# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_10 - 264 ArsA_ATPase PF02374.10 305 1.2e-10 31.9 0.1 1 1 9.3e-12 2.5e-10 30.9 0.1 3 137 3 134 1 162 0.71 # 7366 # 8157 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.273 1_18 - 185 MarR_2 PF12802.2 62 4e-05 14.4 0.0 1 1 3.9e-06 0.00011 13.0 0.0 12 41 152 179 142 183 0.89 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_10 - 264 YhjQ PF06564.7 244 6.6e-12 36.3 0.0 1 1 3.2e-13 8.6e-12 35.9 0.0 1 152 1 159 1 165 0.83 # 7366 # 8157 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.273 1_19 - 83 HTH_Crp_2 PF13545.1 76 6.8e-05 13.8 0.0 1 1 7.8e-06 0.00011 13.1 0.0 7 48 6 41 4 51 0.80 # 13685 # 13933 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.237 1_9 - 428 HTH_Crp_2 PF13545.1 76 7.8e-05 13.6 0.0 1 2 0.032 0.44 1.6 0.0 20 59 57 95 43 103 0.77 # 5953 # 7236 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.333 1_9 - 428 HTH_Crp_2 PF13545.1 76 7.8e-05 13.6 0.0 2 2 0.00015 0.002 9.0 0.0 21 53 168 200 155 210 0.86 # 5953 # 7236 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.333 1_18 - 185 HTH_17 PF12728.2 51 2.5e-05 15.6 0.0 1 1 5.2e-06 7e-05 14.2 0.0 5 21 163 179 160 182 0.85 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_9 - 428 HTH_17 PF12728.2 51 6e-05 14.4 0.0 1 2 0.0015 0.02 6.3 0.0 2 21 65 84 64 110 0.86 # 5953 # 7236 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.333 1_9 - 428 HTH_17 PF12728.2 51 6e-05 14.4 0.0 2 2 0.0029 0.039 5.4 0.0 7 30 181 202 176 221 0.72 # 5953 # 7236 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.333 1_19 - 83 HTH_19 PF12844.2 64 9.1e-14 42.4 1.2 1 1 3.9e-15 1e-13 42.2 1.2 1 63 10 73 10 74 0.96 # 13685 # 13933 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.237 1_18 - 185 Sigma70_r4_2 PF08281.7 54 1.1e-05 16.0 0.1 1 2 0.011 0.29 1.8 0.0 3 31 45 73 43 74 0.89 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_18 - 185 Sigma70_r4_2 PF08281.7 54 1.1e-05 16.0 0.1 2 2 7.4e-06 0.0002 11.9 0.0 26 44 159 177 151 179 0.87 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_18 - 185 Mga PF05043.8 87 1.7e-05 16.2 0.1 1 1 3.4e-06 9.1e-05 13.8 0.0 24 55 153 184 148 184 0.91 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_6 - 225 FUR PF01475.14 120 0.00011 13.2 2.3 1 2 8.3e-05 0.0022 9.0 0.2 24 62 26 62 20 81 0.77 # 4442 # 5116 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 225 FUR PF01475.14 120 0.00011 13.2 2.3 2 2 0.0041 0.11 3.5 0.1 12 51 144 185 138 203 0.86 # 4442 # 5116 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_19 - 83 HTH_31 PF13560.1 64 1.7e-07 22.5 0.0 1 1 7.2e-09 1.9e-07 22.3 0.0 6 57 13 64 8 71 0.92 # 13685 # 13933 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.237 1_18 - 185 HTH_22 PF13309.1 64 5e-05 14.1 0.2 1 2 0.096 2.6 -1.0 0.0 17 39 37 59 22 63 0.72 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_18 - 185 HTH_22 PF13309.1 64 5e-05 14.1 0.2 2 2 1.1e-05 0.00029 11.7 0.0 44 61 161 178 157 180 0.92 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_19 - 83 HTH_37 PF13744.1 80 7e-09 26.5 0.3 1 1 3e-10 8.1e-09 26.3 0.3 17 69 7 59 1 65 0.92 # 13685 # 13933 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.237 1_6 - 225 MULE PF10551.4 93 2.5e-05 15.5 0.0 1 1 2.1e-06 5.8e-05 14.4 0.0 18 76 91 146 52 160 0.85 # 4442 # 5116 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 225 HEM4 PF02602.10 231 0.00016 12.0 0.0 1 1 8.6e-06 0.00023 11.5 0.0 126 154 25 53 10 70 0.79 # 4442 # 5116 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_9 - 428 HTH_36 PF13730.1 55 3.3e-13 40.7 0.8 1 2 6.8e-09 1.8e-07 22.3 0.0 2 55 22 94 21 94 0.75 # 5953 # 7236 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.333 1_9 - 428 HTH_36 PF13730.1 55 3.3e-13 40.7 0.8 2 2 7.3e-07 2e-05 15.8 0.1 18 50 159 200 145 202 0.80 # 5953 # 7236 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.333 1_10 - 264 AAA_31 PF13614.1 157 5.4e-15 46.7 0.2 1 1 5.8e-16 1.6e-14 45.2 0.2 2 150 3 156 2 163 0.81 # 7366 # 8157 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.273 1_6 - 225 AAA_17 PF13207.1 121 1.7e-05 16.7 1.1 1 1 1.9e-06 2.5e-05 16.2 1.0 23 112 24 121 19 178 0.82 # 4442 # 5116 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_10 - 264 AAA_17 PF13207.1 121 0.00011 14.1 0.2 1 1 3.2e-05 0.00044 12.2 0.2 9 64 12 71 10 259 0.74 # 7366 # 8157 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.273 1_2 - 270 TIGR03695 TIGR03695 252 4.1e-13 40.0 0.1 1 1 3.1e-14 8.3e-13 39.0 0.1 3 104 27 130 25 136 0.84 # 1021 # 1830 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_18 - 185 HTH_29 PF13551.1 112 1.1e-06 19.8 0.2 1 2 0.013 0.35 2.2 0.0 40 70 124 155 118 162 0.67 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_18 - 185 HTH_29 PF13551.1 112 1.1e-06 19.8 0.2 2 2 6e-07 1.6e-05 16.1 0.0 7 37 155 184 149 184 0.83 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_18 - 185 HTH_5 PF01022.15 47 5.2e-05 14.0 0.0 1 1 2.2e-05 0.00059 10.6 0.0 8 34 152 178 146 178 0.80 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_18 - 185 HTH_24 PF13412.1 48 3.4e-06 17.5 0.1 1 1 4.8e-07 1.3e-05 15.6 0.0 11 36 153 178 152 179 0.92 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_18 - 185 HTH_AsnC-type PF13404.1 42 3.1e-05 14.6 0.0 1 1 2.4e-06 6.4e-05 13.6 0.0 14 36 156 178 153 181 0.87 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_6 - 225 DDE_Tnp_IS240 PF13610.1 140 5.2e-44 140.7 1.9 1 1 2.7e-45 7.4e-44 140.2 1.9 3 139 72 203 70 204 0.94 # 4442 # 5116 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_19 - 83 TIGR02980 TIGR02980 227 2.8e-05 14.6 0.0 1 1 1.4e-06 3.7e-05 14.2 0.0 193 223 20 50 11 54 0.90 # 13685 # 13933 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.237 1_18 - 185 HTH_IclR PF09339.5 52 7.7e-07 19.8 0.0 1 1 6.6e-08 1.8e-06 18.6 0.0 18 38 159 179 154 181 0.89 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_3 - 128 Antitoxin-MazE PF04014.13 47 6.5e-07 20.1 0.1 1 1 5.7e-08 1.5e-06 18.9 0.1 1 45 54 97 54 99 0.93 # 2287 # 2670 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.294 1_18 - 185 HTH_7 PF02796.10 45 1.3e-09 28.9 0.1 1 1 1.2e-10 3.2e-09 27.7 0.1 12 44 149 182 139 182 0.85 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_18 - 185 LacI PF00356.16 46 0.00011 12.9 0.1 1 1 1.3e-05 0.00035 11.3 0.0 4 18 164 178 163 181 0.90 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_18 - 185 Phage_AlpA PF05930.7 51 0.00011 13.0 0.0 1 1 8.4e-06 0.00023 12.0 0.0 7 23 163 179 159 182 0.86 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_18 - 185 HTH_23 PF13384.1 50 2.3e-08 24.7 0.0 1 1 3.5e-09 4.7e-08 23.7 0.0 20 41 162 183 146 184 0.86 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_6 - 225 HTH_23 PF13384.1 50 7.7e-05 13.4 0.8 1 1 5.7e-06 7.7e-05 13.4 0.8 28 41 41 54 40 69 0.93 # 4442 # 5116 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_18 - 185 UPF0122 PF04297.9 101 1.1e-05 16.5 0.4 1 1 1.4e-06 3.8e-05 14.8 0.0 23 52 148 178 143 182 0.82 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_18 - 185 HTH_6 PF01418.12 77 5.4e-05 14.0 0.0 1 2 0.078 2.1 -0.7 0.0 60 73 109 122 108 124 0.85 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_18 - 185 HTH_6 PF01418.12 77 5.4e-05 14.0 0.0 2 2 1.4e-05 0.00038 11.3 0.0 33 57 158 182 152 184 0.87 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_18 - 185 HTH_11 PF08279.7 55 1.8e-09 28.3 0.0 1 2 0.047 1.3 -0.1 0.0 35 50 19 35 13 38 0.82 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_18 - 185 HTH_11 PF08279.7 55 1.8e-09 28.3 0.0 2 2 5.2e-10 1.4e-08 25.4 0.0 7 34 152 178 147 179 0.88 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_6 - 225 Arg_repressor PF01316.16 70 0.0001 13.0 0.0 1 1 9.4e-06 0.00025 11.7 0.0 24 48 30 54 25 74 0.81 # 4442 # 5116 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_10 - 264 MipZ PF09140.6 261 2.8e-05 14.3 0.2 1 1 8.3e-06 0.00022 11.3 0.2 2 41 3 43 2 155 0.79 # 7366 # 8157 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.273 1_18 - 185 HTH_28 PF13518.1 52 1e-07 23.0 1.0 1 1 1.1e-08 1.5e-07 22.5 0.0 11 37 157 184 151 184 0.86 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_6 - 225 HTH_28 PF13518.1 52 3.9e-05 14.8 1.2 1 1 8e-06 0.00011 13.3 0.4 15 36 31 54 17 55 0.80 # 4442 # 5116 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_10 - 264 VirC1 PF07015.6 231 0.00011 12.3 0.1 1 1 1.2e-05 0.00031 10.9 0.0 1 36 1 37 1 51 0.68 # 7366 # 8157 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.273 1_10 - 264 Fer4_NifH PF00142.13 273 1.4e-05 15.5 0.0 1 1 1.1e-06 3.1e-05 14.3 0.0 8 50 10 53 3 79 0.79 # 7366 # 8157 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.273 1_18 - 185 CENP-B_N PF04218.8 53 3e-06 17.7 0.0 1 1 2.5e-07 6.8e-06 16.6 0.0 18 43 154 180 146 182 0.88 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_18 - 185 HTH_Tnp_ISL3 PF13542.1 52 4.1e-05 13.9 0.0 1 1 5.3e-06 7.1e-05 13.1 0.0 12 47 143 179 142 184 0.92 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_19 - 83 HTH_Tnp_ISL3 PF13542.1 52 7.6e-05 13.0 0.1 1 1 1.4e-05 0.00019 11.7 0.0 26 47 21 41 20 41 0.93 # 13685 # 13933 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.237 1_12 - 113 rve_3 PF13683.1 67 1.5e-09 28.4 0.1 1 1 2.9e-10 3.9e-09 27.1 0.1 1 67 31 95 31 95 0.91 # 8769 # 9107 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.324 1_16 - 185 rve_3 PF13683.1 67 4.7e-09 26.8 0.1 1 1 9.3e-10 1.3e-08 25.5 0.1 1 67 103 167 103 167 0.90 # 11875 # 12429 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.344 1_20 - 525 TetR_N PF00440.18 47 3e-05 14.7 0.0 1 1 5.6e-06 7.6e-05 13.4 0.0 17 37 402 422 396 425 0.90 # 14325 # 15899 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.306 1_18 - 185 TetR_N PF00440.18 47 4.8e-05 14.1 0.1 1 1 9.1e-06 0.00012 12.8 0.0 18 35 161 178 158 179 0.89 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_6 - 225 rve PF00665.21 120 1.4e-17 55.0 0.8 1 1 8.9e-18 8e-17 52.6 0.4 2 117 66 174 65 176 0.93 # 4442 # 5116 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_16 - 185 rve PF00665.21 120 4.1e-16 50.3 0.0 1 1 6.2e-17 5.6e-16 49.8 0.0 5 118 24 130 22 132 0.95 # 11875 # 12429 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.344 1_12 - 113 rve PF00665.21 120 6.7e-11 33.4 0.0 1 1 1e-11 9.2e-11 33.0 0.0 68 118 10 58 2 60 0.93 # 8769 # 9107 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.324 1_19 - 83 HTH_25 PF13413.1 62 1.7e-06 18.8 0.1 1 1 8.5e-08 2.3e-06 18.3 0.1 2 44 13 55 12 60 0.89 # 13685 # 13933 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.237 1_18 - 185 HTH_38 PF13936.1 44 2.9e-07 21.1 0.1 1 1 8.6e-08 1.2e-06 19.2 0.0 20 39 159 178 148 181 0.83 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_20 - 525 HTH_38 PF13936.1 44 3.8e-05 14.3 0.0 1 1 8.5e-06 0.00012 12.8 0.0 22 39 403 420 378 422 0.90 # 14325 # 15899 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.306 1_19 - 83 Sigma70_r4 PF04545.11 50 8.5e-07 19.4 0.0 1 1 9.6e-08 1.3e-06 18.8 0.0 16 47 17 48 7 51 0.90 # 13685 # 13933 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.237 1_18 - 185 Sigma70_r4 PF04545.11 50 1.7e-05 15.2 0.0 1 1 3.3e-06 4.5e-05 13.9 0.0 12 42 151 181 149 182 0.88 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_19 - 83 HTH_3 PF01381.17 55 3.5e-12 37.2 0.4 1 1 3.2e-13 4.3e-12 36.9 0.4 1 55 13 68 13 68 0.95 # 13685 # 13933 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.237 1_18 - 185 HTH_3 PF01381.17 55 1.6e-05 15.8 0.0 1 1 2.8e-06 3.7e-05 14.6 0.0 11 31 161 181 158 183 0.87 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_6 - 225 DDE_3 PF13358.1 146 1.9e-07 22.0 0.3 1 1 1.3e-08 3.5e-07 21.1 0.2 26 95 74 143 57 197 0.77 # 4442 # 5116 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 225 DDE_Tnp_IS66 PF03050.9 271 1.7e-07 21.7 4.0 1 2 1.6e-08 4.3e-07 20.4 1.3 7 98 12 99 7 135 0.71 # 4442 # 5116 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 225 DDE_Tnp_IS66 PF03050.9 271 1.7e-07 21.7 4.0 2 2 0.0075 0.2 1.8 0.1 243 264 163 184 155 190 0.81 # 4442 # 5116 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_18 - 185 TrmB PF01978.14 68 2.2e-06 18.4 0.4 1 1 2.4e-07 6.4e-06 17.0 0.1 10 42 146 179 144 182 0.87 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_10 - 264 CbiA PF01656.18 195 5.2e-29 92.1 0.3 1 1 2.4e-30 6.5e-29 91.7 0.3 1 193 4 225 4 227 0.80 # 7366 # 8157 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.273 1_19 - 83 HTH_26 PF13443.1 63 5.4e-10 30.5 0.2 1 1 5.2e-11 7e-10 30.1 0.2 2 62 13 73 12 74 0.91 # 13685 # 13933 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.237 1_18 - 185 HTH_26 PF13443.1 63 3e-05 15.3 0.0 1 1 6.4e-06 8.6e-05 13.8 0.0 11 32 160 181 154 184 0.86 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_9 - 428 RepA_N PF06970.6 76 6e-53 167.7 7.0 1 2 7.3e-29 2e-27 86.0 1.0 2 76 6 88 5 88 0.97 # 5953 # 7236 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.333 1_9 - 428 RepA_N PF06970.6 76 6e-53 167.7 7.0 2 2 1.9e-28 5.1e-27 84.7 0.6 2 76 124 199 123 199 0.99 # 5953 # 7236 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.333 1_6 - 225 HTH_32 PF13565.1 77 6.6e-07 21.2 0.2 1 2 7.1e-07 9.6e-06 17.5 0.2 49 76 26 50 15 51 0.87 # 4442 # 5116 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 225 HTH_32 PF13565.1 77 6.6e-07 21.2 0.2 2 2 0.08 1.1 1.3 0.0 31 63 139 171 90 183 0.74 # 4442 # 5116 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_18 - 185 HTH_32 PF13565.1 77 1.1e-06 20.4 0.1 1 1 4.5e-07 6.1e-06 18.1 0.0 13 76 124 179 118 179 0.78 # 13118 # 13672 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3be443d1-bfeb-4ddf-aefe-2961c590a9f0 # Target file: checkm_output/bins/pGCA_000024585.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000024585.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3be443d1-bfeb-4ddf-aefe-2961c590a9f0 checkm_output/bins/pGCA_000024585.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:51:57 2021 # [ok]