# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_3 - 586 Peptidase_M56 PF05569.6 299 2.3e-95 309.8 13.8 1 1 9.4e-97 2.3e-95 309.8 13.8 2 299 4 298 3 298 0.99 # 1103 # 2860 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.263 2_5 - 193 MarR_2 PF12802.2 62 8.7e-06 16.4 0.0 1 2 0.0094 0.12 3.2 0.1 23 45 112 134 78 137 0.90 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_5 - 193 MarR_2 PF12802.2 62 8.7e-06 16.4 0.0 2 2 3.4e-05 0.00043 11.0 0.0 7 45 149 184 144 187 0.90 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_7 - 89 MarR_2 PF12802.2 62 9.4e-05 13.1 0.0 1 1 1e-05 0.00013 12.6 0.0 24 55 25 56 4 60 0.86 # 5180 # 5446 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 2_7 - 89 HTH_Crp_2 PF13545.1 76 8.6e-06 16.5 0.0 1 1 4.3e-07 1.1e-05 16.2 0.0 33 62 27 56 2 64 0.87 # 5180 # 5446 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 2_5 - 193 Sigma70_r4_2 PF08281.7 54 9e-05 12.9 0.0 1 1 6.1e-06 0.00015 12.2 0.0 10 49 144 183 143 184 0.88 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_5 - 193 Mga PF05043.8 87 1.6e-07 22.6 0.5 1 2 0.007 0.17 3.2 0.1 24 52 104 132 74 137 0.83 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_5 - 193 Mga PF05043.8 87 1.6e-07 22.6 0.5 2 2 2.8e-07 6.9e-06 17.3 0.0 16 56 147 186 143 187 0.94 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_5 - 193 HTH_30 PF13556.1 59 0.00016 12.2 0.1 1 1 1.3e-05 0.00032 11.3 0.1 3 37 151 185 150 190 0.93 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_5 - 193 Mor PF08765.6 108 0.00018 12.2 0.1 1 1 1.5e-05 0.00037 11.3 0.1 71 102 159 190 121 192 0.83 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_5 - 193 HTH_22 PF13309.1 64 2.7e-08 24.5 0.4 1 2 0.084 1.1 0.2 0.0 23 38 70 85 64 85 0.85 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_5 - 193 HTH_22 PF13309.1 64 2.7e-08 24.5 0.4 2 2 4.8e-08 6e-07 20.2 0.1 12 64 136 182 128 182 0.82 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_6 - 203 HTH_22 PF13309.1 64 1.8e-07 21.9 1.5 1 2 0.00096 0.012 6.4 0.3 3 41 109 147 107 149 0.93 # 4198 # 4806 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.310 2_6 - 203 HTH_22 PF13309.1 64 1.8e-07 21.9 1.5 2 2 8.8e-06 0.00011 12.9 0.0 43 61 176 194 171 195 0.94 # 4198 # 4806 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.310 4_1 - 225 HEM4 PF02602.10 231 0.00012 12.3 0.0 1 1 8e-06 0.0002 11.6 0.0 125 154 24 53 9 70 0.79 # 57 # 731 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.339 1_9 - 123 Phos_pyr_kin PF08543.7 246 1.6e-05 15.1 0.0 1 1 6.8e-07 1.7e-05 15.0 0.0 136 233 20 106 2 119 0.80 # 7328 # 7696 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.339 1_7 - 312 HTH_36 PF13730.1 55 8.5e-08 23.3 0.9 1 1 1.8e-08 2.3e-07 21.9 0.9 2 54 32 95 31 96 0.86 # 4978 # 5913 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 2_5 - 193 HTH_36 PF13730.1 55 0.00016 12.8 0.1 1 1 2.5e-05 0.00031 11.9 0.1 28 49 163 184 145 186 0.93 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_8 - 728 Hydrolase PF00702.21 215 1.7e-47 153.5 0.6 1 1 1.4e-48 3.6e-47 152.4 0.6 1 213 409 630 409 632 0.91 # 5439 # 7622 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.381 2_4 - 127 Penicillinase_R PF03965.11 115 9.6e-38 119.8 1.3 1 1 4.3e-39 1.1e-37 119.7 1.3 1 114 8 121 8 122 0.99 # 2850 # 3230 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.257 4_1 - 225 AAA_17 PF13207.1 121 9.6e-07 20.6 1.2 1 1 6.7e-08 1.7e-06 19.9 1.2 23 113 24 122 21 206 0.85 # 57 # 731 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.339 1_10 - 274 HTH_1 PF00126.22 60 5.2e-18 55.6 0.0 1 1 3.8e-19 9.4e-18 54.8 0.0 5 60 5 60 1 60 0.92 # 7920 # 8741 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 2_7 - 89 HTH_34 PF13601.1 80 6e-08 23.7 0.1 1 1 4e-09 1e-07 22.9 0.0 2 49 10 57 9 61 0.93 # 5180 # 5446 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 2_6 - 203 HTH_29 PF13551.1 112 6e-07 20.6 0.2 1 1 4.7e-07 5.9e-06 17.4 0.0 4 34 168 197 166 200 0.91 # 4198 # 4806 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.310 2_5 - 193 HTH_29 PF13551.1 112 8.2e-07 20.2 0.6 1 2 0.018 0.23 2.7 0.2 32 69 121 156 118 159 0.73 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_5 - 193 HTH_29 PF13551.1 112 8.2e-07 20.2 0.6 2 2 1.1e-06 1.4e-05 16.2 0.0 7 39 156 187 151 190 0.91 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_4 - 127 MarR PF01047.17 59 3.8e-09 27.2 0.1 1 1 8e-10 6.7e-09 26.4 0.1 1 54 8 65 8 65 0.97 # 2850 # 3230 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.257 2_7 - 89 MarR PF01047.17 59 8.1e-07 19.7 0.0 1 1 1.5e-07 1.2e-06 19.1 0.0 14 51 19 56 8 57 0.89 # 5180 # 5446 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 2_5 - 193 MarR PF01047.17 59 0.00014 12.6 0.1 1 1 4.4e-05 0.00037 11.2 0.0 1 41 145 184 145 188 0.89 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_7 - 89 HTH_20 PF12840.2 61 1e-14 45.1 0.0 1 1 5.4e-16 1.3e-14 44.7 0.0 4 61 2 59 1 59 0.98 # 5180 # 5446 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 2_5 - 193 RuvB_C PF05491.8 76 0.00017 12.2 0.4 1 2 0.038 0.95 0.2 0.1 55 67 121 133 117 139 0.82 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_5 - 193 RuvB_C PF05491.8 76 0.00017 12.2 0.4 2 2 8.6e-05 0.0021 8.7 0.0 6 43 145 178 142 182 0.86 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_7 - 89 HTH_5 PF01022.15 47 5e-20 62.0 0.0 1 1 3.5e-21 8.7e-20 61.2 0.0 1 46 7 53 7 54 0.97 # 5180 # 5446 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 2_5 - 193 Terminase_5 PF06056.7 58 8.1e-05 13.2 0.1 1 1 6.2e-06 0.00016 12.3 0.1 7 36 154 183 153 189 0.92 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_5 - 193 HTH_24 PF13412.1 48 1.5e-10 31.4 0.3 1 1 2.1e-11 2.6e-10 30.6 0.3 1 41 145 184 145 188 0.96 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_7 - 89 HTH_24 PF13412.1 48 3.4e-05 14.2 0.0 1 1 4.1e-06 5.1e-05 13.6 0.0 2 47 7 52 7 53 0.93 # 5180 # 5446 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 2_5 - 193 HTH_AsnC-type PF13404.1 42 4.4e-05 14.0 0.0 1 1 3.8e-06 9.4e-05 12.9 0.0 3 41 147 184 145 185 0.90 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 4_1 - 225 DDE_Tnp_IS240 PF13610.1 140 1.4e-44 142.4 2.7 1 1 8e-46 2e-44 141.9 2.7 3 139 72 203 70 204 0.95 # 57 # 731 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.339 2_5 - 193 HTH_IclR PF09339.5 52 6.3e-05 13.5 0.0 1 1 1.3e-05 0.00016 12.2 0.0 7 43 151 185 150 188 0.85 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_7 - 89 HTH_IclR PF09339.5 52 0.00015 12.3 0.0 1 1 2e-05 0.00025 11.7 0.0 17 48 21 52 1 55 0.81 # 5180 # 5446 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 2_6 - 203 HTH_7 PF02796.10 45 4.9e-24 75.0 2.1 1 1 7.5e-25 9.3e-24 74.1 0.2 1 45 147 199 147 199 0.95 # 4198 # 4806 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.310 2_5 - 193 HTH_7 PF02796.10 45 5.7e-20 62.0 0.2 1 1 9.9e-21 1.2e-19 60.9 0.2 1 43 140 182 140 184 0.98 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_5 - 193 HTH_DeoR PF08220.7 57 7.5e-05 13.3 0.0 1 1 1.4e-05 0.00017 12.1 0.0 16 41 162 187 149 189 0.83 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_4 - 127 HTH_DeoR PF08220.7 57 0.0002 11.9 0.3 1 1 6.9e-05 0.00086 9.9 0.1 8 46 18 60 14 62 0.76 # 2850 # 3230 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.257 2_5 - 193 Phage_antitermQ PF06530.7 126 0.00014 12.4 0.0 1 2 0.011 0.28 1.7 0.0 48 95 55 101 23 113 0.73 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_5 - 193 Phage_antitermQ PF06530.7 126 0.00014 12.4 0.0 2 2 9.1e-05 0.0023 8.5 0.0 62 101 144 183 141 189 0.90 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_6 - 203 HTH_23 PF13384.1 50 2e-09 27.9 0.1 1 1 6.1e-10 5.1e-09 26.6 0.1 6 39 164 197 159 199 0.89 # 4198 # 4806 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.310 2_5 - 193 HTH_23 PF13384.1 50 8.7e-09 25.9 0.0 1 1 2.3e-09 2e-08 24.8 0.0 13 42 156 185 150 190 0.86 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 4_1 - 225 HTH_23 PF13384.1 50 2.9e-06 17.9 0.9 1 1 6.2e-06 5.1e-05 13.9 0.1 28 41 41 54 40 57 0.92 # 57 # 731 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.339 3_1 - 112 GyrI-like PF06445.10 155 5.8e-21 66.1 0.1 1 1 2.6e-22 6.4e-21 65.9 0.1 1 103 1 104 1 110 0.96 # 168 # 503 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 2_8 - 728 Hydrolase_3 PF08282.7 254 1.4e-06 19.0 3.6 1 2 0.068 1.7 -1.0 0.1 15 36 549 570 543 587 0.86 # 5439 # 7622 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.381 2_8 - 728 Hydrolase_3 PF08282.7 254 1.4e-06 19.0 3.6 2 2 7.1e-08 1.8e-06 18.6 1.0 194 239 604 650 602 654 0.85 # 5439 # 7622 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.381 2_5 - 193 UPF0122 PF04297.9 101 4.9e-05 14.3 0.1 1 1 5.8e-06 0.00014 12.8 0.0 19 59 146 186 142 190 0.86 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_4 - 127 S-AdoMet_synt_M PF02772.11 120 0.00014 12.8 1.9 1 2 1.4e-05 0.00035 11.5 1.2 64 106 21 62 3 74 0.78 # 2850 # 3230 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.257 2_4 - 127 S-AdoMet_synt_M PF02772.11 120 0.00014 12.8 1.9 2 2 0.045 1.1 0.2 0.0 64 90 89 115 70 126 0.62 # 2850 # 3230 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.257 1_8 - 256 TIGR02168 TIGR02168 1181 2.3e-06 16.1 35.0 1 1 1.2e-07 2.9e-06 15.8 35.0 253 436 48 231 30 245 0.81 # 6353 # 7120 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.270 2_5 - 193 HTH_11 PF08279.7 55 3.4e-09 27.3 0.1 1 1 1e-09 8.3e-09 26.0 0.1 4 41 151 186 147 189 0.81 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_6 - 203 HTH_11 PF08279.7 55 9.3e-05 13.1 1.3 1 1 3e-05 0.00025 11.7 0.1 18 34 178 194 166 195 0.80 # 4198 # 4806 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.310 1_8 - 256 HTH_11 PF08279.7 55 0.0001 12.9 0.0 1 1 6.8e-05 0.00056 10.6 0.0 19 40 5 26 2 34 0.87 # 6353 # 7120 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.270 4_1 - 225 Arg_repressor PF01316.16 70 7.6e-05 13.3 0.0 1 1 9.2e-06 0.00023 11.7 0.0 24 48 30 54 25 74 0.81 # 57 # 731 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.339 2_6 - 203 HTH_28 PF13518.1 52 8.1e-09 26.4 0.0 1 1 2.8e-09 2.3e-08 25.0 0.0 4 34 167 197 166 200 0.94 # 4198 # 4806 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.310 2_5 - 193 HTH_28 PF13518.1 52 5.6e-06 17.3 0.0 1 1 1.6e-06 1.3e-05 16.1 0.0 8 38 156 186 152 189 0.93 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 4_1 - 225 HTH_28 PF13518.1 52 2.2e-05 15.4 0.4 1 1 1.2e-05 0.0001 13.3 0.4 15 36 31 54 17 55 0.80 # 57 # 731 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.339 2_8 - 728 HAD PF12710.2 192 1.2e-16 52.4 0.0 1 1 1e-17 2.5e-16 51.3 0.0 1 191 412 628 412 629 0.59 # 5439 # 7622 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.381 1_8 - 256 HlyD PF00529.15 305 0.00025 11.3 17.2 1 1 7.3e-06 0.00018 11.7 15.8 43 133 106 195 95 216 0.83 # 6353 # 7120 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.270 4_1 - 225 HTH_Tnp_4 PF13613.1 53 4.8e-05 13.9 0.3 1 1 6.5e-06 0.00016 12.2 0.3 30 49 41 60 18 63 0.84 # 57 # 731 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.339 2_7 - 89 LexA_DNA_bind PF01726.11 65 0.00022 11.8 0.0 1 1 1.4e-05 0.00036 11.1 0.0 29 58 26 54 24 59 0.83 # 5180 # 5446 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 2_6 - 203 CENP-B_N PF04218.8 53 4.3e-07 20.3 2.8 1 2 0.0024 0.059 3.9 0.3 13 26 117 130 115 143 0.85 # 4198 # 4806 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.310 2_6 - 203 CENP-B_N PF04218.8 53 4.3e-07 20.3 2.8 2 2 2.9e-07 7.2e-06 16.4 0.1 14 44 167 197 166 202 0.88 # 4198 # 4806 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.310 1_9 - 123 PfkB PF00294.19 301 2e-19 60.7 0.0 1 1 9.5e-21 2.4e-19 60.5 0.0 190 297 16 113 4 118 0.84 # 7328 # 7696 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.339 1_7 - 312 YTH PF04146.10 140 2.9e-05 14.6 0.1 1 1 2.7e-06 6.8e-05 13.5 0.1 35 116 54 142 41 180 0.64 # 4978 # 5913 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 3_2 - 214 Biotin_lipoyl_2 PF13533.1 50 0.00022 11.9 0.0 1 1 2.4e-05 0.00059 10.5 0.0 19 30 177 188 177 190 0.88 # 767 # 1408 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.254 2_5 - 193 TetR_N PF00440.18 47 0.00011 12.9 0.1 1 1 1.7e-05 0.00042 11.0 0.0 16 36 160 180 158 180 0.92 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 4_1 - 225 rve PF00665.21 120 1.3e-18 58.2 0.6 1 2 0.041 1 0.5 0.0 83 102 30 49 12 52 0.89 # 57 # 731 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.339 4_1 - 225 rve PF00665.21 120 1.3e-18 58.2 0.6 2 2 3.4e-19 8.5e-18 55.6 0.4 2 117 66 174 65 176 0.93 # 57 # 731 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.339 2_5 - 193 HTH_Mga PF08280.6 59 0.00021 12.1 1.2 1 1 2.1e-05 0.00051 10.8 0.3 2 44 144 185 143 187 0.91 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 4_1 - 225 HTH_Tnp_1 PF01527.15 76 0.0022 9.0 3.7 1 2 0.00011 0.0027 8.7 0.3 24 47 29 54 5 69 0.77 # 57 # 731 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.339 4_1 - 225 HTH_Tnp_1 PF01527.15 76 0.0022 9.0 3.7 2 2 0.047 1.2 0.2 0.2 38 54 98 114 71 138 0.59 # 57 # 731 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.339 2_5 - 193 HTH_38 PF13936.1 44 4.3e-07 20.5 0.0 1 1 8e-08 1e-06 19.3 0.0 13 43 153 183 143 184 0.87 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_6 - 203 HTH_38 PF13936.1 44 4.2e-06 17.3 2.7 1 2 0.076 0.95 0.1 0.4 6 24 121 139 119 143 0.82 # 4198 # 4806 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.310 2_6 - 203 HTH_38 PF13936.1 44 4.2e-06 17.3 2.7 2 2 6.2e-07 7.7e-06 16.4 0.1 15 39 170 194 158 198 0.90 # 4198 # 4806 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.310 2_6 - 203 Sigma70_r4 PF04545.11 50 4.1e-05 13.9 0.3 1 1 3.7e-06 9.2e-05 12.7 0.3 9 42 160 197 159 198 0.94 # 4198 # 4806 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.310 2_4 - 127 HTH_27 PF13463.1 68 0.00016 13.0 0.0 1 2 4e-05 0.001 10.4 0.0 4 54 11 64 8 70 0.92 # 2850 # 3230 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.257 2_4 - 127 HTH_27 PF13463.1 68 0.00016 13.0 0.0 2 2 0.058 1.4 0.3 0.0 6 29 97 121 94 121 0.83 # 2850 # 3230 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.257 2_3 - 586 SprT-like PF10263.4 157 2.9e-05 14.7 0.0 1 1 2.8e-06 7.1e-05 13.5 0.0 7 71 145 206 140 209 0.85 # 1103 # 2860 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.263 2_5 - 193 HTH_Tnp_IS630 PF01710.11 120 3.6e-05 14.4 0.0 1 1 5.2e-06 6.4e-05 13.6 0.0 17 48 159 190 137 192 0.86 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_6 - 203 HTH_Tnp_IS630 PF01710.11 120 5.1e-05 13.9 0.1 1 1 1.2e-05 0.00014 12.5 0.1 9 37 166 194 163 201 0.91 # 4198 # 4806 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.310 2_5 - 193 HTH_40 PF14493.1 91 1.9e-05 15.8 0.0 1 1 3.3e-06 4.1e-05 14.8 0.0 8 42 155 189 153 191 0.90 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_6 - 203 HTH_40 PF14493.1 91 4.4e-05 14.7 0.1 1 1 1.1e-05 0.00014 13.1 0.1 7 31 169 193 165 195 0.92 # 4198 # 4806 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.310 4_1 - 225 DDE_3 PF13358.1 146 2.5e-06 18.3 0.3 1 1 1.8e-07 4.5e-06 17.4 0.3 26 95 74 144 57 206 0.76 # 57 # 731 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.339 4_1 - 225 DDE_Tnp_IS66 PF03050.9 271 1.2e-07 22.1 4.1 1 2 1.1e-08 2.7e-07 21.0 1.3 16 97 21 96 7 135 0.75 # 57 # 731 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.339 4_1 - 225 DDE_Tnp_IS66 PF03050.9 271 1.2e-07 22.1 4.1 2 2 0.008 0.2 1.7 0.1 243 264 163 184 156 190 0.81 # 57 # 731 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.339 2_5 - 193 TrmB PF01978.14 68 1.3e-06 19.1 0.0 1 1 2.5e-07 3.1e-06 17.9 0.0 8 48 147 186 144 188 0.77 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_7 - 89 TrmB PF01978.14 68 1.9e-06 18.6 0.0 1 1 2e-07 2.4e-06 18.2 0.0 15 62 15 63 7 67 0.84 # 5180 # 5446 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 2_3 - 586 Peptidase_M48 PF01435.13 226 0.00013 12.5 0.0 1 1 1.1e-05 0.00028 11.4 0.0 64 124 173 230 116 268 0.77 # 1103 # 2860 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.263 2_5 - 193 Trp_repressor PF01371.14 88 7.4e-06 16.9 0.7 1 2 0.057 1.4 -0.1 0.1 3 33 87 117 85 124 0.83 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_5 - 193 Trp_repressor PF01371.14 88 7.4e-06 16.9 0.7 2 2 2.8e-06 6.9e-05 13.7 0.1 39 79 150 190 146 192 0.89 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_7 - 312 RepA_N PF06970.6 76 2e-35 111.5 6.4 1 1 2.4e-36 5.9e-35 110.0 6.4 1 76 15 90 15 90 0.99 # 4978 # 5913 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 4_1 - 225 HTH_32 PF13565.1 77 1.8e-08 26.1 0.7 1 2 6.3e-07 7.9e-06 17.6 0.1 49 76 26 50 11 51 0.86 # 57 # 731 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.339 4_1 - 225 HTH_32 PF13565.1 77 1.8e-08 26.1 0.7 2 2 0.0017 0.021 6.7 0.0 28 63 135 171 102 183 0.72 # 57 # 731 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.339 2_5 - 193 HTH_32 PF13565.1 77 4.3e-06 18.5 0.3 1 1 6.8e-07 8.5e-06 17.5 0.3 19 77 131 181 118 181 0.80 # 3494 # 4072 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/1e13277e-8577-4cef-832e-3c96418fdc98 # Target file: checkm_output/bins/pGCA_000239235.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000239235.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1e13277e-8577-4cef-832e-3c96418fdc98 checkm_output/bins/pGCA_000239235.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:52:12 2021 # [ok]