# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_20 - 203 GerE PF00196.14 58 9.4e-05 12.9 0.1 1 1 6.6e-06 0.00018 11.9 0.1 11 35 168 192 166 196 0.94 # 15097 # 15705 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_23 - 554 Peptidase_M56 PF05569.6 299 8.8e-89 288.4 12.1 1 1 6.9e-90 1.9e-88 287.3 12.1 32 299 2 266 1 266 0.99 # 17043 # 18704 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.265 1_21 - 193 MarR_2 PF12802.2 62 9.7e-06 16.4 0.0 1 2 0.0094 0.13 3.2 0.1 23 45 112 134 78 137 0.90 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_21 - 193 MarR_2 PF12802.2 62 9.7e-06 16.4 0.0 2 2 3.4e-05 0.00048 11.0 0.0 7 45 149 184 144 187 0.90 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_25 - 123 MarR_2 PF12802.2 62 5.6e-05 13.9 0.0 1 1 1.6e-05 0.00023 12.0 0.0 22 55 57 90 32 93 0.81 # 20315 # 20683 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_25 - 123 HTH_Crp_2 PF13545.1 76 4.7e-06 17.5 0.1 1 2 0.016 0.45 1.6 0.0 42 59 29 46 11 62 0.70 # 20315 # 20683 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_25 - 123 HTH_Crp_2 PF13545.1 76 4.7e-06 17.5 0.1 2 2 8e-07 2.2e-05 15.4 0.1 32 62 60 90 32 97 0.83 # 20315 # 20683 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_18 - 62 HTH_19 PF12844.2 64 1.1e-20 64.6 0.3 1 1 4.5e-22 1.3e-20 64.4 0.3 2 59 3 60 3 61 0.98 # 14323 # 14508 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.247 1_21 - 193 Sigma70_r4_2 PF08281.7 54 0.0001 12.9 0.0 1 1 6.1e-06 0.00017 12.2 0.0 10 49 144 183 143 184 0.88 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_21 - 193 Mga PF05043.8 87 1.8e-07 22.6 0.5 1 2 0.007 0.2 3.2 0.1 24 52 104 132 74 137 0.83 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_21 - 193 Mga PF05043.8 87 1.8e-07 22.6 0.5 2 2 2.8e-07 7.7e-06 17.3 0.0 16 56 147 186 143 187 0.94 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_21 - 193 HTH_30 PF13556.1 59 0.00018 12.2 0.1 1 1 1.3e-05 0.00036 11.3 0.1 3 37 151 185 150 190 0.93 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_21 - 193 Mor PF08765.6 108 0.00021 12.2 0.1 1 1 1.5e-05 0.00041 11.3 0.1 71 102 159 190 121 192 0.83 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_18 - 62 HTH_31 PF13560.1 64 8e-13 39.6 0.0 1 1 3.3e-14 9.3e-13 39.4 0.0 5 60 4 58 3 60 0.97 # 14323 # 14508 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.247 1_21 - 193 HTH_22 PF13309.1 64 3e-08 24.5 0.4 1 2 0.084 1.2 0.2 0.0 23 38 70 85 64 85 0.85 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_21 - 193 HTH_22 PF13309.1 64 3e-08 24.5 0.4 2 2 4.8e-08 6.7e-07 20.2 0.1 12 64 136 182 128 182 0.82 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_20 - 203 HTH_22 PF13309.1 64 9.4e-08 22.9 1.3 1 3 0.054 0.76 0.8 0.0 23 38 71 86 62 95 0.84 # 15097 # 15705 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_20 - 203 HTH_22 PF13309.1 64 9.4e-08 22.9 1.3 2 3 0.0018 0.025 5.6 0.2 3 41 109 147 107 149 0.93 # 15097 # 15705 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_20 - 203 HTH_22 PF13309.1 64 9.4e-08 22.9 1.3 3 3 5.5e-06 7.7e-05 13.6 0.0 43 61 176 194 171 195 0.94 # 15097 # 15705 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_18 - 62 HTH_37 PF13744.1 80 7.1e-06 17.0 0.1 1 1 2.6e-07 7.4e-06 16.9 0.1 22 56 4 38 1 56 0.91 # 14323 # 14508 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.247 1_27 - 153 MULE PF10551.4 93 4.3e-05 14.8 0.0 1 1 4.7e-06 6.6e-05 14.2 0.0 19 77 20 75 5 90 0.83 # 23094 # 23552 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.349 1_3 - 225 MULE PF10551.4 93 7.3e-05 14.1 0.1 1 1 1.4e-05 0.0002 12.7 0.0 19 78 92 148 77 165 0.82 # 3090 # 3764 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.326 1_18 - 62 NUMOD1 PF07453.8 37 7.2e-05 13.8 0.1 1 1 3.9e-06 0.00011 13.2 0.1 17 35 14 32 3 33 0.88 # 14323 # 14508 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.247 1_28 - 70 HEM4 PF02602.10 231 2.3e-05 14.8 0.1 1 1 8.4e-07 2.4e-05 14.8 0.1 126 156 13 42 5 59 0.76 # 23522 # 23731 # -1 # ID=1_28;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.352 1_12 - 315 HTH_36 PF13730.1 55 5.1e-08 24.2 0.5 1 1 8.6e-09 1.2e-07 23.0 0.5 2 54 32 95 31 96 0.85 # 8663 # 9607 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.277 1_21 - 193 HTH_36 PF13730.1 55 0.00018 12.8 0.1 1 1 2.5e-05 0.00035 11.9 0.1 28 49 163 184 145 186 0.93 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_14 - 41 DDE_Tnp_1_7 PF13843.1 351 0.00017 11.8 0.0 1 1 6e-06 0.00017 11.8 0.0 103 128 5 30 1 39 0.87 # 10939 # 11061 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_26 - 728 Hydrolase PF00702.21 215 3.4e-47 152.7 0.5 1 1 2.3e-48 6.5e-47 151.8 0.5 1 213 409 630 409 632 0.91 # 20676 # 22859 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.385 1_22 - 127 Penicillinase_R PF03965.11 115 3.1e-37 118.3 1.0 1 1 1.3e-38 3.5e-37 118.2 1.0 1 114 8 121 8 122 0.99 # 16673 # 17053 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.255 1_3 - 225 AAA_17 PF13207.1 121 0.00017 13.6 0.7 1 1 9.5e-06 0.00027 12.9 0.7 23 112 24 121 19 180 0.80 # 3090 # 3764 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.326 1_25 - 123 HTH_34 PF13601.1 80 1.4e-07 22.6 0.0 1 1 1.8e-08 2.5e-07 21.8 0.0 2 49 44 91 43 95 0.93 # 20315 # 20683 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 116 HTH_34 PF13601.1 80 8.1e-05 13.8 0.1 1 1 8.2e-06 0.00011 13.3 0.1 2 49 44 91 43 107 0.93 # 6061 # 6408 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.259 1_21 - 193 HTH_29 PF13551.1 112 9.2e-07 20.2 0.6 1 2 0.018 0.25 2.7 0.2 32 69 121 156 118 159 0.73 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_21 - 193 HTH_29 PF13551.1 112 9.2e-07 20.2 0.6 2 2 1.1e-06 1.6e-05 16.2 0.0 7 39 156 187 151 190 0.91 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_20 - 203 HTH_29 PF13551.1 112 1.8e-06 19.2 0.2 1 1 7e-07 9.8e-06 16.9 0.0 4 34 168 197 166 199 0.91 # 15097 # 15705 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_22 - 127 MarR PF01047.17 59 3.1e-08 24.4 0.1 1 1 5.8e-09 5.4e-08 23.7 0.1 1 54 8 65 8 65 0.96 # 16673 # 17053 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.255 1_25 - 123 MarR PF01047.17 59 1.3e-06 19.2 0.0 1 1 2.6e-07 2.4e-06 18.4 0.0 14 51 53 90 34 91 0.88 # 20315 # 20683 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_21 - 193 MarR PF01047.17 59 0.00016 12.6 0.1 1 1 4.4e-05 0.00041 11.2 0.0 1 41 145 184 145 188 0.89 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_25 - 123 HTH_20 PF12840.2 61 1.5e-15 48.0 0.0 1 1 1.4e-16 2e-15 47.5 0.0 2 61 34 93 33 93 0.98 # 20315 # 20683 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 116 HTH_20 PF12840.2 61 1.7e-05 15.7 0.0 1 1 1.5e-06 2.2e-05 15.4 0.0 15 57 48 89 34 93 0.87 # 6061 # 6408 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.259 1_21 - 193 RuvB_C PF05491.8 76 0.0002 12.2 0.4 1 2 0.038 1.1 0.2 0.1 55 67 121 133 117 139 0.82 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_21 - 193 RuvB_C PF05491.8 76 0.0002 12.2 0.4 2 2 8.6e-05 0.0024 8.7 0.0 6 43 145 178 142 182 0.86 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_25 - 123 HTH_5 PF01022.15 47 7.4e-20 61.6 0.0 1 1 1.5e-20 2.1e-19 60.1 0.0 1 46 41 87 41 88 0.97 # 20315 # 20683 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_6 - 116 HTH_5 PF01022.15 47 1.1e-17 54.6 1.6 1 1 1.4e-18 1.9e-17 53.9 1.6 1 45 41 86 41 88 0.95 # 6061 # 6408 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.259 1_21 - 193 Terminase_5 PF06056.7 58 9.1e-05 13.2 0.1 1 1 6.2e-06 0.00017 12.3 0.1 7 36 154 183 153 189 0.92 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_21 - 193 HTH_24 PF13412.1 48 1.6e-10 31.4 0.3 1 1 3.1e-11 2.9e-10 30.6 0.3 1 41 145 184 145 188 0.96 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_18 - 62 HTH_24 PF13412.1 48 3.8e-05 14.2 0.1 1 1 5.6e-06 5.2e-05 13.8 0.1 13 36 9 32 5 33 0.88 # 14323 # 14508 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.247 1_25 - 123 HTH_24 PF13412.1 48 4.9e-05 13.9 0.0 1 1 1.2e-05 0.00011 12.7 0.0 2 47 41 86 40 87 0.93 # 20315 # 20683 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_21 - 193 HTH_AsnC-type PF13404.1 42 5e-05 14.0 0.0 1 1 3.8e-06 0.00011 12.9 0.0 3 41 147 184 145 185 0.90 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_27 - 153 DDE_Tnp_IS240 PF13610.1 140 4.4e-43 137.7 1.8 1 1 3.6e-44 5.1e-43 137.5 1.8 5 139 2 131 1 132 0.95 # 23094 # 23552 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.349 1_3 - 225 DDE_Tnp_IS240 PF13610.1 140 9.2e-43 136.7 1.6 1 1 9.4e-44 1.3e-42 136.2 1.6 3 139 72 203 70 204 0.95 # 3090 # 3764 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.326 1_25 - 123 HTH_IclR PF09339.5 52 2.6e-05 14.9 0.0 1 1 4.1e-06 5.7e-05 13.8 0.0 7 48 34 86 30 89 0.93 # 20315 # 20683 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_21 - 193 HTH_IclR PF09339.5 52 7.1e-05 13.5 0.0 1 1 1.3e-05 0.00018 12.2 0.0 7 43 151 185 150 188 0.85 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_20 - 203 HTH_7 PF02796.10 45 6.1e-23 71.6 1.5 1 1 7.9e-24 7.4e-23 71.4 0.3 1 44 147 198 147 199 0.95 # 15097 # 15705 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_21 - 193 HTH_7 PF02796.10 45 6.4e-20 62.0 0.2 1 1 1.5e-20 1.4e-19 60.9 0.2 1 43 140 182 140 184 0.98 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_18 - 62 HTH_7 PF02796.10 45 5.4e-05 14.2 0.1 1 1 1.8e-05 0.00017 12.6 0.2 18 38 9 30 2 31 0.79 # 14323 # 14508 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.247 1_21 - 193 HTH_DeoR PF08220.7 57 8.4e-05 13.3 0.0 1 1 6.8e-06 0.00019 12.1 0.0 16 41 162 187 149 189 0.83 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_21 - 193 Phage_antitermQ PF06530.7 126 0.00016 12.4 0.0 1 2 0.011 0.32 1.7 0.0 48 95 55 101 23 113 0.73 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_21 - 193 Phage_antitermQ PF06530.7 126 0.00016 12.4 0.0 2 2 9.1e-05 0.0025 8.5 0.0 62 101 144 183 141 189 0.90 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_2 - 163 Peptidase_M50 PF02163.17 192 0.03 4.3 11.1 1 1 0.0036 0.1 2.6 11.1 117 142 35 119 8 124 0.66 # 1506 # 1994 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.188 1_20 - 203 HTH_23 PF13384.1 50 8.3e-10 29.3 0.5 1 1 2.3e-10 1.6e-09 28.4 0.1 4 40 162 198 159 202 0.88 # 15097 # 15705 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_21 - 193 HTH_23 PF13384.1 50 9.7e-09 25.9 0.0 1 1 3.1e-09 2.2e-08 24.8 0.0 13 42 156 185 150 190 0.86 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_28 - 70 HTH_23 PF13384.1 50 3.6e-06 17.7 3.9 1 2 0.041 0.29 2.1 0.0 18 27 14 23 5 24 0.80 # 23522 # 23731 # -1 # ID=1_28;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.352 1_28 - 70 HTH_23 PF13384.1 50 3.6e-06 17.7 3.9 2 2 2.8e-06 2e-05 15.4 1.4 28 41 29 42 28 58 0.93 # 23522 # 23731 # -1 # ID=1_28;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.352 1_18 - 62 HTH_23 PF13384.1 50 7.2e-06 16.8 0.0 1 1 1.5e-06 1e-05 16.3 0.0 13 35 7 31 4 39 0.83 # 14323 # 14508 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.247 1_25 - 123 TFIIE_alpha PF02002.12 105 0.00012 12.7 0.0 1 1 9e-06 0.00025 11.7 0.0 4 62 33 91 30 93 0.95 # 20315 # 20683 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_14 - 41 Hydrolase_3 PF08282.7 254 2.4e-08 24.9 0.0 1 1 1.8e-09 2.6e-08 24.8 0.0 182 211 2 31 1 32 0.92 # 10939 # 11061 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_26 - 728 Hydrolase_3 PF08282.7 254 1.6e-06 19.0 3.6 1 1 1.4e-07 2e-06 18.6 1.0 194 239 604 650 602 654 0.85 # 20676 # 22859 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.385 1_21 - 193 UPF0122 PF04297.9 101 5.5e-05 14.3 0.1 1 1 5.8e-06 0.00016 12.8 0.0 19 59 146 186 142 190 0.86 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_22 - 127 S-AdoMet_synt_M PF02772.11 120 0.0002 12.5 1.9 1 2 1.6e-05 0.00046 11.3 0.9 65 106 22 62 3 74 0.77 # 16673 # 17053 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.255 1_22 - 127 S-AdoMet_synt_M PF02772.11 120 0.0002 12.5 1.9 2 2 0.043 1.2 0.3 0.0 63 90 88 115 69 126 0.62 # 16673 # 17053 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.255 1_13 - 257 TIGR02168 TIGR02168 1181 6.8e-08 21.4 32.3 1 1 2.8e-09 7.9e-08 21.1 32.3 253 436 48 232 21 247 0.83 # 10051 # 10821 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.268 1_21 - 193 HTH_11 PF08279.7 55 3.8e-09 27.3 0.1 1 1 1.3e-09 9.3e-09 26.0 0.1 4 41 151 186 147 189 0.81 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_18 - 62 HTH_11 PF08279.7 55 2.1e-07 21.7 0.2 1 1 4.6e-08 3.3e-07 21.1 0.2 10 32 9 30 2 32 0.81 # 14323 # 14508 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.247 1_20 - 203 HTH_11 PF08279.7 55 6.4e-05 13.8 0.1 1 1 3.4e-05 0.00024 11.9 0.1 18 34 178 194 166 195 0.77 # 15097 # 15705 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_13 - 257 HTH_11 PF08279.7 55 0.00012 12.8 0.0 1 1 7.3e-05 0.00051 10.9 0.0 21 40 7 26 3 30 0.87 # 10051 # 10821 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.268 1_28 - 70 Arg_repressor PF01316.16 70 8.4e-06 16.5 0.0 1 1 3.7e-07 1e-05 16.2 0.0 24 63 18 62 12 69 0.72 # 23522 # 23731 # -1 # ID=1_28;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.352 1_20 - 203 HTH_28 PF13518.1 52 5.2e-09 27.2 0.1 1 1 2e-09 1.4e-08 25.8 0.1 4 34 167 197 166 198 0.94 # 15097 # 15705 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_28 - 70 HTH_28 PF13518.1 52 6e-06 17.4 0.5 1 1 2.2e-06 1.5e-05 16.1 0.5 15 36 19 42 5 43 0.80 # 23522 # 23731 # -1 # ID=1_28;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.352 1_21 - 193 HTH_28 PF13518.1 52 6.2e-06 17.3 0.0 1 1 2.1e-06 1.5e-05 16.1 0.0 8 38 156 186 152 189 0.93 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_3 - 225 HTH_28 PF13518.1 52 0.00041 11.5 2.8 1 1 8.5e-05 0.00059 11.0 0.9 14 36 30 54 17 55 0.84 # 3090 # 3764 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.326 1_26 - 728 HAD PF12710.2 192 1.2e-16 52.6 0.0 1 1 9e-18 2.5e-16 51.5 0.0 1 191 412 628 412 629 0.59 # 20676 # 22859 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.385 1_13 - 257 HlyD PF00529.15 305 0.0021 8.5 13.6 1 1 0.0001 0.0028 8.0 13.6 43 139 106 204 94 231 0.78 # 10051 # 10821 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.268 1_28 - 70 HTH_Tnp_4 PF13613.1 53 4.3e-06 17.4 0.5 1 1 8.4e-07 2.3e-05 15.0 0.5 30 49 29 48 5 51 0.80 # 23522 # 23731 # -1 # ID=1_28;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.352 1_20 - 203 CENP-B_N PF04218.8 53 3.6e-08 23.9 3.3 1 2 0.00037 0.01 6.4 0.3 13 35 117 139 115 142 0.85 # 15097 # 15705 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_20 - 203 CENP-B_N PF04218.8 53 3.6e-08 23.9 3.3 2 2 9.3e-08 2.6e-06 18.0 0.2 14 46 167 199 166 200 0.91 # 15097 # 15705 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_8 - 100 Virul_fac_BrkB PF03631.10 260 3e-05 14.6 10.1 1 1 1.1e-06 3.1e-05 14.5 10.1 163 236 8 80 1 90 0.85 # 6744 # 7043 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.260 1_18 - 62 FeoC PF09012.5 69 0.0001 13.2 0.1 1 1 5.5e-06 0.00016 12.6 0.1 4 33 4 32 2 33 0.91 # 14323 # 14508 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.247 1_17 - 189 TetR_N PF00440.18 47 6.6e-19 58.5 0.1 1 1 7.6e-20 1.1e-18 57.9 0.1 1 47 7 53 7 53 0.98 # 13624 # 14190 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.243 1_21 - 193 TetR_N PF00440.18 47 0.00012 12.9 0.1 1 1 3.4e-05 0.00048 11.0 0.0 16 36 160 180 158 180 0.92 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_27 - 153 rve PF00665.21 120 4.7e-16 50.1 0.1 1 1 4.5e-17 6.3e-16 49.7 0.1 11 117 3 102 1 104 0.93 # 23094 # 23552 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.349 1_3 - 225 rve PF00665.21 120 5.1e-15 46.8 0.6 1 1 8.3e-16 1.2e-14 45.6 0.3 4 117 68 174 65 176 0.87 # 3090 # 3764 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.326 1_21 - 193 HTH_Mga PF08280.6 59 0.00023 12.1 1.2 1 1 2.1e-05 0.00058 10.8 0.3 2 44 144 185 143 187 0.91 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_18 - 62 HTH_25 PF13413.1 62 1.2e-10 32.1 0.1 1 1 5e-12 1.4e-10 31.9 0.1 2 36 5 39 4 46 0.94 # 14323 # 14508 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.247 1_21 - 193 HTH_38 PF13936.1 44 4.8e-07 20.5 0.0 1 1 1.2e-07 1.1e-06 19.3 0.0 13 43 153 183 143 184 0.87 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_20 - 203 HTH_38 PF13936.1 44 2.6e-06 18.1 2.1 1 1 4.7e-07 4.4e-06 17.4 0.1 15 39 170 194 160 195 0.93 # 15097 # 15705 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_18 - 62 HTH_38 PF13936.1 44 3.2e-05 14.6 0.6 1 1 4.9e-06 4.6e-05 14.1 0.6 11 39 3 32 2 33 0.87 # 14323 # 14508 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.247 1_20 - 203 Sigma70_r4 PF04545.11 50 1.6e-05 15.4 0.1 1 1 2.6e-06 3.6e-05 14.2 0.1 9 42 160 197 157 198 0.94 # 15097 # 15705 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_18 - 62 Sigma70_r4 PF04545.11 50 5.9e-05 13.5 0.3 1 1 6.8e-06 9.6e-05 12.9 0.3 15 42 8 35 4 36 0.89 # 14323 # 14508 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.247 1_22 - 127 HTH_27 PF13463.1 68 0.00018 13.0 0.0 1 2 4e-05 0.0011 10.4 0.0 4 54 11 64 8 70 0.92 # 16673 # 17053 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.255 1_22 - 127 HTH_27 PF13463.1 68 0.00018 13.0 0.0 2 2 0.058 1.6 0.3 0.0 6 29 97 121 94 121 0.83 # 16673 # 17053 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.255 1_23 - 554 SprT-like PF10263.4 157 3.1e-05 14.8 0.0 1 1 2.6e-06 7.3e-05 13.6 0.0 7 71 113 174 108 177 0.85 # 17043 # 18704 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.265 1_21 - 193 HTH_Tnp_IS630 PF01710.11 120 4e-05 14.4 0.0 1 1 5.2e-06 7.2e-05 13.6 0.0 17 48 159 190 137 192 0.86 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_20 - 203 HTH_Tnp_IS630 PF01710.11 120 8.2e-05 13.4 0.1 1 1 1.5e-05 0.00021 12.1 0.1 9 37 166 194 162 201 0.92 # 15097 # 15705 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_7 - 102 Cad PF03596.8 191 8.3e-42 134.1 11.0 1 1 6.6e-43 9.2e-42 134.0 11.0 95 191 2 99 1 99 0.98 # 6427 # 6732 # -1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.278 1_8 - 100 Cad PF03596.8 191 3.3e-35 112.6 5.2 1 1 2.5e-36 3.6e-35 112.5 5.2 1 78 12 89 12 99 0.93 # 6744 # 7043 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.260 1_21 - 193 HTH_40 PF14493.1 91 2.2e-05 15.8 0.0 1 1 4.9e-06 4.6e-05 14.8 0.0 8 42 155 189 153 191 0.90 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_20 - 203 HTH_40 PF14493.1 91 3.1e-05 15.3 0.1 1 1 1e-05 9.7e-05 13.7 0.1 7 31 169 193 165 195 0.92 # 15097 # 15705 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_25 - 123 HTH_40 PF14493.1 91 6.1e-05 14.4 0.2 1 2 0.011 0.11 4.0 0.1 46 83 7 49 1 50 0.72 # 20315 # 20683 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_25 - 123 HTH_40 PF14493.1 91 6.1e-05 14.4 0.2 2 2 6.7e-05 0.00063 11.1 0.0 3 46 45 88 43 119 0.86 # 20315 # 20683 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_18 - 62 HTH_3 PF01381.17 55 3.3e-22 69.3 0.2 1 1 1.3e-23 3.6e-22 69.2 0.2 1 55 5 59 5 59 0.99 # 14323 # 14508 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.247 1_27 - 153 DDE_3 PF13358.1 146 4.4e-06 17.6 0.1 1 1 4.5e-07 6.2e-06 17.1 0.1 33 95 9 72 3 126 0.76 # 23094 # 23552 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.349 1_3 - 225 DDE_3 PF13358.1 146 1.1e-05 16.3 0.2 1 1 1.1e-06 1.6e-05 15.8 0.2 17 95 67 144 55 195 0.78 # 3090 # 3764 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.326 1_3 - 225 DDE_Tnp_IS66 PF03050.9 271 3e-08 24.2 1.9 1 2 9.9e-09 1.4e-07 22.1 0.3 15 103 20 102 7 125 0.77 # 3090 # 3764 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.326 1_3 - 225 DDE_Tnp_IS66 PF03050.9 271 3e-08 24.2 1.9 2 2 0.017 0.23 1.6 0.1 243 261 163 180 156 189 0.77 # 3090 # 3764 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.326 1_28 - 70 DDE_Tnp_IS66 PF03050.9 271 8.5e-06 16.2 0.0 1 1 6.7e-07 9.4e-06 16.0 0.0 18 58 11 51 2 62 0.84 # 23522 # 23731 # -1 # ID=1_28;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.352 1_21 - 193 TrmB PF01978.14 68 1.4e-06 19.1 0.0 1 1 3.7e-07 3.5e-06 17.9 0.0 8 48 147 186 144 188 0.77 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_25 - 123 TrmB PF01978.14 68 3.6e-06 17.8 0.0 1 1 6.8e-07 6.3e-06 17.0 0.0 15 62 49 97 41 101 0.84 # 20315 # 20683 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_20 - 203 TrmB PF01978.14 68 0.00022 12.1 0.6 1 1 7.3e-05 0.00068 10.5 0.2 19 42 172 195 163 196 0.83 # 15097 # 15705 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_18 - 62 HTH_26 PF13443.1 63 3.9e-10 31.0 0.0 1 1 1.5e-11 4.3e-10 30.9 0.0 1 58 4 60 4 61 0.97 # 14323 # 14508 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.247 1_23 - 554 Peptidase_M48 PF01435.13 226 5.5e-05 13.9 0.1 1 1 5.7e-06 0.00016 12.4 0.1 63 129 140 203 80 237 0.76 # 17043 # 18704 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.265 1_19 - 113 zf-DHHC PF01529.15 174 0.078 3.4 9.7 1 1 0.011 0.31 1.5 9.7 91 155 43 98 2 111 0.38 # 14513 # 14851 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.248 1_21 - 193 Trp_repressor PF01371.14 88 8.3e-06 16.9 0.7 1 2 0.057 1.6 -0.1 0.1 3 33 87 117 85 124 0.83 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_21 - 193 Trp_repressor PF01371.14 88 8.3e-06 16.9 0.7 2 2 2.8e-06 7.7e-05 13.7 0.1 39 79 150 190 146 192 0.89 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_12 - 315 RepA_N PF06970.6 76 1.6e-35 111.9 4.9 1 1 1.8e-36 5e-35 110.4 4.9 1 76 15 90 15 90 0.99 # 8663 # 9607 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.277 1_28 - 70 HTH_32 PF13565.1 77 8.1e-07 21.0 0.2 1 1 1.4e-07 1.3e-06 20.3 0.2 49 76 14 38 6 39 0.86 # 23522 # 23731 # -1 # ID=1_28;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.352 1_21 - 193 HTH_32 PF13565.1 77 4.8e-06 18.5 0.3 1 1 1e-06 9.5e-06 17.5 0.3 19 77 131 181 118 181 0.80 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_3 - 225 HTH_32 PF13565.1 77 6.8e-05 14.8 0.1 1 1 5.5e-05 0.00051 12.0 0.1 48 76 25 50 9 51 0.85 # 3090 # 3764 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.326 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/4a9763d1-570d-4662-980d-35a59d628aac # Target file: checkm_output/bins/pGCA_000383005.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000383005.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4a9763d1-570d-4662-980d-35a59d628aac checkm_output/bins/pGCA_000383005.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:52:23 2021 # [ok]