# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 209 DUF258 PF03193.11 161 1.5e-09 28.1 0.1 1 1 1e-10 2.4e-09 27.4 0.1 13 67 4 59 1 70 0.87 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_1 - 248 GerE PF00196.14 58 4.2e-06 16.9 1.2 1 2 0.00047 0.0054 7.0 0.1 19 42 2 25 2 27 0.90 # 291 # 1034 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 1_1 - 248 GerE PF00196.14 58 4.2e-06 16.9 1.2 2 2 0.00016 0.0018 8.5 0.1 21 45 97 121 94 133 0.87 # 291 # 1034 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 1_12 - 203 GerE PF00196.14 58 7.6e-05 12.9 0.1 1 1 1.3e-05 0.00014 12.0 0.1 11 35 168 192 166 197 0.93 # 8744 # 9352 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_8 - 209 TIGR00157 TIGR00157 247 7.7e-05 12.8 0.1 1 1 5.1e-06 0.00012 12.2 0.1 123 144 28 49 3 67 0.76 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_14 - 600 Peptidase_M56 PF05569.6 299 6.7e-96 311.5 15.3 1 1 2.9e-97 6.7e-96 311.5 15.3 2 299 18 312 17 312 0.99 # 10631 # 12430 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_8 - 209 TIGR01978 TIGR01978 243 1.4e-23 74.1 4.0 1 1 3.8e-24 8.8e-23 71.4 4.0 2 208 3 195 2 201 0.81 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_3 - 114 Phage_CI_repr PF07022.8 66 4.7e-09 27.2 0.0 1 1 2.5e-10 5.8e-09 26.9 0.0 14 62 17 65 5 69 0.85 # 1897 # 2238 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_8 - 209 AAA_18 PF13238.1 129 0.00024 12.3 4.4 1 1 5.4e-05 0.0012 10.0 4.4 3 64 32 120 31 203 0.63 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 AAA_13 PF13166.1 712 8.2e-08 21.9 3.1 1 2 0.00016 0.0036 6.5 1.0 23 75 34 83 13 119 0.63 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 AAA_13 PF13166.1 712 8.2e-08 21.9 3.1 2 2 2.9e-07 6.7e-06 15.5 0.3 500 578 131 198 99 205 0.82 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_16 - 198 MarR_2 PF12802.2 62 1.5e-07 22.0 0.0 1 2 0.0059 0.14 2.8 0.1 23 45 112 134 101 137 0.86 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_16 - 198 MarR_2 PF12802.2 62 1.5e-07 22.0 0.0 2 2 3e-07 6.8e-06 16.6 0.0 6 48 148 187 144 188 0.90 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_8 - 209 TIGR03598 TIGR03598 186 2.3e-05 14.6 0.9 1 1 1.4e-06 3.3e-05 14.1 0.1 16 44 25 53 16 58 0.83 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_3 - 114 HTH_Crp_2 PF13545.1 76 4.8e-05 14.0 0.0 1 1 4.4e-06 0.0001 13.0 0.0 29 47 16 34 2 35 0.87 # 1897 # 2238 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_8 - 209 Zeta_toxin PF06414.7 201 3.1e-05 14.0 0.0 1 1 1.9e-06 4.4e-05 13.4 0.0 14 62 25 74 15 96 0.82 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_3 - 114 HTH_17 PF12728.2 51 4.1e-05 14.7 0.0 1 1 3.7e-06 8.4e-05 13.7 0.0 4 21 18 35 16 53 0.86 # 1897 # 2238 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_19 - 272 AAA_22 PF13401.1 131 1.1e-28 90.9 0.0 1 1 1.6e-29 1.9e-28 90.1 0.0 2 131 25 171 24 171 0.86 # 15065 # 15880 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.298 1_8 - 209 AAA_22 PF13401.1 131 9.4e-07 19.9 1.0 1 1 2.7e-07 3.1e-06 18.2 1.0 4 129 27 195 24 197 0.73 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_3 - 114 HTH_19 PF12844.2 64 1.4e-18 57.7 0.1 1 1 1.9e-19 2.1e-18 57.0 0.1 2 61 5 64 4 66 0.96 # 1897 # 2238 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_12 - 203 HTH_19 PF12844.2 64 0.00014 12.8 0.2 1 1 2.6e-05 0.0003 11.7 0.2 14 36 177 199 171 202 0.91 # 8744 # 9352 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_3 - 114 Sigma70_r4_2 PF08281.7 54 4e-05 14.0 0.0 1 1 6.8e-06 7.8e-05 13.0 0.0 22 45 11 34 9 35 0.91 # 1897 # 2238 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_12 - 203 Sigma70_r4_2 PF08281.7 54 6.3e-05 13.3 0.7 1 2 0.093 1.1 -0.2 0.0 4 32 46 74 44 74 0.88 # 8744 # 9352 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_12 - 203 Sigma70_r4_2 PF08281.7 54 6.3e-05 13.3 0.7 2 2 4.9e-05 0.00056 10.3 0.2 14 44 164 193 163 194 0.91 # 8744 # 9352 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_16 - 198 Mga PF05043.8 87 2.3e-07 22.0 0.4 1 2 0.0074 0.17 3.1 0.1 24 52 104 132 74 137 0.83 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_16 - 198 Mga PF05043.8 87 2.3e-07 22.0 0.4 2 2 4.6e-07 1.1e-05 16.6 0.0 17 55 148 185 144 187 0.92 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_16 - 198 HTH_30 PF13556.1 59 7.2e-06 16.5 0.0 1 1 6.3e-07 1.5e-05 15.5 0.0 3 38 151 186 150 187 0.94 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_8 - 209 AAA_23 PF13476.1 202 8.3e-05 13.8 9.5 1 1 2.1e-05 0.00048 11.3 9.5 10 131 17 138 9 198 0.58 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_3 - 114 HTH_31 PF13560.1 64 9.6e-14 42.3 0.0 1 1 5.2e-15 1.2e-13 42.0 0.0 2 59 3 59 2 66 0.95 # 1897 # 2238 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_16 - 198 HTH_22 PF13309.1 64 4e-08 23.8 0.3 1 2 0.039 0.3 1.8 0.0 23 38 70 85 64 86 0.87 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_16 - 198 HTH_22 PF13309.1 64 4e-08 23.8 0.3 2 2 2.7e-07 2.1e-06 18.4 0.1 17 64 141 182 129 182 0.75 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_12 - 203 HTH_22 PF13309.1 64 9.4e-07 19.5 1.4 1 2 0.0027 0.021 5.6 0.2 3 41 109 147 107 149 0.93 # 8744 # 9352 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_12 - 203 HTH_22 PF13309.1 64 9.4e-07 19.5 1.4 2 2 2.9e-05 0.00022 11.9 0.0 43 61 176 194 172 195 0.94 # 8744 # 9352 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_1 - 248 HTH_22 PF13309.1 64 3.8e-05 14.3 0.1 1 1 3.7e-05 0.00028 11.5 0.0 43 64 2 23 1 23 0.91 # 291 # 1034 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 1_3 - 114 HTH_37 PF13744.1 80 2e-08 24.9 0.3 1 1 1.2e-09 2.7e-08 24.4 0.3 18 56 2 40 1 63 0.82 # 1897 # 2238 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_16 - 198 HTH_36 PF13730.1 55 7.7e-06 16.9 0.1 1 1 1.4e-06 1.6e-05 15.9 0.1 28 52 163 187 144 188 0.92 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_23 - 126 HTH_36 PF13730.1 55 8.4e-06 16.8 0.1 1 1 1.5e-06 1.7e-05 15.8 0.1 2 49 65 124 64 125 0.89 # 20335 # 20712 # -1 # ID=1_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.243 1_15 - 127 Penicillinase_R PF03965.11 115 8.8e-38 119.8 1.3 1 1 4.3e-39 9.9e-38 119.7 1.3 1 114 8 121 8 122 0.99 # 12420 # 12800 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.244 1_8 - 209 AAA_17 PF13207.1 121 6.5e-06 17.9 0.2 1 1 8e-07 1.8e-05 16.4 0.2 3 56 31 86 30 207 0.73 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_17 - 223 DUF1804 PF08822.6 165 8.2e-05 13.2 0.0 1 1 6.5e-06 0.00015 12.4 0.0 7 47 21 61 14 63 0.89 # 13629 # 14297 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_21 - 116 HTH_34 PF13601.1 80 8.3e-05 13.5 0.2 1 1 5.4e-06 0.00012 12.9 0.2 2 49 44 91 43 96 0.93 # 17447 # 17794 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.259 1_17 - 223 HTH_29 PF13551.1 112 6.1e-08 23.7 0.0 1 1 1.5e-08 1.2e-07 22.8 0.0 13 76 34 96 29 118 0.81 # 13629 # 14297 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_12 - 203 HTH_29 PF13551.1 112 9.2e-07 19.9 0.1 1 1 5e-07 3.9e-06 17.9 0.0 4 34 168 197 166 200 0.92 # 8744 # 9352 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_16 - 198 HTH_29 PF13551.1 112 4.6e-06 17.7 0.7 1 2 0.052 0.4 1.7 0.2 33 67 122 154 119 160 0.71 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_16 - 198 HTH_29 PF13551.1 112 4.6e-06 17.7 0.7 2 2 8.5e-06 6.5e-05 13.9 0.0 7 39 156 187 154 192 0.89 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_15 - 127 MarR PF01047.17 59 3.5e-09 27.2 0.1 1 1 5.3e-10 6.1e-09 26.4 0.1 1 54 8 65 8 65 0.97 # 12420 # 12800 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.244 1_16 - 198 MarR PF01047.17 59 1.1e-06 19.1 0.1 1 1 2.5e-07 2.8e-06 17.9 0.0 1 45 145 188 145 188 0.91 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_21 - 116 HTH_20 PF12840.2 61 1.4e-05 15.7 0.0 1 1 1.5e-06 1.8e-05 15.4 0.0 15 57 48 89 34 93 0.87 # 17447 # 17794 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.259 1_16 - 198 HTH_20 PF12840.2 61 0.00018 12.2 0.0 1 1 8.8e-05 0.001 9.8 0.0 15 50 152 186 149 189 0.90 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_21 - 116 HTH_5 PF01022.15 47 8.9e-18 54.6 1.6 1 1 6.8e-19 1.6e-17 53.9 1.6 1 45 41 86 41 88 0.95 # 17447 # 17794 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.259 1_16 - 198 Terminase_5 PF06056.7 58 0.00013 12.3 0.1 1 1 1.1e-05 0.00025 11.5 0.1 7 36 154 183 153 194 0.88 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_16 - 198 HTH_24 PF13412.1 48 5.3e-12 35.9 0.1 1 1 4.2e-13 9.7e-12 35.0 0.1 1 44 145 187 145 188 0.97 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_8 - 209 AAA_21 PF13304.1 303 5.6e-17 53.4 5.1 1 1 7.2e-16 1.7e-14 45.3 5.1 3 301 31 193 29 195 0.88 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_16 - 198 HTH_AsnC-type PF13404.1 42 5.2e-05 13.7 0.0 1 1 4.7e-06 0.00011 12.6 0.0 3 42 147 185 145 185 0.87 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_17 - 223 HTH_Tnp_Mu_2 PF09039.6 108 4e-05 14.2 0.0 1 1 3.3e-06 7.6e-05 13.3 0.0 30 102 77 148 50 155 0.82 # 13629 # 14297 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_16 - 198 HTH_IclR PF09339.5 52 8.9e-06 16.2 0.0 1 1 1.1e-06 2.4e-05 14.8 0.0 7 43 151 185 147 187 0.86 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_12 - 203 HTH_7 PF02796.10 45 6.5e-24 74.5 1.4 1 1 7.2e-25 8.3e-24 74.1 0.2 1 45 147 199 147 199 0.96 # 8744 # 9352 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_16 - 198 HTH_7 PF02796.10 45 1.2e-20 64.0 0.1 1 1 2.3e-21 2.7e-20 62.9 0.1 1 44 140 183 140 184 0.98 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_8 - 209 SbcCD_C PF13558.1 90 5.2e-06 17.2 0.0 1 1 3e-06 6.9e-05 13.6 0.0 11 88 110 174 102 176 0.81 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_16 - 198 HTH_DeoR PF08220.7 57 0.00013 12.4 0.0 1 1 4e-05 0.00031 11.2 0.0 17 41 163 187 148 189 0.85 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_15 - 127 HTH_DeoR PF08220.7 57 0.00019 11.9 0.3 1 1 0.0001 0.00079 9.9 0.1 8 46 18 60 14 62 0.76 # 12420 # 12800 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.244 1_1 - 248 HTH_DeoR PF08220.7 57 0.00022 11.7 2.0 1 1 4.5e-05 0.00034 11.0 0.0 16 33 3 20 2 30 0.84 # 291 # 1034 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 1_4 - 287 Rep_3 PF01051.16 222 6.8e-50 160.5 17.7 1 1 3.7e-51 8.5e-50 160.2 17.7 3 222 4 220 2 220 0.95 # 2325 # 3185 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.267 1_16 - 198 Phage_antitermQ PF06530.7 126 6.8e-05 13.3 0.0 1 2 0.028 0.65 0.4 0.0 52 94 58 100 38 112 0.82 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_16 - 198 Phage_antitermQ PF06530.7 126 6.8e-05 13.3 0.0 2 2 2.3e-05 0.00054 10.4 0.0 62 103 144 185 141 191 0.90 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_19 - 272 AAA PF00004.24 132 1.3e-06 19.5 0.1 1 2 0.00028 0.0065 7.5 0.0 3 14 32 43 31 58 0.89 # 15065 # 15880 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.298 1_19 - 272 AAA PF00004.24 132 1.3e-06 19.5 0.1 2 2 6.1e-05 0.0014 9.7 0.0 34 111 110 167 65 189 0.83 # 15065 # 15880 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.298 1_8 - 209 AAA_10 PF12846.2 304 3.8e-05 14.0 0.2 1 1 3e-06 7e-05 13.1 0.1 3 22 29 48 27 63 0.81 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_19 - 272 DEAD PF00270.24 169 0.00041 10.7 1.6 1 1 4.7e-05 0.0011 9.3 1.0 113 143 121 151 30 162 0.80 # 15065 # 15880 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.298 1_8 - 209 AAA_16 PF13191.1 185 4.1e-05 14.5 0.4 1 1 3e-06 6.8e-05 13.7 0.4 24 42 27 45 17 198 0.82 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_12 - 203 HTH_23 PF13384.1 50 1.5e-10 31.4 0.3 1 1 7.7e-11 3.5e-10 30.2 0.1 6 39 164 197 159 199 0.89 # 8744 # 9352 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_16 - 198 HTH_23 PF13384.1 50 4.7e-09 26.6 0.0 1 1 2.5e-09 1.2e-08 25.4 0.0 13 43 156 185 151 193 0.87 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_3 - 114 HTH_23 PF13384.1 50 5.6e-08 23.2 0.0 1 1 2e-08 9.1e-08 22.5 0.0 8 38 4 36 1 42 0.85 # 1897 # 2238 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_17 - 223 HTH_23 PF13384.1 50 1.6e-07 21.8 0.0 1 1 7.8e-08 3.6e-07 20.6 0.0 2 49 17 65 16 66 0.89 # 13629 # 14297 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_1 - 248 HTH_23 PF13384.1 50 4.1e-06 17.3 0.0 1 1 2.8e-06 1.3e-05 15.7 0.0 18 42 2 26 2 32 0.89 # 291 # 1034 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 1_3 - 114 Sigma70_ECF PF07638.6 185 0.00012 12.6 0.0 1 1 8.8e-06 0.0002 11.9 0.0 145 170 9 34 2 42 0.86 # 1897 # 2238 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_16 - 198 UPF0122 PF04297.9 101 2.3e-05 15.2 0.1 1 1 3e-06 6.9e-05 13.7 0.0 18 59 145 186 142 190 0.92 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_15 - 127 S-AdoMet_synt_M PF02772.11 120 0.00013 12.8 1.9 1 2 1.4e-05 0.00032 11.5 1.2 64 106 21 62 3 74 0.78 # 12420 # 12800 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.244 1_15 - 127 S-AdoMet_synt_M PF02772.11 120 0.00013 12.8 1.9 2 2 0.045 1 0.2 0.0 64 90 89 115 70 126 0.62 # 12420 # 12800 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.244 1_1 - 248 TIGR02168 TIGR02168 1181 0.0022 6.2 35.4 1 1 0.00012 0.0028 5.8 35.4 239 452 28 235 3 240 0.64 # 291 # 1034 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 1_16 - 198 HTH_11 PF08279.7 55 3.5e-09 27.1 0.0 1 1 1.5e-09 8.4e-09 25.9 0.0 4 41 151 186 147 189 0.83 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_1 - 248 HTH_11 PF08279.7 55 1.4e-07 22.0 0.9 1 1 7.8e-08 4.5e-07 20.4 0.1 17 40 3 26 2 31 0.93 # 291 # 1034 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 1_12 - 203 HTH_11 PF08279.7 55 1e-05 16.0 0.1 1 1 4.8e-06 2.8e-05 14.6 0.1 6 34 169 194 166 195 0.81 # 8744 # 9352 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_3 - 114 HTH_11 PF08279.7 55 7.3e-05 13.3 0.1 1 1 2.1e-05 0.00012 12.6 0.1 13 34 14 34 2 34 0.78 # 1897 # 2238 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_3 - 114 P22_Cro PF14549.1 60 7.4e-06 16.5 0.1 1 1 5.6e-07 1.3e-05 15.8 0.1 11 30 17 36 16 44 0.89 # 1897 # 2238 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_17 - 223 HTH_28 PF13518.1 52 1.4e-12 38.3 0.0 1 1 2.9e-12 1.7e-11 34.9 0.1 1 45 21 66 21 73 0.94 # 13629 # 14297 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_12 - 203 HTH_28 PF13518.1 52 1.5e-09 28.6 0.0 1 1 6.2e-10 3.5e-09 27.4 0.0 4 34 167 197 166 200 0.94 # 8744 # 9352 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_3 - 114 HTH_28 PF13518.1 52 2.8e-06 18.2 0.2 1 1 1.1e-06 6.4e-06 17.0 0.1 11 32 14 35 3 38 0.84 # 1897 # 2238 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_16 - 198 HTH_28 PF13518.1 52 9.5e-06 16.5 0.0 1 1 4.4e-06 2.5e-05 15.1 0.0 8 37 156 185 155 190 0.92 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_8 - 209 Dynamin_N PF00350.18 168 6.1e-05 13.7 2.5 1 1 8e-06 0.00018 12.2 2.5 2 30 31 59 31 196 0.69 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_16 - 198 HTH_Tnp_4 PF13613.1 53 1.7e-05 15.2 0.0 1 1 1.5e-06 3.5e-05 14.2 0.0 24 45 165 186 159 187 0.90 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_19 - 272 cobW PF02492.14 178 0.00027 11.2 0.8 1 1 1.8e-05 0.0004 10.7 0.1 113 171 94 156 65 162 0.77 # 15065 # 15880 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.298 1_8 - 209 MMR_HSR1 PF01926.18 116 2.3e-06 18.5 2.4 1 1 2.3e-07 5.2e-06 17.3 2.4 3 100 31 142 29 204 0.63 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_12 - 203 CENP-B_N PF04218.8 53 3e-09 27.1 3.7 1 2 0.00037 0.0086 6.4 0.3 13 35 117 139 115 142 0.85 # 8744 # 9352 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_12 - 203 CENP-B_N PF04218.8 53 3e-09 27.1 3.7 2 2 6.8e-09 1.6e-07 21.6 0.3 14 46 167 199 166 202 0.91 # 8744 # 9352 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_8 - 209 NTPase_1 PF03266.10 168 5.9e-05 13.6 0.4 1 2 0.0012 0.028 5.0 0.0 3 19 31 47 29 57 0.86 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 NTPase_1 PF03266.10 168 5.9e-05 13.6 0.4 2 2 0.00029 0.0066 7.0 0.2 74 136 128 192 104 207 0.74 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_16 - 198 GntR PF00392.16 64 0.0002 11.7 0.0 1 1 1.6e-05 0.00038 10.8 0.0 23 51 162 187 151 188 0.83 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_22 - 206 Virul_fac_BrkB PF03631.10 260 0.0043 7.2 24.4 1 2 3.2e-05 0.00075 9.7 8.5 166 235 11 79 1 81 0.84 # 17813 # 18430 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 1_22 - 206 Virul_fac_BrkB PF03631.10 260 0.0043 7.2 24.4 2 2 0.0021 0.049 3.7 8.0 115 180 135 191 107 193 0.63 # 17813 # 18430 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 1_1 - 248 Glu_synthase PF01645.12 368 0.0024 7.6 7.6 1 2 0.035 0.81 -0.8 0.7 15 60 48 92 23 103 0.60 # 291 # 1034 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 1_1 - 248 Glu_synthase PF01645.12 368 0.0024 7.6 7.6 2 2 1.6e-05 0.00037 10.2 3.2 10 71 99 159 87 163 0.82 # 291 # 1034 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 1_8 - 209 AAA_15 PF13175.1 415 5.1e-09 26.4 8.7 1 2 4.7e-06 0.00011 12.1 6.6 8 110 12 106 4 123 0.60 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 AAA_15 PF13175.1 415 5.1e-09 26.4 8.7 2 2 4.6e-07 1.1e-05 15.4 2.8 291 414 87 193 62 194 0.67 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 FeoB_N PF02421.13 156 6.7e-05 13.0 4.1 1 3 4.4e-05 0.001 9.2 0.0 3 24 30 51 28 56 0.89 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 FeoB_N PF02421.13 156 6.7e-05 13.0 4.1 2 3 0.095 2.2 -1.6 0.0 94 133 94 131 84 146 0.57 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 FeoB_N PF02421.13 156 6.7e-05 13.0 4.1 3 3 0.0016 0.038 4.1 1.0 86 131 162 207 131 208 0.77 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_18 - 277 rve_3 PF13683.1 67 1.1e-06 19.0 0.2 1 1 2.3e-07 5.4e-06 16.8 0.1 2 36 54 99 53 128 0.73 # 14242 # 15072 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.323 1_12 - 203 TetR_N PF00440.18 47 8.7e-05 13.0 0.1 1 1 2e-05 0.00023 11.7 0.0 18 35 177 194 173 195 0.92 # 8744 # 9352 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_16 - 198 TetR_N PF00440.18 47 0.00015 12.3 0.1 1 1 5.2e-05 0.0006 10.4 0.0 16 36 160 180 158 180 0.92 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_18 - 277 rve PF00665.21 120 1.6e-15 48.1 0.0 1 1 3.3e-16 3.8e-15 46.9 0.0 53 119 9 81 3 82 0.87 # 14242 # 15072 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.323 1_17 - 223 rve PF00665.21 120 7.3e-10 29.9 0.0 1 1 1.3e-10 1.4e-09 28.9 0.0 2 46 156 205 155 216 0.88 # 13629 # 14297 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_3 - 114 HTH_25 PF13413.1 62 4.5e-06 17.1 0.1 1 1 3.1e-07 7.1e-06 16.5 0.1 3 28 8 33 6 41 0.87 # 1897 # 2238 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_17 - 223 HTH_Tnp_1 PF01527.15 76 4.9e-06 17.4 0.0 1 1 1.1e-06 8.4e-06 16.6 0.0 10 55 20 66 14 95 0.78 # 13629 # 14297 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_12 - 203 HTH_Tnp_1 PF01527.15 76 1.5e-05 15.8 0.2 1 2 0.081 0.62 1.0 0.0 6 36 107 137 106 144 0.77 # 8744 # 9352 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_12 - 203 HTH_Tnp_1 PF01527.15 76 1.5e-05 15.8 0.2 2 2 2.4e-05 0.00018 12.3 0.0 15 42 168 194 164 197 0.88 # 8744 # 9352 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_1 - 248 HTH_Tnp_1 PF01527.15 76 8.1e-05 13.4 0.8 1 2 0.00025 0.0019 9.0 0.0 24 50 2 29 1 58 0.72 # 291 # 1034 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 1_1 - 248 HTH_Tnp_1 PF01527.15 76 8.1e-05 13.4 0.8 2 2 0.046 0.35 1.8 0.7 36 74 107 146 102 148 0.77 # 291 # 1034 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 1_3 - 114 Phage_terminase PF10668.4 60 0.0001 13.0 0.4 1 1 6.8e-06 0.00016 12.4 0.4 25 47 18 40 8 46 0.87 # 1897 # 2238 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_12 - 203 HTH_38 PF13936.1 44 9.6e-08 22.4 0.3 1 1 1.2e-08 9.6e-08 22.4 0.3 15 39 170 194 159 195 0.91 # 8744 # 9352 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_16 - 198 HTH_38 PF13936.1 44 5e-07 20.1 0.0 1 1 1.6e-07 1.2e-06 18.9 0.0 4 41 144 181 141 183 0.90 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_3 - 114 HTH_38 PF13936.1 44 3.9e-05 14.1 0.0 1 1 7.6e-06 5.8e-05 13.5 0.0 12 39 6 34 3 35 0.88 # 1897 # 2238 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_3 - 114 Sigma70_r4 PF04545.11 50 4.1e-06 17.0 0.0 1 1 1.1e-06 1.3e-05 15.4 0.0 15 41 10 36 5 38 0.87 # 1897 # 2238 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_12 - 203 Sigma70_r4 PF04545.11 50 7.1e-06 16.2 0.2 1 1 1.2e-06 1.4e-05 15.2 0.2 9 41 160 196 157 198 0.92 # 8744 # 9352 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_15 - 127 HTH_27 PF13463.1 68 0.00015 13.0 0.0 1 2 4e-05 0.00092 10.4 0.0 4 54 11 64 8 70 0.92 # 12420 # 12800 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.244 1_15 - 127 HTH_27 PF13463.1 68 0.00015 13.0 0.0 2 2 0.058 1.3 0.3 0.0 6 29 97 121 94 121 0.83 # 12420 # 12800 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.244 1_14 - 600 SprT-like PF10263.4 157 5.1e-05 13.8 0.0 1 1 5.4e-06 0.00012 12.6 0.0 7 71 159 220 154 223 0.79 # 10631 # 12430 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_12 - 203 HTH_Tnp_IS630 PF01710.11 120 7e-06 16.6 0.1 1 1 1.4e-06 1.7e-05 15.4 0.1 9 38 166 195 163 201 0.89 # 8744 # 9352 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_16 - 198 HTH_Tnp_IS630 PF01710.11 120 8.8e-05 13.0 0.0 1 1 1.6e-05 0.00018 12.1 0.0 17 46 159 188 144 196 0.79 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_22 - 206 Cad PF03596.8 191 1.9e-85 276.2 16.6 1 1 9.4e-87 2.2e-85 276.0 16.6 1 191 12 203 12 203 0.99 # 17813 # 18430 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 1_12 - 203 HTH_40 PF14493.1 91 6.7e-06 17.2 0.1 1 1 1.4e-06 1.6e-05 15.9 0.1 7 31 169 193 165 194 0.92 # 8744 # 9352 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_16 - 198 HTH_40 PF14493.1 91 2.1e-05 15.6 0.0 1 1 3.6e-06 4.1e-05 14.7 0.0 8 41 155 188 153 194 0.88 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_3 - 114 HTH_3 PF01381.17 55 9.1e-20 61.2 0.1 1 1 1.1e-20 1.2e-19 60.8 0.1 1 54 7 60 7 61 0.97 # 1897 # 2238 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_12 - 203 HTH_3 PF01381.17 55 6.3e-05 13.7 0.7 1 1 1.2e-05 0.00013 12.7 0.1 11 32 177 198 170 201 0.85 # 8744 # 9352 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_16 - 198 TrmB PF01978.14 68 2.7e-07 21.1 0.0 1 1 2.8e-08 6.5e-07 19.9 0.0 23 49 161 187 145 189 0.83 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_3 - 114 HTH_26 PF13443.1 63 3.1e-08 24.6 0.0 1 1 1.6e-09 3.8e-08 24.4 0.0 8 58 13 62 2 66 0.89 # 1897 # 2238 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_8 - 209 ABC_tran PF00005.22 137 2.2e-37 119.2 0.1 1 1 1.3e-38 3.1e-37 118.8 0.1 1 136 17 159 17 160 0.93 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_14 - 600 Peptidase_M48 PF01435.13 226 6.3e-05 13.4 0.1 1 1 6.2e-06 0.00014 12.2 0.1 63 129 186 249 126 286 0.76 # 10631 # 12430 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_12 - 203 HTH_8 PF02954.14 42 6.4e-05 13.4 0.0 1 1 8.9e-06 0.0002 11.8 0.0 17 37 174 194 169 196 0.89 # 8744 # 9352 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_8 - 209 SMC_N PF02463.14 220 7.5e-08 22.6 6.2 1 1 1.2e-08 2.7e-07 20.8 6.2 19 213 21 205 4 208 0.75 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_16 - 198 Trp_repressor PF01371.14 88 2.4e-05 15.1 0.6 1 2 0.059 1.4 -0.1 0.1 3 33 87 117 85 124 0.83 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_16 - 198 Trp_repressor PF01371.14 88 2.4e-05 15.1 0.6 2 2 6.4e-06 0.00015 12.6 0.0 39 80 150 191 144 196 0.89 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_8 - 209 AAA_29 PF13555.1 62 8.5e-08 22.6 0.1 1 1 6.5e-09 1.5e-07 21.8 0.1 13 40 18 44 12 48 0.84 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_23 - 126 RepA_N PF06970.6 76 8.7e-36 112.5 1.7 1 1 6e-37 1.4e-35 111.9 1.7 1 76 48 124 48 124 0.98 # 20335 # 20712 # -1 # ID=1_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.243 1_22 - 206 Sdh_cyt PF01127.17 121 0.00045 10.9 15.6 1 2 0.00026 0.006 7.3 1.9 34 120 12 117 2 118 0.58 # 17813 # 18430 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 1_22 - 206 Sdh_cyt PF01127.17 121 0.00045 10.9 15.6 2 2 0.001 0.023 5.4 6.2 33 78 144 189 129 192 0.52 # 17813 # 18430 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 1_17 - 223 LZ_Tnp_IS481 PF13011.1 85 9.2e-06 16.9 0.0 1 1 7.2e-07 1.7e-05 16.0 0.0 26 72 34 79 22 95 0.81 # 13629 # 14297 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_17 - 223 HTH_32 PF13565.1 77 4.2e-08 24.8 0.0 1 1 5.6e-09 6.5e-08 24.2 0.0 1 74 49 123 49 126 0.80 # 13629 # 14297 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_16 - 198 HTH_32 PF13565.1 77 1.8e-05 16.4 0.2 1 1 3.3e-06 3.8e-05 15.3 0.2 19 77 131 181 118 181 0.80 # 13064 # 13657 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_10 - 645 MgtE PF01769.11 135 0.019 6.1 20.1 1 2 0.00085 0.02 6.1 7.0 35 107 195 261 185 270 0.89 # 6028 # 7962 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.253 1_10 - 645 MgtE PF01769.11 135 0.019 6.1 20.1 2 2 0.0022 0.05 4.8 5.2 45 104 539 598 522 630 0.88 # 6028 # 7962 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.253 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/290cbe88-2462-491f-be74-d0a9e66375c4 # Target file: checkm_output/bins/pGCA_000144955.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000144955.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/290cbe88-2462-491f-be74-d0a9e66375c4 checkm_output/bins/pGCA_000144955.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:52:03 2021 # [ok]