# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 204 GerE PF00196.14 58 0.00016 12.3 0.1 1 1 1e-05 0.00031 11.4 0.1 11 35 168 192 166 197 0.93 # 5507 # 6118 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_9 - 140 MarR_2 PF12802.2 62 6.5e-14 42.7 0.0 1 1 2.7e-15 8.4e-14 42.4 0.0 1 61 29 87 29 88 0.95 # 6471 # 6890 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_9 - 140 HTH_Crp_2 PF13545.1 76 0.00018 12.6 0.0 1 1 9.9e-06 0.00031 11.8 0.0 32 67 51 91 42 99 0.82 # 6471 # 6890 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_8 - 204 HTH_22 PF13309.1 64 1.9e-07 22.1 0.9 1 3 0.027 0.85 0.8 0.0 23 38 71 86 62 95 0.84 # 5507 # 6118 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_8 - 204 HTH_22 PF13309.1 64 1.9e-07 22.1 0.9 2 3 0.0014 0.043 4.9 0.1 3 41 109 147 107 149 0.93 # 5507 # 6118 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_8 - 204 HTH_22 PF13309.1 64 1.9e-07 22.1 0.9 3 3 4.4e-06 0.00014 12.9 0.0 43 61 176 194 171 195 0.94 # 5507 # 6118 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_24 - 315 HTH_36 PF13730.1 55 5.6e-08 24.2 0.5 1 1 4.3e-09 1.3e-07 23.0 0.5 2 54 32 95 31 96 0.85 # 19631 # 20575 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.279 1_9 - 140 Penicillinase_R PF03965.11 115 0.00015 13.2 0.0 1 1 6.6e-06 0.00021 12.7 0.0 1 59 31 85 31 130 0.80 # 6471 # 6890 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_9 - 140 B-block_TFIIIC PF04182.7 75 1.8e-05 15.8 0.7 1 2 0.0075 0.23 2.7 0.1 29 48 12 31 3 47 0.83 # 6471 # 6890 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_9 - 140 B-block_TFIIIC PF04182.7 75 1.8e-05 15.8 0.7 2 2 1.1e-05 0.00033 11.8 0.1 25 54 54 83 47 113 0.82 # 6471 # 6890 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_10 - 324 ADH_N PF08240.7 109 1.5e-11 35.3 0.0 1 2 4.2e-11 1.3e-09 29.1 0.0 2 61 29 86 28 91 0.90 # 7014 # 7985 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_10 - 324 ADH_N PF08240.7 109 1.5e-11 35.3 0.0 2 2 0.0023 0.073 4.2 0.0 87 109 91 113 87 113 0.86 # 7014 # 7985 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 140 HTH_34 PF13601.1 80 0.00011 13.5 0.1 1 1 7.1e-06 0.00022 12.5 0.1 4 63 37 95 34 106 0.87 # 6471 # 6890 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_8 - 204 HTH_29 PF13551.1 112 9.4e-07 20.3 0.3 1 2 0.071 2.2 -0.2 0.0 21 55 116 150 104 164 0.66 # 5507 # 6118 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_8 - 204 HTH_29 PF13551.1 112 9.4e-07 20.3 0.3 2 2 2.5e-07 7.9e-06 17.3 0.0 4 34 168 197 166 199 0.91 # 5507 # 6118 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_9 - 140 MarR PF01047.17 59 5.4e-15 46.2 0.0 1 1 2.6e-16 8e-15 45.7 0.0 1 59 31 89 31 89 0.98 # 6471 # 6890 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_1 - 61 HTH_5 PF01022.15 47 3.7e-13 40.3 0.5 1 1 1.4e-14 4.4e-13 40.0 0.5 15 45 1 31 1 33 0.94 # 3 # 185 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.273 1_10 - 324 TIGR02817 TIGR02817 336 1.9e-18 57.8 0.0 1 1 9.2e-20 2.9e-18 57.3 0.0 26 215 25 218 9 231 0.85 # 7014 # 7985 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 140 HTH_24 PF13412.1 48 5.9e-05 13.8 0.0 1 1 3.4e-06 0.00011 12.9 0.0 8 48 38 78 32 78 0.89 # 6471 # 6890 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_8 - 204 HTH_7 PF02796.10 45 1.5e-23 73.7 1.3 1 1 6e-25 1.9e-23 73.4 0.2 1 44 147 198 147 199 0.95 # 5507 # 6118 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_9 - 140 DUF2250 PF10007.4 93 8.6e-05 13.7 0.0 1 1 4.4e-06 0.00014 13.1 0.0 7 58 32 83 26 113 0.89 # 6471 # 6890 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_3 - 163 Peptidase_M50 PF02163.17 192 0.034 4.3 11.1 1 1 0.0036 0.11 2.6 11.1 117 142 35 119 8 124 0.66 # 1900 # 2388 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.186 1_16 - 346 AAA_14 PF13173.1 128 0.0085 7.3 7.0 1 1 1.8e-05 0.00055 11.1 1.1 19 90 146 224 143 266 0.67 # 12472 # 13509 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.271 1_10 - 324 Epimerase PF01370.16 236 9.5e-05 13.1 0.1 1 1 4.1e-06 0.00013 12.7 0.1 1 39 152 191 152 247 0.82 # 7014 # 7985 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_10 - 324 NmrA PF05368.8 233 4.2e-06 17.4 0.6 1 1 3.2e-07 1e-05 16.1 0.6 1 52 152 205 152 264 0.90 # 7014 # 7985 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_8 - 204 HTH_23 PF13384.1 50 1.8e-09 28.4 0.4 1 1 1.2e-10 3.8e-09 27.3 0.1 4 39 162 197 159 201 0.89 # 5507 # 6118 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_23 - 257 TIGR02168 TIGR02168 1181 1.2e-07 20.7 33.5 1 1 4.5e-09 1.4e-07 20.5 33.5 253 434 48 230 20 247 0.83 # 18417 # 19187 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.266 1_10 - 324 DapB_N PF01113.15 124 3.2e-06 18.3 0.2 1 2 0.042 1.3 0.2 0.0 92 103 121 132 115 142 0.84 # 7014 # 7985 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_10 - 324 DapB_N PF01113.15 124 3.2e-06 18.3 0.2 2 2 1.1e-06 3.4e-05 15.1 0.2 3 97 152 242 150 250 0.78 # 7014 # 7985 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_8 - 204 HTH_11 PF08279.7 55 9.4e-05 13.4 0.1 1 1 2e-05 0.00031 11.7 0.1 18 34 178 194 166 195 0.80 # 5507 # 6118 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_23 - 257 HTH_11 PF08279.7 55 0.00014 12.8 0.0 1 1 3.6e-05 0.00056 10.9 0.0 21 40 7 26 3 30 0.87 # 18417 # 19187 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.266 1_8 - 204 HTH_28 PF13518.1 52 1.4e-08 25.9 0.1 1 1 1.3e-09 4.1e-08 24.5 0.1 4 34 167 197 166 198 0.94 # 5507 # 6118 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_23 - 257 HlyD PF00529.15 305 0.0031 8.0 14.0 1 1 0.00014 0.0044 7.5 14.0 43 137 106 202 94 228 0.78 # 18417 # 19187 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.266 1_10 - 324 ADH_zinc_N PF00107.21 130 1.5e-17 54.6 0.0 1 1 1.1e-18 3.4e-17 53.5 0.0 1 114 160 267 160 285 0.91 # 7014 # 7985 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_10 - 324 NAD_binding_10 PF13460.1 183 6.1e-06 17.6 0.1 1 1 2.8e-07 8.8e-06 17.1 0.1 1 38 152 192 152 222 0.86 # 7014 # 7985 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_8 - 204 CENP-B_N PF04218.8 53 1.5e-08 25.2 2.8 1 2 0.00037 0.011 6.5 0.2 13 35 117 139 115 142 0.85 # 5507 # 6118 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_8 - 204 CENP-B_N PF04218.8 53 1.5e-08 25.2 2.8 2 2 5e-08 1.5e-06 18.8 0.2 14 46 167 199 166 200 0.92 # 5507 # 6118 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_9 - 140 Fe_dep_repress PF01325.14 60 0.00013 13.2 0.0 1 1 7.1e-06 0.00022 12.5 0.0 24 53 49 78 44 83 0.87 # 6471 # 6890 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_8 - 204 HTH_38 PF13936.1 44 8.8e-06 16.6 2.1 1 2 0.081 2.5 -0.9 0.2 6 20 121 135 114 140 0.57 # 5507 # 6118 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_8 - 204 HTH_38 PF13936.1 44 8.8e-06 16.6 2.1 2 2 4.2e-07 1.3e-05 16.0 0.2 15 39 170 194 160 195 0.93 # 5507 # 6118 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_8 - 204 Sigma70_r4 PF04545.11 50 5.7e-05 13.7 0.1 1 1 4.2e-06 0.00013 12.6 0.1 9 41 160 196 157 198 0.92 # 5507 # 6118 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_9 - 140 HTH_27 PF13463.1 68 1.8e-10 32.4 0.0 1 1 7.7e-12 2.4e-10 31.9 0.0 1 67 31 96 31 97 0.90 # 6471 # 6890 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_8 - 204 HTH_Tnp_IS630 PF01710.11 120 4.1e-05 14.5 0.1 1 1 3.6e-06 0.00011 13.1 0.1 9 41 166 198 162 203 0.88 # 5507 # 6118 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_28 - 61 Cad PF03596.8 191 7.2e-18 56.2 1.0 1 1 5.6e-19 8.7e-18 55.9 1.0 1 45 16 60 16 60 0.98 # 22180 # 22362 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.273 1_29 - 50 Cad PF03596.8 191 7.1e-09 26.8 0.0 1 1 4.9e-10 7.5e-09 26.8 0.0 74 117 2 45 1 48 0.93 # 22440 # 22589 # 1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_8 - 204 HTH_40 PF14493.1 91 1e-05 17.0 0.9 1 2 0.015 0.47 2.1 0.1 24 57 94 127 72 147 0.76 # 5507 # 6118 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_8 - 204 HTH_40 PF14493.1 91 1e-05 17.0 0.9 2 2 5.7e-06 0.00018 13.1 0.1 7 31 169 193 165 194 0.92 # 5507 # 6118 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_8 - 204 HTH_3 PF01381.17 55 0.00024 12.3 0.6 1 1 1.4e-05 0.00043 11.4 0.1 13 33 179 199 171 201 0.88 # 5507 # 6118 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_9 - 140 TrmB PF01978.14 68 2.5e-07 21.6 0.0 1 1 2.4e-08 7.3e-07 20.2 0.0 1 58 26 83 25 98 0.92 # 6471 # 6890 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.264 1_18 - 100 zf-DHHC PF01529.15 174 0.016 5.8 8.3 1 1 0.00065 0.02 5.5 8.3 101 167 13 79 4 96 0.69 # 15948 # 16247 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.237 1_24 - 315 RepA_N PF06970.6 76 1.8e-35 111.9 4.9 1 1 1.8e-36 5.5e-35 110.4 4.9 1 76 15 90 15 90 0.99 # 19631 # 20575 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.279 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/8374b63f-a6d7-4038-a35f-933a04afb089 # Target file: checkm_output/bins/pGCA_000597965.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000597965.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8374b63f-a6d7-4038-a35f-933a04afb089 checkm_output/bins/pGCA_000597965.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:52:32 2021 # [ok]