# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_12 - 257 KR PF08659.5 181 6.3e-07 20.1 0.0 1 1 4.1e-08 9.9e-07 19.5 0.0 12 90 20 95 8 112 0.82 # 9996 # 10766 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.358 1_8 - 248 GerE PF00196.14 58 2.6e-06 17.7 1.1 1 2 0.00033 0.0039 7.5 0.1 19 42 2 25 2 27 0.90 # 6407 # 7150 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.296 1_8 - 248 GerE PF00196.14 58 2.6e-06 17.7 1.1 2 2 0.00014 0.0016 8.7 0.1 21 45 97 121 92 133 0.87 # 6407 # 7150 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.296 1_17 - 203 GerE PF00196.14 58 7.8e-05 12.9 0.1 1 1 1.3e-05 0.00016 11.9 0.1 11 35 168 192 166 196 0.94 # 15275 # 15883 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.325 1_20 - 586 Peptidase_M56 PF05569.6 299 5.2e-95 308.6 14.0 1 1 3.6e-96 8.6e-95 307.9 14.0 2 299 4 298 3 298 0.99 # 17226 # 18983 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.261 1_18 - 193 MarR_2 PF12802.2 62 8.5e-06 16.4 0.0 1 2 0.0046 0.11 3.2 0.1 23 45 112 134 75 137 0.90 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_18 - 193 MarR_2 PF12802.2 62 8.5e-06 16.4 0.0 2 2 1.9e-05 0.00045 10.9 0.0 7 45 149 184 144 187 0.90 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_17 - 203 HTH_19 PF12844.2 64 0.0001 13.3 0.1 1 1 8.3e-06 0.0002 12.4 0.1 15 36 178 199 170 202 0.90 # 15275 # 15883 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.325 1_18 - 193 Mga PF05043.8 87 4.7e-07 21.0 0.4 1 2 0.0077 0.18 3.1 0.1 24 52 104 132 83 137 0.82 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_18 - 193 Mga PF05043.8 87 4.7e-07 21.0 0.4 2 2 8.8e-07 2.1e-05 15.7 0.0 18 56 149 186 144 187 0.92 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_17 - 203 Mor PF08765.6 108 0.0001 13.0 0.2 1 1 8.2e-06 0.0002 12.1 0.2 6 92 108 195 105 197 0.91 # 15275 # 15883 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.325 1_18 - 193 HTH_22 PF13309.1 64 1.2e-07 22.4 0.2 1 1 2e-07 1.6e-06 18.8 0.1 27 64 150 182 129 182 0.73 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_17 - 203 HTH_22 PF13309.1 64 2.9e-07 21.1 1.4 1 2 0.0031 0.024 5.4 0.2 3 41 109 147 107 149 0.93 # 15275 # 15883 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.325 1_17 - 203 HTH_22 PF13309.1 64 2.9e-07 21.1 1.4 2 2 8.2e-06 6.6e-05 13.6 0.0 43 61 176 194 171 195 0.94 # 15275 # 15883 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.325 1_8 - 248 HTH_22 PF13309.1 64 3.1e-05 14.6 1.0 1 1 1.6e-05 0.00013 12.7 0.0 43 64 2 23 1 23 0.92 # 6407 # 7150 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.296 1_12 - 257 adh_short PF00106.20 167 5.5e-10 30.3 0.0 1 1 2.8e-11 6.7e-10 30.0 0.0 10 163 18 175 7 179 0.78 # 9996 # 10766 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.358 1_1 - 225 MULE PF10551.4 93 6.2e-05 14.1 0.1 1 1 7.2e-06 0.00017 12.7 0.0 19 78 92 148 77 165 0.82 # 185 # 859 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_7 - 325 HTH_36 PF13730.1 55 3.9e-05 14.7 0.6 1 1 8.3e-06 9.9e-05 13.4 0.6 2 55 31 95 30 95 0.75 # 5007 # 5981 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.282 1_18 - 193 HTH_36 PF13730.1 55 6.4e-05 14.0 0.2 1 1 1.1e-05 0.00013 13.0 0.2 28 49 163 184 144 186 0.92 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_9 - 41 DDE_Tnp_1_7 PF13843.1 351 0.00014 11.8 0.0 1 1 6e-06 0.00014 11.8 0.0 103 128 5 30 1 39 0.87 # 7268 # 7390 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_19 - 127 Penicillinase_R PF03965.11 115 1e-37 119.7 1.4 1 1 4.7e-39 1.1e-37 119.5 1.4 1 114 8 121 8 122 0.99 # 16856 # 17236 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.252 1_1 - 225 AAA_17 PF13207.1 121 6e-05 14.8 0.9 1 1 4.1e-06 9.9e-05 14.1 0.9 23 112 24 121 19 178 0.80 # 185 # 859 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_13 - 561 DDE_Tnp_1_6 PF13751.1 125 1.2e-32 103.5 0.7 1 2 0.027 0.64 1.0 1.5 39 71 217 248 207 281 0.68 # 11052 # 12734 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_13 - 561 DDE_Tnp_1_6 PF13751.1 125 1.2e-32 103.5 0.7 2 2 5.1e-34 1.2e-32 103.5 0.7 1 124 392 518 392 519 0.94 # 11052 # 12734 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_17 - 203 HTH_29 PF13551.1 112 1.4e-06 19.4 0.1 1 1 8.9e-07 1.1e-05 16.5 0.0 4 34 168 197 166 198 0.91 # 15275 # 15883 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.325 1_18 - 193 HTH_29 PF13551.1 112 3.5e-06 18.1 0.4 1 2 0.054 0.64 1.1 0.2 33 63 122 150 119 159 0.70 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_18 - 193 HTH_29 PF13551.1 112 3.5e-06 18.1 0.4 2 2 3.3e-06 3.9e-05 14.7 0.0 7 39 156 187 152 190 0.91 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_19 - 127 MarR PF01047.17 59 3.9e-09 27.1 0.1 1 1 2.7e-10 6.4e-09 26.4 0.1 1 54 8 65 8 65 0.97 # 16856 # 17236 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.252 1_3 - 116 HTH_20 PF12840.2 61 1.9e-05 15.4 0.0 1 1 9.9e-07 2.4e-05 15.1 0.0 15 57 48 89 34 93 0.87 # 2977 # 3324 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.253 1_3 - 116 HTH_5 PF01022.15 47 9.5e-17 51.4 1.7 1 1 1.4e-17 1.6e-16 50.7 1.7 1 45 41 86 41 88 0.95 # 2977 # 3324 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.253 1_18 - 193 HTH_5 PF01022.15 47 0.00023 11.8 0.0 1 1 3.7e-05 0.00045 10.8 0.0 19 42 164 187 150 188 0.83 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_18 - 193 Terminase_5 PF06056.7 58 0.00016 12.2 0.1 1 1 1.2e-05 0.0003 11.3 0.1 7 36 154 183 153 189 0.91 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_18 - 193 HTH_24 PF13412.1 48 4.8e-09 26.5 0.2 1 1 3.5e-10 8.4e-09 25.7 0.2 1 41 145 184 145 188 0.95 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_1 - 225 DDE_Tnp_IS240 PF13610.1 140 7.9e-43 136.7 1.6 1 1 4.7e-44 1.1e-42 136.2 1.6 3 139 72 203 70 204 0.95 # 185 # 859 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_18 - 193 HTH_IclR PF09339.5 52 4.8e-05 13.9 0.0 1 1 5.1e-06 0.00012 12.6 0.0 6 43 150 185 147 188 0.86 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_8 - 248 HTH_10 PF04967.7 53 0.00011 12.7 0.0 1 1 1e-05 0.00024 11.6 0.0 25 46 3 24 2 30 0.87 # 6407 # 7150 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.296 1_17 - 203 HTH_7 PF02796.10 45 3.1e-22 69.2 0.4 1 1 2.6e-23 3.1e-22 69.2 0.4 1 44 147 198 147 199 0.95 # 15275 # 15883 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.325 1_18 - 193 HTH_7 PF02796.10 45 4.7e-20 62.2 0.2 1 1 9e-21 1.1e-19 61.0 0.2 1 44 140 183 140 184 0.98 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_11 - 358 Transposase_20 PF02371.11 87 1.6e-25 80.0 0.0 1 1 1.5e-26 3.5e-25 78.9 0.0 2 77 225 300 224 314 0.93 # 8512 # 9585 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_18 - 193 HTH_DeoR PF08220.7 57 1.7e-05 15.2 0.0 1 1 5e-06 4e-05 14.1 0.0 16 41 162 187 148 189 0.81 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_8 - 248 HTH_DeoR PF08220.7 57 0.00014 12.3 2.0 1 1 3.4e-05 0.00027 11.4 0.0 16 33 3 20 2 30 0.84 # 6407 # 7150 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.296 1_19 - 127 HTH_DeoR PF08220.7 57 0.00019 11.9 0.3 1 1 0.0001 0.00082 9.9 0.1 8 46 18 60 14 62 0.76 # 16856 # 17236 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.252 1_12 - 257 2-Hacid_dh_C PF02826.14 178 0.0002 11.4 0.1 1 2 2.5e-05 0.00061 9.8 0.0 33 78 3 51 1 67 0.79 # 9996 # 10766 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.358 1_12 - 257 2-Hacid_dh_C PF02826.14 178 0.0002 11.4 0.1 2 2 0.061 1.5 -1.2 0.0 27 51 60 84 51 87 0.48 # 9996 # 10766 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.358 1_18 - 193 Phage_antitermQ PF06530.7 126 0.00018 12.0 0.0 1 2 0.018 0.44 1.0 0.0 52 95 58 101 24 112 0.76 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_18 - 193 Phage_antitermQ PF06530.7 126 0.00018 12.0 0.0 2 2 8.1e-05 0.0019 8.7 0.0 62 101 144 183 141 189 0.90 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_24 - 163 Peptidase_M50 PF02163.17 192 0.026 4.3 11.1 1 1 0.0036 0.085 2.6 11.1 117 142 35 119 8 124 0.66 # 23462 # 23950 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.188 1_17 - 203 HTH_23 PF13384.1 50 1.1e-09 28.7 0.1 1 1 5.1e-10 3.1e-09 27.3 0.1 6 39 164 197 159 201 0.89 # 15275 # 15883 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.325 1_18 - 193 HTH_23 PF13384.1 50 1.9e-08 24.8 0.0 1 1 7.9e-09 4.8e-08 23.5 0.0 13 42 156 185 150 190 0.88 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_8 - 248 HTH_23 PF13384.1 50 3.9e-06 17.4 0.1 1 1 2.5e-06 1.5e-05 15.5 0.0 18 42 2 26 2 32 0.89 # 6407 # 7150 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.296 1_1 - 225 HTH_23 PF13384.1 50 4.8e-05 14.0 0.3 1 1 8e-05 0.00048 10.8 0.1 29 41 42 54 41 58 0.93 # 185 # 859 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_9 - 41 Hydrolase_3 PF08282.7 254 2e-08 24.9 0.0 1 1 9.2e-10 2.2e-08 24.8 0.0 182 211 2 31 1 32 0.92 # 7268 # 7390 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_18 - 193 UPF0122 PF04297.9 101 9.3e-05 13.4 0.0 1 1 9e-06 0.00022 12.2 0.0 18 59 145 186 142 190 0.87 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_19 - 127 S-AdoMet_synt_M PF02772.11 120 0.00014 12.7 1.8 1 2 1.4e-05 0.00033 11.5 1.1 64 106 21 62 3 74 0.78 # 16856 # 17236 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.252 1_19 - 127 S-AdoMet_synt_M PF02772.11 120 0.00014 12.7 1.8 2 2 0.067 1.6 -0.4 0.0 66 89 91 114 69 125 0.58 # 16856 # 17236 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.252 1_8 - 248 TIGR02168 TIGR02168 1181 0.0021 6.2 34.1 1 1 0.00011 0.0026 6.0 34.1 246 452 28 235 2 240 0.66 # 6407 # 7150 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.296 1_18 - 193 HTH_11 PF08279.7 55 2.7e-09 27.5 0.1 1 1 7.8e-10 6.3e-09 26.4 0.1 2 41 149 186 148 189 0.87 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_8 - 248 HTH_11 PF08279.7 55 1.4e-07 22.1 0.9 1 1 5.5e-08 4.4e-07 20.5 0.1 17 40 3 26 2 31 0.93 # 6407 # 7150 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.296 1_17 - 203 HTH_11 PF08279.7 55 5.8e-05 13.7 0.1 1 1 2.6e-05 0.00021 11.9 0.1 18 34 178 194 166 195 0.77 # 15275 # 15883 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.325 1_12 - 257 adh_short_C2 PF13561.1 241 3.3e-79 256.9 0.0 1 1 1.6e-80 3.8e-79 256.7 0.0 1 241 13 253 13 253 0.98 # 9996 # 10766 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.358 1_18 - 193 SpoIIID PF12116.3 82 0.00015 12.7 0.0 1 1 1.2e-05 0.00029 11.7 0.0 4 40 145 181 142 191 0.86 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_17 - 203 HTH_28 PF13518.1 52 5.3e-09 26.9 0.0 1 1 2.2e-09 1.3e-08 25.7 0.0 4 33 167 196 166 201 0.93 # 15275 # 15883 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.325 1_18 - 193 HTH_28 PF13518.1 52 8.7e-06 16.7 0.0 1 1 4.1e-06 2.5e-05 15.2 0.0 8 38 156 186 155 189 0.93 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_1 - 225 HTH_28 PF13518.1 52 0.00011 13.2 2.9 1 1 2.2e-05 0.00013 12.9 0.7 14 36 30 54 17 55 0.85 # 185 # 859 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_8 - 248 HTH_28 PF13518.1 52 0.00017 12.5 0.0 1 1 6.6e-05 0.00039 11.4 0.0 14 37 3 26 1 30 0.91 # 6407 # 7150 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.296 1_18 - 193 HTH_Tnp_4 PF13613.1 53 0.00015 12.2 0.0 1 1 1.3e-05 0.00031 11.2 0.0 24 43 165 184 159 186 0.88 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_17 - 203 CENP-B_N PF04218.8 53 1.8e-08 24.7 3.3 1 2 0.00037 0.009 6.4 0.3 13 35 117 139 115 142 0.85 # 15275 # 15883 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.325 1_17 - 203 CENP-B_N PF04218.8 53 1.8e-08 24.7 3.3 2 2 5.7e-08 1.4e-06 18.7 0.2 14 46 167 199 166 200 0.92 # 15275 # 15883 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.325 1_4 - 206 Virul_fac_BrkB PF03631.10 260 0.0011 9.2 23.5 1 2 7.7e-06 0.00019 11.7 7.6 166 235 11 79 1 81 0.84 # 3343 # 3960 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_4 - 206 Virul_fac_BrkB PF03631.10 260 0.0011 9.2 23.5 2 2 0.0021 0.051 3.7 8.0 115 180 135 191 107 193 0.63 # 3343 # 3960 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_8 - 248 Glu_synthase PF01645.12 368 0.00097 8.9 5.6 1 2 0.054 1.3 -1.4 0.3 17 53 50 85 20 104 0.55 # 6407 # 7150 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.296 1_8 - 248 Glu_synthase PF01645.12 368 0.00097 8.9 5.6 2 2 1.5e-05 0.00036 10.3 2.9 11 71 100 159 87 163 0.82 # 6407 # 7150 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.296 1_15 - 189 TetR_N PF00440.18 47 5.7e-19 58.5 0.1 1 1 7.6e-20 9.1e-19 57.9 0.1 1 47 7 53 7 53 0.98 # 14504 # 15070 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.243 1_18 - 193 TetR_N PF00440.18 47 0.00011 12.8 0.1 1 1 3.4e-05 0.00041 11.0 0.0 16 36 160 180 158 180 0.92 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_1 - 225 rve PF00665.21 120 4.7e-15 46.7 0.9 1 1 4.2e-16 1e-14 45.6 0.3 4 117 68 174 65 176 0.87 # 185 # 859 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_18 - 193 HTH_Mga PF08280.6 59 4.7e-05 14.1 1.2 1 1 3.4e-06 8.1e-05 13.3 0.3 1 44 143 185 143 187 0.93 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_8 - 248 HTH_Tnp_1 PF01527.15 76 0.0001 13.2 0.8 1 2 0.0002 0.0024 8.8 0.0 24 50 2 29 1 57 0.71 # 6407 # 7150 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.296 1_8 - 248 HTH_Tnp_1 PF01527.15 76 0.0001 13.2 0.8 2 2 0.031 0.37 1.8 0.7 36 74 107 146 102 148 0.77 # 6407 # 7150 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.296 1_1 - 225 HTH_Tnp_1 PF01527.15 76 0.00023 12.1 0.3 1 1 3.7e-05 0.00044 11.1 0.3 24 47 29 54 5 73 0.79 # 185 # 859 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_17 - 203 HTH_38 PF13936.1 44 2.1e-06 18.2 1.9 1 1 2.9e-07 3.5e-06 17.5 0.1 15 39 170 194 159 195 0.91 # 15275 # 15883 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.325 1_18 - 193 HTH_38 PF13936.1 44 2.6e-06 17.9 0.0 1 1 5.5e-07 6.6e-06 16.6 0.0 14 41 154 181 145 183 0.90 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_17 - 203 Sigma70_r4 PF04545.11 50 5.3e-05 13.5 0.1 1 1 4.4e-06 0.00011 12.5 0.1 9 41 160 196 157 198 0.92 # 15275 # 15883 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.325 1_19 - 127 HTH_27 PF13463.1 68 0.0001 13.6 0.0 1 2 4e-05 0.00096 10.4 0.0 4 54 11 64 8 70 0.92 # 16856 # 17236 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.252 1_19 - 127 HTH_27 PF13463.1 68 0.0001 13.6 0.0 2 2 0.035 0.84 1.0 0.0 6 29 97 121 94 121 0.84 # 16856 # 17236 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.252 1_20 - 586 SprT-like PF10263.4 157 3.6e-05 14.3 0.0 1 1 3.8e-06 9.2e-05 13.0 0.0 7 71 145 206 140 209 0.82 # 17226 # 18983 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.261 1_13 - 561 DDE_Tnp_1 PF01609.16 213 2.4e-38 122.6 0.1 1 2 0.08 1.9 -1.2 0.7 102 124 226 248 217 267 0.61 # 11052 # 12734 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_13 - 561 DDE_Tnp_1 PF01609.16 213 2.4e-38 122.6 0.1 2 2 1e-39 2.4e-38 122.6 0.1 7 213 267 515 261 515 0.95 # 11052 # 12734 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_18 - 193 HTH_Tnp_IS630 PF01710.11 120 4.9e-05 13.9 0.0 1 1 7.5e-06 8.9e-05 13.1 0.0 17 48 159 190 148 192 0.85 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_17 - 203 HTH_Tnp_IS630 PF01710.11 120 8.5e-05 13.2 0.1 1 1 1.8e-05 0.00022 11.8 0.1 9 37 166 194 163 200 0.93 # 15275 # 15883 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.325 1_4 - 206 Cad PF03596.8 191 1.4e-85 276.7 16.4 1 1 6.7e-87 1.6e-85 276.5 16.4 1 191 12 203 12 203 0.99 # 3343 # 3960 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_18 - 193 HTH_40 PF14493.1 91 1.7e-05 16.0 0.0 1 1 2.9e-06 3.5e-05 15.0 0.0 8 42 155 189 153 191 0.90 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_17 - 203 HTH_40 PF14493.1 91 3.2e-05 15.1 0.1 1 1 7.1e-06 8.6e-05 13.7 0.1 7 31 169 193 165 194 0.92 # 15275 # 15883 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.325 1_17 - 203 HTH_3 PF01381.17 55 1.3e-05 15.9 1.6 1 1 6.3e-07 1.5e-05 15.7 0.2 7 33 173 199 170 202 0.87 # 15275 # 15883 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.325 1_1 - 225 DDE_3 PF13358.1 146 8.7e-06 16.4 0.2 1 1 4.5e-07 1.1e-05 16.1 0.2 17 95 67 144 26 197 0.81 # 185 # 859 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_1 - 225 DDE_Tnp_IS66 PF03050.9 271 8.8e-09 25.8 2.0 1 2 1.6e-09 3.8e-08 23.7 0.4 15 103 20 102 7 125 0.77 # 185 # 859 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_1 - 225 DDE_Tnp_IS66 PF03050.9 271 8.8e-09 25.8 2.0 2 2 0.0083 0.2 1.6 0.1 243 261 163 180 156 189 0.77 # 185 # 859 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_18 - 193 TrmB PF01978.14 68 2.2e-06 18.3 0.0 1 1 6.4e-07 5.1e-06 17.1 0.0 22 48 160 186 145 188 0.81 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_17 - 203 TrmB PF01978.14 68 0.00017 12.2 0.6 1 1 6.7e-05 0.00054 10.6 0.1 20 42 173 195 164 197 0.84 # 15275 # 15883 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.325 1_19 - 127 TrmB PF01978.14 68 0.0008 10.1 3.5 1 1 6.2e-05 0.0005 10.7 1.5 25 62 31 69 7 75 0.88 # 16856 # 17236 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.252 1_17 - 203 HTH_26 PF13443.1 63 0.00018 12.7 0.1 1 1 1.7e-05 0.0004 11.5 0.1 6 34 171 199 169 202 0.89 # 15275 # 15883 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.325 1_20 - 586 Peptidase_M48 PF01435.13 226 0.00013 12.4 0.0 1 1 1.2e-05 0.00028 11.3 0.0 65 124 174 230 115 268 0.77 # 17226 # 18983 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.261 1_18 - 193 Rrf2 PF02082.15 83 0.0002 12.4 0.0 1 1 2.1e-05 0.00051 11.1 0.0 14 52 150 187 147 188 0.90 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_18 - 193 Trp_repressor PF01371.14 88 9e-06 16.5 0.7 1 2 0.048 1.2 0.2 0.1 3 33 87 117 72 124 0.83 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_18 - 193 Trp_repressor PF01371.14 88 9e-06 16.5 0.7 2 2 2.5e-06 6e-05 13.9 0.1 40 79 151 190 143 192 0.86 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_7 - 325 RepA_N PF06970.6 76 3.3e-36 113.9 3.5 1 1 3.4e-37 8.2e-36 112.7 3.5 1 76 14 89 14 89 0.98 # 5007 # 5981 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.282 1_4 - 206 Sdh_cyt PF01127.17 121 0.00066 10.4 15.6 1 2 0.00031 0.0075 7.0 1.9 35 120 13 117 2 118 0.59 # 3343 # 3960 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_4 - 206 Sdh_cyt PF01127.17 121 0.00066 10.4 15.6 2 2 0.001 0.024 5.4 6.2 33 78 144 189 129 192 0.52 # 3343 # 3960 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_1 - 225 HTH_32 PF13565.1 77 2.8e-06 19.1 0.1 1 1 1.7e-06 2.1e-05 16.2 0.1 48 76 25 50 9 51 0.86 # 185 # 859 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_18 - 193 HTH_32 PF13565.1 77 1.7e-05 16.5 0.3 1 1 2.9e-06 3.4e-05 15.5 0.3 19 77 131 181 118 181 0.81 # 16014 # 16592 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/119ada1a-81a4-4de7-b081-024bac54b42d # Target file: checkm_output/bins/pGCA_000236925.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000236925.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/119ada1a-81a4-4de7-b081-024bac54b42d checkm_output/bins/pGCA_000236925.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:52:10 2021 # [ok]