# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_1 - 159 RepL PF05732.6 165 3.7e-73 233.3 4.8 1 1 6.2e-74 4.4e-73 233.1 4.8 1 148 1 148 1 156 0.98 # 727 # 1203 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 2_2 - 245 Methyltransf_11 PF08241.7 95 4e-07 19.7 0.0 1 1 1.1e-07 7.7e-07 18.8 0.0 2 60 36 94 35 99 0.91 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_1 - 159 HTH_Crp_2 PF13545.1 76 1.5e-07 20.4 0.2 1 1 3.4e-08 2.4e-07 19.7 0.2 30 67 78 115 60 122 0.88 # 727 # 1203 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 2_2 - 245 Methyltransf_4 PF02390.12 197 1.2e-06 16.8 0.3 1 2 1.7e-07 1.2e-06 16.8 0.3 20 97 31 101 4 104 0.77 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_2 - 245 Methyltransf_4 PF02390.12 197 1.2e-06 16.8 0.3 2 2 0.093 0.65 -1.9 0.1 136 159 187 207 168 229 0.62 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_2 - 245 Methyltransf_31 PF13847.1 152 1.2e-06 17.3 2.8 1 1 2.9e-07 2.1e-06 16.6 2.6 2 76 29 98 28 225 0.74 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_1 - 159 FUR PF01475.14 120 1.8e-06 17.0 0.1 1 2 0.0067 0.047 2.8 0.0 78 102 12 36 2 50 0.71 # 727 # 1203 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 2_1 - 159 FUR PF01475.14 120 1.8e-06 17.0 0.1 2 2 9e-06 6.3e-05 12.1 0.1 12 60 59 108 53 111 0.76 # 727 # 1203 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_4 - 332 Ribosomal_L11 PF00298.14 69 4e-05 13.0 1.7 1 2 2e-05 0.00014 11.2 0.1 16 43 23 51 16 63 0.90 # 2036 # 3031 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.294 1_4 - 332 Ribosomal_L11 PF00298.14 69 4e-05 13.0 1.7 2 2 0.078 0.55 -0.3 0.1 30 57 211 238 206 239 0.77 # 2036 # 3031 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.294 2_1 - 159 HTH_36 PF13730.1 55 3.7e-05 13.0 0.0 1 1 1e-05 7e-05 12.2 0.0 26 54 77 105 61 106 0.84 # 727 # 1203 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 2_2 - 245 RrnaAD PF00398.15 262 2.9e-76 245.0 4.4 1 1 4.6e-77 3.2e-76 244.9 4.4 1 262 1 244 1 244 0.97 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_2 - 245 MTS PF05175.9 170 2.2e-06 16.3 0.0 1 1 4.8e-07 3.4e-06 15.7 0.0 25 113 24 109 14 125 0.83 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_2 - 245 DOT1 PF08123.8 205 2.2e-06 16.2 1.3 1 2 1.9e-06 1.3e-05 13.7 0.0 29 91 17 77 13 116 0.83 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_2 - 245 DOT1 PF08123.8 205 2.2e-06 16.2 1.3 2 2 0.016 0.11 0.9 0.6 78 133 180 229 169 236 0.57 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_3 - 116 HTH_34 PF13601.1 80 2.5e-05 13.5 0.2 1 1 5.4e-06 3.8e-05 12.9 0.2 2 49 44 91 43 96 0.93 # 1498 # 1845 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.256 2_1 - 159 MarR PF01047.17 59 1.1e-05 14.3 0.3 1 1 2.7e-06 1.9e-05 13.6 0.3 19 50 78 109 64 111 0.86 # 727 # 1203 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 2_2 - 245 Methyltransf_12 PF08242.7 99 5e-05 13.0 0.2 1 1 1.9e-05 0.00014 11.6 0.0 2 56 36 88 35 114 0.83 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_3 - 116 HTH_20 PF12840.2 61 4.3e-06 15.7 0.0 1 1 1.5e-06 5.4e-06 15.4 0.0 15 57 48 89 34 93 0.87 # 1498 # 1845 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.256 2_1 - 159 HTH_20 PF12840.2 61 5.2e-06 15.5 0.0 1 1 2.4e-06 8.3e-06 14.8 0.0 25 56 77 108 65 111 0.93 # 727 # 1203 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_3 - 116 HTH_5 PF01022.15 47 2.7e-18 54.6 1.6 1 1 6.8e-19 4.7e-18 53.9 1.6 1 45 41 86 41 88 0.95 # 1498 # 1845 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.256 2_1 - 159 HTH_24 PF13412.1 48 2.2e-08 22.7 1.5 1 2 0.0059 0.041 2.6 0.0 5 21 57 73 55 77 0.89 # 727 # 1203 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 2_1 - 159 HTH_24 PF13412.1 48 2.2e-08 22.7 1.5 2 2 4.1e-08 2.9e-07 19.1 0.4 18 48 77 107 76 107 0.96 # 727 # 1203 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 2_1 - 159 HTH_23 PF13384.1 50 4.6e-05 12.3 0.0 1 1 1.3e-05 9.1e-05 11.4 0.0 19 45 78 103 68 108 0.88 # 727 # 1203 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 2_1 - 159 HTH_11 PF08279.7 55 2.5e-05 13.1 0.2 1 1 6.7e-06 4.7e-05 12.2 0.2 16 43 77 104 61 112 0.82 # 727 # 1203 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 2_1 - 159 HTH_28 PF13518.1 52 6.5e-06 15.4 0.0 1 1 2.5e-06 1.8e-05 14.0 0.0 1 41 56 105 56 111 0.82 # 727 # 1203 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 2_2 - 245 Methyltransf_26 PF13659.1 117 1.1e-09 27.6 0.0 1 1 2e-10 1.4e-09 27.2 0.0 2 81 32 105 31 148 0.90 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_2 - 245 PCMT PF01135.14 210 2.5e-07 19.5 0.0 1 1 1e-07 7.3e-07 18.0 0.0 53 126 10 80 3 86 0.86 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_1 - 159 GntR PF00392.16 64 1.8e-05 13.4 0.0 1 1 5.4e-06 3.7e-05 12.4 0.0 17 59 69 111 57 112 0.87 # 727 # 1203 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_2 - 206 Virul_fac_BrkB PF03631.10 260 0.00031 9.2 23.5 1 2 7.7e-06 5.4e-05 11.7 7.6 166 235 11 79 1 81 0.84 # 862 # 1479 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_2 - 206 Virul_fac_BrkB PF03631.10 260 0.00031 9.2 23.5 2 2 0.0021 0.015 3.7 8.0 115 180 135 191 107 193 0.63 # 862 # 1479 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 2_2 - 245 Methyltransf_23 PF13489.1 161 3.6e-06 15.9 0.0 1 1 1.5e-06 1e-05 14.5 0.0 11 67 17 78 8 119 0.71 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_2 - 206 Cad PF03596.8 191 4.1e-86 276.7 16.4 1 1 6.7e-87 4.7e-86 276.5 16.4 1 191 12 203 12 203 0.99 # 862 # 1479 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 2_1 - 159 FaeA PF04703.7 62 4.5e-05 12.8 0.1 1 1 1.1e-05 7.4e-05 12.1 0.1 13 47 74 108 56 112 0.77 # 727 # 1203 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 2_2 - 245 Methyltransf_18 PF12847.2 112 1.5e-08 24.4 0.0 1 1 3e-09 2.1e-08 23.9 0.0 3 66 32 91 30 151 0.76 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_2 - 245 Methyltransf_25 PF13649.1 101 4.8e-05 12.9 0.0 1 1 1.5e-05 0.0001 11.9 0.0 1 69 34 96 34 121 0.83 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_2 - 206 Sdh_cyt PF01127.17 121 0.00019 10.4 15.6 1 2 0.00031 0.0022 7.0 1.9 35 120 13 117 2 118 0.59 # 862 # 1479 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_2 - 206 Sdh_cyt PF01127.17 121 0.00019 10.4 15.6 2 2 0.001 0.007 5.4 6.2 33 78 144 189 129 192 0.52 # 862 # 1479 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 2_2 - 245 NodS PF05401.6 201 2.1e-06 16.4 0.0 1 1 4.8e-07 3.4e-06 15.7 0.0 44 107 31 94 9 115 0.84 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_2 - 245 TIGR00755 TIGR00755 256 1.6e-48 154.0 1.2 1 1 2.9e-49 2.1e-48 153.6 1.2 6 254 7 237 3 239 0.88 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/dc52dfd6-c15b-4121-8b2d-c6d62cc98902 # Target file: checkm_output/bins/pGCA_000463055.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000463055.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/dc52dfd6-c15b-4121-8b2d-c6d62cc98902 checkm_output/bins/pGCA_000463055.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:52:24 2021 # [ok]