0.63 # 1799 # 2908 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_33 - 324 ADH_zinc_N PF00107.21 130 4.2e-17 53.5 0.0 1 1 2.1e-18 8.4e-17 52.5 0.0 1 117 160 270 160 285 0.90 # 26149 # 27120 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_17 - 76 HTH_Tnp_1_2 PF13022.1 142 3e-05 15.4 0.3 1 1 8.5e-07 3.3e-05 15.3 0.3 35 89 2 54 1 74 0.62 # 13408 # 13635 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.241 1_6 - 227 AAA_25 PF13481.1 194 3.2e-07 21.5 0.0 1 2 1.4e-06 5.3e-05 14.2 0.0 23 50 18 48 3 71 0.80 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 AAA_25 PF13481.1 194 3.2e-07 21.5 0.0 2 2 0.00071 0.028 5.4 0.0 162 192 174 204 136 206 0.81 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_12 - 497 HI0933_like PF03486.9 409 1e-09 28.9 1.0 1 2 2.1e-09 4.1e-08 23.6 0.5 2 39 5 42 4 44 0.96 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_12 - 497 HI0933_like PF03486.9 409 1e-09 28.9 1.0 2 2 0.0027 0.053 3.4 0.0 109 159 226 277 211 280 0.80 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_9 - 502 HI0933_like PF03486.9 409 1.4e-08 25.1 1.2 1 1 1.1e-09 2.2e-08 24.4 0.6 2 38 2 38 1 41 0.93 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_6 - 227 MMR_HSR1 PF01926.18 116 7e-07 20.8 1.4 1 1 1.6e-07 6.3e-06 17.8 1.4 2 88 34 216 33 226 0.54 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_31 - 246 NAD_binding_10 PF13460.1 183 3.5e-10 31.7 0.1 1 1 2.7e-11 5.3e-10 31.1 0.1 1 178 9 222 9 227 0.76 # 24545 # 25282 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_33 - 324 NAD_binding_10 PF13460.1 183 7.3e-06 17.7 0.1 1 1 5.1e-07 1e-05 17.2 0.1 1 38 152 192 152 240 0.88 # 26149 # 27120 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_6 - 227 Rad17 PF03215.10 519 1.1e-06 19.1 0.0 1 1 5.2e-08 2e-06 18.2 0.0 44 98 30 86 6 103 0.80 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_35 - 203 CENP-B_N PF04218.8 53 3.8e-08 24.3 3.0 1 2 0.00084 0.016 6.3 0.3 13 35 117 139 115 142 0.85 # 27934 # 28542 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_35 - 203 CENP-B_N PF04218.8 53 3.8e-08 24.3 3.0 2 2 1.7e-07 3.3e-06 18.1 0.1 14 46 167 199 166 200 0.91 # 27934 # 28542 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_37 - 62 CENP-B_N PF04218.8 53 1.6e-05 15.9 0.4 1 1 1.1e-06 2.2e-05 15.5 0.4 17 47 6 38 3 39 0.83 # 29135 # 29320 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.258 1_9 - 502 NAD_binding_9 PF13454.1 156 6.4e-06 17.6 0.1 1 1 3.1e-07 1.2e-05 16.7 0.1 1 42 4 40 4 51 0.82 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_23 - 206 Virul_fac_BrkB PF03631.10 260 0.0092 6.9 25.0 1 2 2.3e-06 9e-05 13.5 8.3 163 234 8 78 1 80 0.84 # 16710 # 17327 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 1_23 - 206 Virul_fac_BrkB PF03631.10 260 0.0092 6.9 25.0 2 2 0.021 0.81 0.5 6.6 117 172 140 190 130 193 0.37 # 16710 # 17327 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 1_12 - 497 GIDA PF01134.17 392 5.7e-08 23.5 3.0 1 2 3e-09 5.9e-08 23.4 0.6 1 32 5 36 5 45 0.88 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_12 - 497 GIDA PF01134.17 392 5.7e-08 23.5 3.0 2 2 0.059 1.2 -0.6 0.1 114 145 245 277 227 280 0.76 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_9 - 502 GIDA PF01134.17 392 1.1e-05 16.0 0.2 1 1 1.1e-06 2.1e-05 15.1 0.2 1 34 2 34 2 44 0.85 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_39 - 104 HTH_Tnp_ISL3 PF13542.1 52 3.3e-07 21.0 0.0 1 1 1.2e-08 4.7e-07 20.6 0.0 23 51 28 56 23 57 0.89 # 29739 # 30050 # -1 # ID=1_39;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.266 1_37 - 62 FeoC PF09012.5 69 0.00019 12.8 0.1 1 1 7.1e-06 0.00028 12.2 0.1 4 33 4 32 2 33 0.91 # 29135 # 29320 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.258 1_12 - 497 TIGR01811 TIGR01811 603 2.2e-05 14.5 0.2 1 1 9e-07 3.5e-05 13.8 0.2 1 28 6 33 6 38 0.92 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_30 - 190 DUF742 PF05331.6 114 0.00014 13.1 0.0 1 1 7.9e-06 0.00031 12.0 0.0 39 73 127 162 104 166 0.85 # 23569 # 24138 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.277 1_6 - 227 AAA_15 PF13175.1 415 8.5e-10 29.7 7.6 1 2 9.8e-10 3.8e-08 24.3 3.6 12 78 21 96 8 126 0.87 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 AAA_15 PF13175.1 415 8.5e-10 29.7 7.6 2 2 0.00011 0.0043 7.6 0.2 333 412 133 202 110 205 0.75 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_5 - 370 Biotin_lipoyl_2 PF13533.1 50 2.6e-07 21.9 3.8 1 2 5e-06 0.00019 12.7 0.4 17 46 75 104 71 113 0.80 # 1799 # 2908 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_5 - 370 Biotin_lipoyl_2 PF13533.1 50 2.6e-07 21.9 3.8 2 2 8.8e-05 0.0034 8.7 0.2 15 39 164 188 154 207 0.84 # 1799 # 2908 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_34 - 140 Fe_dep_repress PF01325.14 60 0.00016 13.2 0.0 1 1 7.1e-06 0.00028 12.5 0.0 24 53 49 78 44 83 0.87 # 27244 # 27663 # 1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_17 - 76 TetR_N PF00440.18 47 7.9e-05 13.9 0.0 1 1 3.5e-06 0.00014 13.1 0.0 18 35 3 20 3 21 0.95 # 13408 # 13635 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.241 1_37 - 62 HTH_25 PF13413.1 62 1.6e-10 32.1 0.1 1 1 4.6e-12 1.8e-10 32.0 0.1 2 36 5 39 4 49 0.92 # 29135 # 29320 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.258 1_6 - 227 MobB PF03205.9 140 5.2e-05 14.6 0.0 1 1 3.2e-06 0.00013 13.3 0.0 3 20 34 51 32 84 0.89 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_35 - 203 HTH_38 PF13936.1 44 2e-06 18.9 1.4 1 1 4.2e-07 5.5e-06 17.5 0.1 15 39 170 194 159 195 0.92 # 27934 # 28542 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_37 - 62 HTH_38 PF13936.1 44 2.5e-05 15.4 0.6 1 1 2.5e-06 3.2e-05 15.1 0.6 11 39 3 32 2 33 0.87 # 29135 # 29320 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.258 1_17 - 76 HTH_38 PF13936.1 44 0.00026 12.2 0.0 1 1 3.4e-05 0.00044 11.4 0.0 21 39 2 20 2 24 0.93 # 13408 # 13635 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.241 1_30 - 190 Sigma70_r4 PF04545.11 50 1e-13 42.0 0.1 1 1 3e-14 2.9e-13 40.6 0.0 3 48 127 172 126 174 0.93 # 23569 # 24138 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.277 1_35 - 203 Sigma70_r4 PF04545.11 50 1.3e-05 16.1 0.2 1 1 3e-06 2.9e-05 14.9 0.2 9 42 160 197 157 198 0.94 # 27934 # 28542 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_37 - 62 Sigma70_r4 PF04545.11 50 1.5e-05 15.9 0.2 1 1 2.2e-06 2.1e-05 15.4 0.2 15 42 8 35 4 36 0.89 # 29135 # 29320 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.258 1_17 - 76 Sigma70_r4 PF04545.11 50 0.00017 12.5 0.0 1 1 3.4e-05 0.00033 11.6 0.0 21 37 2 18 1 26 0.87 # 13408 # 13635 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.241 1_34 - 140 HTH_27 PF13463.1 68 2.2e-10 32.4 0.0 1 1 7.7e-12 3e-10 31.9 0.0 1 67 31 96 31 97 0.90 # 27244 # 27663 # 1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_12 - 497 TIGR03140 TIGR03140 515 0.00013 11.8 1.1 1 2 1e-05 0.00039 10.2 0.2 213 250 4 43 1 52 0.63 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_12 - 497 TIGR03140 TIGR03140 515 0.00013 11.8 1.1 2 2 0.016 0.62 -0.3 0.0 268 316 227 277 220 280 0.84 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_5 - 370 HlyD_2 PF12700.2 328 1.5e-10 32.2 29.3 1 2 1.5e-10 5.8e-09 27.0 21.7 32 239 72 228 48 236 0.74 # 1799 # 2908 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_5 - 370 HlyD_2 PF12700.2 328 1.5e-10 32.2 29.3 2 2 3.3e-05 0.0013 9.5 0.8 274 327 302 352 259 353 0.73 # 1799 # 2908 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_23 - 206 Cad PF03596.8 191 2.1e-82 267.0 16.8 1 1 6.3e-84 2.5e-82 266.8 16.8 1 190 12 202 12 203 0.99 # 16710 # 17327 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 1_17 - 76 HTH_40 PF14493.1 91 9.9e-06 17.4 1.0 1 1 6e-07 1.2e-05 17.1 1.0 14 72 2 70 1 73 0.86 # 13408 # 13635 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.241 1_35 - 203 HTH_40 PF14493.1 91 5.5e-05 15.0 0.1 1 1 9.1e-06 0.00018 13.4 0.1 7 31 169 193 166 195 0.94 # 27934 # 28542 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_37 - 62 HTH_3 PF01381.17 55 9.9e-23 71.4 0.1 1 1 2.8e-24 1.1e-22 71.3 0.1 1 55 5 59 5 59 0.99 # 29135 # 29320 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.258 1_34 - 140 TrmB PF01978.14 68 3.2e-07 21.6 0.0 1 1 2.4e-08 9.2e-07 20.2 0.0 1 58 26 83 25 98 0.92 # 27244 # 27663 # 1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_39 - 104 HTH_psq PF05225.11 45 1.9e-05 15.8 0.1 1 1 1.1e-06 4.2e-05 14.7 0.1 12 38 30 54 28 63 0.88 # 29739 # 30050 # -1 # ID=1_39;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.266 1_9 - 502 NAD_binding_8 PF13450.1 68 8.8e-19 59.0 0.0 1 1 1.1e-19 2e-18 57.8 0.0 1 67 5 71 5 72 0.97 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_12 - 497 NAD_binding_8 PF13450.1 68 4.9e-16 50.2 0.0 1 1 6.9e-17 1.4e-15 48.8 0.0 1 66 8 70 8 72 0.91 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_28 - 492 CbiA PF01656.18 195 0.00053 11.0 2.0 1 1 6.3e-05 0.0025 8.8 2.0 8 34 120 146 115 226 0.78 # 21127 # 22602 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.297 1_9 - 502 F420_oxidored PF03807.12 96 0.00036 12.6 0.6 1 1 2.2e-05 0.00085 11.4 0.6 1 31 2 29 2 44 0.87 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_25 - 434 HTH_26 PF13443.1 63 1.8e-12 39.0 0.5 1 2 0.00039 0.0075 8.1 0.0 32 58 36 61 7 71 0.85 # 17858 # 19159 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.270 1_25 - 434 HTH_26 PF13443.1 63 1.8e-12 39.0 0.5 2 2 1.8e-10 3.6e-09 28.4 0.2 9 62 227 279 217 280 0.92 # 17858 # 19159 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.270 1_37 - 62 HTH_26 PF13443.1 63 3.1e-10 31.8 0.0 1 1 1.8e-11 3.5e-10 31.6 0.0 1 58 4 60 4 61 0.97 # 29135 # 29320 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.258 1_6 - 227 ABC_tran PF00005.22 137 8.1e-35 111.7 0.1 1 1 5.6e-36 1.1e-34 111.3 0.1 1 136 21 169 21 170 0.90 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_2 - 160 ABC_tran PF00005.22 137 2.8e-05 16.0 0.0 1 1 2e-06 3.9e-05 15.6 0.0 55 136 14 100 1 101 0.80 # 619 # 1098 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.277 1_6 - 227 SMC_N PF02463.14 220 5.5e-12 36.9 4.3 1 1 9.2e-13 3.6e-11 34.2 4.3 17 212 23 215 7 222 0.74 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_30 - 190 Trp_repressor PF01371.14 88 0.00015 13.3 0.2 1 1 8.3e-06 0.00032 12.2 0.2 40 87 135 183 114 184 0.91 # 23569 # 24138 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.277 1_6 - 227 AAA_29 PF13555.1 62 2.7e-07 21.7 0.1 1 1 1.5e-08 5.7e-07 20.7 0.1 17 40 26 48 19 53 0.82 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 AAA_28 PF13521.1 163 4.8e-05 14.9 0.0 1 1 2.8e-06 0.00011 13.8 0.0 2 24 34 58 33 76 0.89 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_18 - 324 RepA_N PF06970.6 76 6.5e-35 110.4 2.0 1 1 4.7e-36 1.8e-34 109.0 2.0 1 76 12 88 12 88 0.99 # 14127 # 15098 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_23 - 206 Sdh_cyt PF01127.17 121 0.00019 12.8 14.6 1 2 0.0002 0.0077 7.7 3.9 27 120 5 117 2 118 0.66 # 16710 # 17327 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 1_23 - 206 Sdh_cyt PF01127.17 121 0.00019 12.8 14.6 2 2 0.00025 0.0096 7.4 3.0 32 78 144 189 138 201 0.64 # 16710 # 17327 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 1_8 - 327 FAE1_CUT1_RppA PF08392.7 290 3.6e-07 21.0 0.0 1 1 1.5e-08 6e-07 20.3 0.0 79 178 49 147 10 175 0.83 # 4900 # 5880 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_5 - 370 Biotin_lipoyl PF00364.17 74 0.00041 11.6 4.9 1 3 0.00026 0.01 7.2 0.0 8 35 68 89 64 93 0.82 # 1799 # 2908 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_5 - 370 Biotin_lipoyl PF00364.17 74 0.00041 11.6 4.9 2 3 0.015 0.59 1.5 0.0 50 73 161 181 149 183 0.63 # 1799 # 2908 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_5 - 370 Biotin_lipoyl PF00364.17 74 0.00041 11.6 4.9 3 3 0.012 0.48 1.8 0.2 38 57 203 225 192 227 0.77 # 1799 # 2908 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_6 - 227 RNA_helicase PF00910.17 107 0.00018 13.3 0.8 1 2 3.6e-05 0.0014 10.4 0.2 1 18 34 51 34 121 0.88 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 RNA_helicase PF00910.17 107 0.00018 13.3 0.8 2 2 0.036 1.4 0.8 0.0 50 91 160 202 142 212 0.72 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/55791ec2-fef8-4cc3-95c0-bb8fabb192b9 # Target file: checkm_output/bins/pGCA_000706685.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000706685.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/55791ec2-fef8-4cc3-95c0-bb8fabb192b9 checkm_output/bins/pGCA_000706685.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:52:36 2021 # [ok]