# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 5_3 - 159 RepL PF05732.6 165 2.6e-72 233.3 4.8 1 1 6.2e-74 3e-72 233.1 4.8 1 148 1 148 1 156 0.98 # 1810 # 2286 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_24 - 359 DUF204 PF02659.10 67 3.5e-05 15.8 0.9 1 1 1.4e-06 6.7e-05 14.9 0.9 5 50 4 51 4 58 0.78 # 20225 # 21301 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.391 1_26 - 671 DUF258 PF03193.11 161 2.5e-05 15.4 1.2 1 2 0.027 1.3 0.0 0.1 70 119 205 254 194 259 0.81 # 22611 # 24623 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_26 - 671 DUF258 PF03193.11 161 2.5e-05 15.4 1.2 2 2 1.9e-06 9e-05 13.6 0.6 32 56 255 278 232 357 0.74 # 22611 # 24623 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_8 - 575 Peptidase_MA_2 PF13485.1 128 0.00015 13.7 0.0 1 1 6.6e-06 0.00032 12.6 0.0 2 40 193 230 192 273 0.84 # 5023 # 6747 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_26 - 671 AAA_18 PF13238.1 129 0.00019 13.7 2.0 1 2 3.7e-05 0.0018 10.5 1.1 2 91 261 398 261 402 0.63 # 22611 # 24623 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_26 - 671 AAA_18 PF13238.1 129 0.00019 13.7 2.0 2 2 0.05 2.4 0.4 0.0 43 90 402 452 383 469 0.61 # 22611 # 24623 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 5_2 - 245 Methyltransf_11 PF08241.7 95 2.7e-06 19.7 0.0 1 1 1.1e-07 5.3e-06 18.8 0.0 2 60 36 94 35 99 0.91 # 368 # 1102 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 2_3 - 1025 tRNA-synt_1 PF00133.17 601 1.3e-242 797.9 4.6 1 1 4.6e-244 2.2e-242 797.1 4.6 2 601 12 625 11 625 0.99 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_18 - 131 tRNA_anti-codon PF01336.20 75 1.1e-05 17.2 0.1 1 1 3.4e-07 1.6e-05 16.6 0.1 23 65 39 81 9 99 0.82 # 14091 # 14483 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.288 5_3 - 159 HTH_Crp_2 PF13545.1 76 1e-06 20.4 0.2 1 1 3.4e-08 1.6e-06 19.7 0.2 30 67 78 115 60 122 0.88 # 1810 # 2286 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 5_2 - 245 Methyltransf_4 PF02390.12 197 7.9e-06 16.9 1.8 1 2 1.7e-07 8.3e-06 16.8 0.3 20 97 31 101 4 104 0.77 # 368 # 1102 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 5_2 - 245 Methyltransf_4 PF02390.12 197 7.9e-06 16.9 1.8 2 2 0.089 4.3 -1.8 0.1 136 159 187 207 166 229 0.63 # 368 # 1102 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 1_12 - 186 HTH_17 PF12728.2 51 1.2e-05 17.5 1.0 1 1 1.9e-06 4.5e-05 15.6 0.0 2 24 160 182 159 184 0.92 # 9761 # 10318 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.312 2_1 - 116 HTH_17 PF12728.2 51 0.00097 11.3 5.2 1 1 4.6e-05 0.0011 11.1 2.3 12 41 41 78 38 82 0.74 # 3 # 350 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_26 - 671 AAA_22 PF13401.1 131 0.0001 14.3 0.0 1 2 2.8e-05 0.0014 10.7 0.0 7 34 260 286 254 398 0.82 # 22611 # 24623 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_26 - 671 AAA_22 PF13401.1 131 0.0001 14.3 0.0 2 2 0.065 3.1 -0.2 0.0 81 101 493 516 470 554 0.76 # 22611 # 24623 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_1 - 87 HTH_19 PF12844.2 64 1.2e-10 33.2 0.0 1 1 3.2e-12 1.5e-10 32.9 0.0 4 55 17 69 16 78 0.91 # 272 # 532 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 2_3 - 1025 tRNA-synt_1e PF01406.14 301 8.9e-08 23.4 0.0 1 2 0.019 0.92 0.3 0.0 9 48 34 73 27 75 0.83 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_3 - 1025 tRNA-synt_1e PF01406.14 301 8.9e-08 23.4 0.0 2 2 2.7e-08 1.3e-06 19.5 0.0 242 299 573 632 556 634 0.75 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_26 - 671 FtsK_SpoIIIE PF01580.13 205 0.00013 13.3 0.0 1 1 5.8e-06 0.00028 12.2 0.0 35 78 249 293 229 299 0.78 # 22611 # 24623 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_12 - 186 Sigma70_r4_2 PF08281.7 54 0.0001 13.6 0.1 1 1 6.7e-06 0.00032 12.1 0.0 21 45 154 178 153 184 0.88 # 9761 # 10318 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.312 1_12 - 186 Mga PF05043.8 87 7.7e-06 18.1 0.1 1 1 4.6e-07 2.2e-05 16.6 0.0 21 56 150 185 111 185 0.90 # 9761 # 10318 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.312 5_2 - 245 Methyltransf_31 PF13847.1 152 8.8e-06 17.2 3.0 1 1 2.9e-07 1.4e-05 16.6 2.6 2 76 29 98 28 220 0.73 # 368 # 1102 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 1_6 - 308 UPF0081 PF03652.10 135 0.0004 12.4 0.8 1 1 2.1e-05 0.001 11.1 0.0 38 95 70 127 56 139 0.77 # 2984 # 3907 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.268 5_3 - 159 FUR PF01475.14 120 1.3e-05 17.0 0.1 1 2 0.0067 0.32 2.8 0.0 78 102 12 36 2 50 0.71 # 1810 # 2286 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 5_3 - 159 FUR PF01475.14 120 1.3e-05 17.0 0.1 2 2 9e-06 0.00043 12.1 0.1 12 60 59 108 53 111 0.76 # 1810 # 2286 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_22 - 701 TIGR00615 TIGR00615 196 1.1e-06 19.8 0.1 1 1 5.8e-08 2.8e-06 18.5 0.1 123 171 89 138 80 156 0.86 # 17612 # 19714 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 1_18 - 131 tRNA_anti_2 PF13742.1 99 0.00025 12.8 0.0 1 1 6.8e-06 0.00033 12.4 0.0 37 87 23 79 9 88 0.79 # 14091 # 14483 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.288 4_1 - 326 Ribosomal_L11 PF00298.14 69 0.00036 12.6 0.9 1 1 2e-05 0.00094 11.2 0.1 16 43 17 45 10 57 0.90 # 1 # 978 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.298 1_1 - 87 HTH_31 PF13560.1 64 1e-09 30.4 0.0 1 1 2.5e-11 1.2e-09 30.2 0.0 7 57 18 68 15 82 0.91 # 272 # 532 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_12 - 186 HTH_22 PF13309.1 64 2.8e-06 19.0 0.4 1 1 4.2e-07 2e-05 16.2 0.4 23 64 144 181 122 181 0.77 # 9761 # 10318 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.312 1_20 - 547 T4SS-DNA_transf PF02534.9 469 6.4e-149 488.3 4.4 1 1 1.3e-150 6.4e-149 488.3 4.4 3 468 3 462 1 463 0.97 # 15495 # 17135 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.298 1_22 - 701 Toprim_Crpt PF13342.1 62 3.9e-18 56.8 18.0 1 3 0.0066 0.32 2.6 0.5 31 58 216 242 211 250 0.70 # 17612 # 19714 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 1_22 - 701 Toprim_Crpt PF13342.1 62 3.9e-18 56.8 18.0 2 3 0.0019 0.093 4.4 0.3 11 37 428 456 423 460 0.84 # 17612 # 19714 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 1_22 - 701 Toprim_Crpt PF13342.1 62 3.9e-18 56.8 18.0 3 3 1.1e-19 5.2e-18 56.4 5.3 1 61 639 700 639 700 0.98 # 17612 # 19714 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 1_18 - 131 SSB PF00436.20 104 1.9e-25 80.7 0.1 1 1 5.1e-27 2.5e-25 80.3 0.1 1 87 2 82 2 94 0.93 # 14091 # 14483 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.288 1_16 - 225 MULE PF10551.4 93 1.5e-05 17.0 0.0 1 1 2e-06 3.3e-05 16.0 0.0 19 77 92 147 63 161 0.84 # 13155 # 13829 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 6_1 - 150 MULE PF10551.4 93 7.4e-05 14.8 0.0 1 1 7.1e-06 0.00011 14.2 0.0 19 77 17 72 3 87 0.84 # 59 # 508 # -1 # ID=6_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.349 2_4 - 225 MULE PF10551.4 93 0.00011 14.2 0.0 1 1 1.5e-05 0.00024 13.2 0.0 19 76 92 146 63 161 0.84 # 4231 # 4905 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.341 2_1 - 116 HEM4 PF02602.10 231 0.00027 12.0 0.0 1 1 6.8e-06 0.00033 11.8 0.0 124 155 23 54 8 71 0.78 # 3 # 350 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 2_3 - 1025 tRNA-synt_1_2 PF13603.1 185 6.5e-05 14.1 0.0 1 1 4.4e-06 0.00021 12.5 0.0 103 144 297 338 199 368 0.71 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_12 - 186 HTH_36 PF13730.1 55 5.6e-05 15.2 0.0 1 1 6.5e-06 0.00016 13.7 0.0 28 50 162 184 99 185 0.81 # 9761 # 10318 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.312 5_3 - 159 HTH_36 PF13730.1 55 0.00026 13.0 0.0 1 1 2e-05 0.00048 12.2 0.0 26 54 77 105 61 106 0.84 # 1810 # 2286 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 2_3 - 1025 PhnA_Zn_Ribbon PF08274.7 30 0.00019 13.1 2.6 1 2 0.00027 0.013 7.2 0.4 19 29 451 461 450 462 0.90 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_3 - 1025 PhnA_Zn_Ribbon PF08274.7 30 0.00019 13.1 2.6 2 2 0.0012 0.06 5.1 0.1 13 26 486 499 484 500 0.88 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_24 - 359 T2SF PF00482.18 124 0.0017 10.2 5.1 1 1 7e-05 0.0033 9.2 5.1 92 123 12 43 10 44 0.93 # 20225 # 21301 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.391 5_2 - 245 RrnaAD PF00398.15 262 1.2e-75 245.7 5.1 1 1 2.8e-77 1.3e-75 245.6 5.1 1 262 1 244 1 244 0.97 # 368 # 1102 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 5_2 - 245 MTS PF05175.9 170 1.5e-05 16.3 0.0 1 1 4.8e-07 2.3e-05 15.7 0.0 25 113 24 109 14 125 0.83 # 368 # 1102 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 2_4 - 225 AAA_17 PF13207.1 121 2.5e-06 20.2 1.2 1 1 2.6e-07 4.1e-06 19.5 1.2 23 113 24 122 21 206 0.85 # 4231 # 4905 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.341 1_16 - 225 AAA_17 PF13207.1 121 3.3e-06 19.8 1.4 1 1 3.1e-07 4.9e-06 19.3 1.4 23 113 24 122 20 206 0.85 # 13155 # 13829 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 2_1 - 116 AAA_17 PF13207.1 121 7.2e-05 15.5 0.5 1 1 5.3e-06 8.5e-05 15.3 0.5 23 102 24 110 17 116 0.79 # 3 # 350 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 2_3 - 1025 tRNA-synt_1g PF09334.6 391 1.1e-25 81.9 7.9 1 4 3.1e-12 1.5e-10 32.1 0.2 10 135 44 188 41 199 0.75 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_3 - 1025 tRNA-synt_1g PF09334.6 391 1.1e-25 81.9 7.9 2 4 0.03 1.4 -0.8 0.0 47 118 303 374 299 379 0.90 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_3 - 1025 tRNA-synt_1g PF09334.6 391 1.1e-25 81.9 7.9 3 4 2.1e-05 0.00099 9.6 0.2 164 238 377 450 364 461 0.80 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_3 - 1025 tRNA-synt_1g PF09334.6 391 1.1e-25 81.9 7.9 4 4 1e-14 4.8e-13 40.3 0.3 244 387 508 644 497 646 0.75 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 5_2 - 245 DOT1 PF08123.8 205 1.4e-05 16.3 1.2 1 2 1.8e-06 8.9e-05 13.7 0.0 29 91 17 77 13 117 0.83 # 368 # 1102 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 5_2 - 245 DOT1 PF08123.8 205 1.4e-05 16.3 1.2 2 2 0.016 0.75 0.9 0.6 78 133 180 229 169 236 0.57 # 368 # 1102 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 2_3 - 1025 tRNA-synt_1f PF01921.13 360 8.8e-09 26.3 0.0 1 2 0.013 0.64 0.4 0.0 8 59 18 70 14 82 0.79 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_3 - 1025 tRNA-synt_1f PF01921.13 360 8.8e-09 26.3 0.0 2 2 2.2e-09 1e-07 22.7 0.0 273 335 576 638 539 668 0.72 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_12 - 186 HTH_29 PF13551.1 112 5e-06 18.6 0.2 1 2 0.014 0.69 2.0 0.0 37 72 124 157 117 163 0.68 # 9761 # 10318 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.312 1_12 - 186 HTH_29 PF13551.1 112 5e-06 18.6 0.2 2 2 9e-07 4.3e-05 15.6 0.0 9 37 156 184 150 185 0.84 # 9761 # 10318 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.312 5_3 - 159 MarR PF01047.17 59 7.5e-05 14.3 0.3 1 1 2.7e-06 0.00013 13.6 0.3 19 50 78 109 64 111 0.86 # 1810 # 2286 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 5_2 - 245 Methyltransf_12 PF08242.7 99 0.00034 13.0 0.2 1 1 1.9e-05 0.00094 11.6 0.0 2 56 36 88 35 114 0.83 # 368 # 1102 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 5_3 - 159 HTH_20 PF12840.2 61 3.6e-05 15.5 0.0 1 1 1.2e-06 5.7e-05 14.8 0.0 25 56 77 108 65 111 0.93 # 1810 # 2286 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 5_3 - 159 HTH_24 PF13412.1 48 1.5e-07 22.7 1.5 1 2 0.012 0.28 2.6 0.0 5 21 57 73 55 77 0.89 # 1810 # 2286 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 5_3 - 159 HTH_24 PF13412.1 48 1.5e-07 22.7 1.5 2 2 8.3e-08 2e-06 19.1 0.4 18 48 77 107 76 107 0.96 # 1810 # 2286 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_12 - 186 HTH_24 PF13412.1 48 5.6e-06 17.6 0.0 1 1 5.5e-07 1.3e-05 16.4 0.0 10 42 152 184 151 185 0.88 # 9761 # 10318 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.312 2_4 - 225 DDE_Tnp_IS240 PF13610.1 140 1.2e-44 143.5 2.7 1 1 1.4e-45 1.7e-44 143.1 2.7 3 139 72 203 70 204 0.95 # 4231 # 4905 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.341 1_16 - 225 DDE_Tnp_IS240 PF13610.1 140 2.5e-44 142.5 2.6 1 1 2.9e-45 3.5e-44 142.0 2.6 3 139 72 203 70 204 0.95 # 13155 # 13829 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 6_1 - 150 DDE_Tnp_IS240 PF13610.1 140 5.9e-42 134.8 1.7 1 1 5.7e-43 6.9e-42 134.6 1.7 7 139 1 128 1 129 0.95 # 59 # 508 # -1 # ID=6_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.349 2_1 - 116 DDE_Tnp_IS240 PF13610.1 140 1.6e-21 68.7 1.6 1 1 2.1e-22 2.5e-21 68.0 1.6 3 47 72 116 70 116 0.98 # 3 # 350 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_12 - 186 HTH_10 PF04967.7 53 7.5e-05 14.2 0.0 1 1 3.2e-06 0.00015 13.2 0.0 22 46 158 182 155 185 0.90 # 9761 # 10318 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.312 1_12 - 186 HTH_7 PF02796.10 45 1.1e-10 33.2 0.5 1 1 5e-12 2.4e-10 32.1 0.5 7 43 145 181 139 182 0.86 # 9761 # 10318 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.312 1_12 - 186 LacI PF00356.16 46 0.00021 12.8 0.0 1 1 9.4e-06 0.00045 11.7 0.0 3 21 163 181 161 185 0.91 # 9761 # 10318 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.312 1_26 - 671 AAA_14 PF13173.1 128 0.0022 9.8 11.0 1 3 8.7e-05 0.0042 8.9 0.8 2 40 257 294 256 402 0.78 # 22611 # 24623 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_26 - 671 AAA_14 PF13173.1 128 0.0022 9.8 11.0 2 3 0.003 0.15 3.9 0.9 16 91 450 531 446 554 0.66 # 22611 # 24623 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_26 - 671 AAA_14 PF13173.1 128 0.0022 9.8 11.0 3 3 0.046 2.2 0.1 0.0 28 57 608 636 592 653 0.73 # 22611 # 24623 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_26 - 671 AAA_10 PF12846.2 304 9.6e-57 184.5 2.4 1 1 7.5e-58 1.8e-56 183.6 2.4 1 301 257 584 257 586 0.91 # 22611 # 24623 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_20 - 547 AAA_10 PF12846.2 304 4.1e-09 28.1 0.1 1 1 5.3e-10 1.3e-08 26.5 0.1 1 300 31 368 31 371 0.69 # 15495 # 17135 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.298 1_26 - 671 AAA_16 PF13191.1 185 6.2e-05 14.9 0.0 1 1 1.2e-05 0.00057 11.8 0.0 25 52 258 293 244 532 0.74 # 22611 # 24623 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_12 - 186 HTH_23 PF13384.1 50 2.1e-09 28.8 0.0 1 1 4.6e-10 4.4e-09 27.7 0.0 10 42 151 184 143 185 0.82 # 9761 # 10318 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.312 2_4 - 225 HTH_23 PF13384.1 50 9.6e-06 17.1 0.8 1 1 1.9e-05 0.00018 13.0 0.1 28 41 41 54 40 57 0.92 # 4231 # 4905 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.341 2_1 - 116 HTH_23 PF13384.1 50 1.1e-05 17.0 4.7 1 2 0.09 0.87 1.4 0.0 18 27 26 35 17 38 0.81 # 3 # 350 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 2_1 - 116 HTH_23 PF13384.1 50 1.1e-05 17.0 4.7 2 2 6e-06 5.8e-05 14.6 0.9 28 41 41 54 40 70 0.93 # 3 # 350 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_16 - 225 HTH_23 PF13384.1 50 1.2e-05 16.8 1.2 1 1 1.9e-05 0.00018 13.0 0.1 28 41 41 54 40 57 0.92 # 13155 # 13829 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 5_3 - 159 HTH_23 PF13384.1 50 0.00031 12.3 0.0 1 1 6.5e-05 0.00062 11.4 0.0 19 45 78 103 68 108 0.88 # 1810 # 2286 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_4 - 78 Fun_ATP-synt_8 PF05933.8 48 5.5e-05 15.1 5.4 1 2 1.1e-06 5.5e-05 15.1 5.4 7 40 22 55 20 57 0.97 # 2171 # 2404 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.248 1_4 - 78 Fun_ATP-synt_8 PF05933.8 48 5.5e-05 15.1 5.4 2 2 0.073 3.5 -0.3 1.4 16 26 60 70 56 74 0.52 # 2171 # 2404 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.248 1_12 - 186 UPF0122 PF04297.9 101 1.4e-05 17.0 0.6 1 1 6.5e-07 3.1e-05 15.9 0.2 22 56 147 182 141 185 0.82 # 9761 # 10318 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.312 1_8 - 575 DUF955 PF06114.8 122 3.3e-05 15.5 0.1 1 1 2.5e-06 0.00012 13.7 0.1 21 80 196 252 177 258 0.81 # 5023 # 6747 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_22 - 701 TIGR01051 TIGR01051 632 6.2e-62 201.9 15.6 1 1 3.6e-63 1.7e-61 200.4 15.6 26 620 46 635 41 648 0.80 # 17612 # 19714 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 1_12 - 186 HTH_11 PF08279.7 55 2.3e-08 25.5 0.0 1 1 2.4e-09 5.8e-08 24.2 0.0 6 35 151 179 146 185 0.86 # 9761 # 10318 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.312 5_3 - 159 HTH_11 PF08279.7 55 0.00017 13.1 0.2 1 1 1.3e-05 0.00032 12.2 0.2 16 43 77 104 61 112 0.82 # 1810 # 2286 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_6 - 308 DUF2268 PF10026.4 195 0.00015 13.0 2.8 1 2 4.3e-05 0.0021 9.3 0.5 103 144 146 187 143 192 0.91 # 2984 # 3907 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.268 1_6 - 308 DUF2268 PF10026.4 195 0.00015 13.0 2.8 2 2 0.0026 0.13 3.5 0.1 100 148 211 257 207 285 0.84 # 2984 # 3907 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.268 1_20 - 547 TrwB_AAD_bind PF10412.4 386 2.1e-25 80.9 0.0 1 2 1.2e-05 0.00028 11.4 0.0 12 121 28 144 23 171 0.79 # 15495 # 17135 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.298 1_20 - 547 TrwB_AAD_bind PF10412.4 386 2.1e-25 80.9 0.0 2 2 1.3e-22 3.1e-21 67.2 0.0 219 377 260 424 207 431 0.86 # 15495 # 17135 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.298 1_26 - 671 TrwB_AAD_bind PF10412.4 386 1.8e-09 28.5 1.0 1 2 9.5e-07 2.3e-05 15.0 0.0 10 61 252 305 244 356 0.78 # 22611 # 24623 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_26 - 671 TrwB_AAD_bind PF10412.4 386 1.8e-09 28.5 1.0 2 2 1.7e-05 0.00041 10.8 0.0 237 316 495 577 480 603 0.75 # 22611 # 24623 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_12 - 186 HTH_28 PF13518.1 52 1.4e-07 23.3 0.1 1 1 2.7e-08 2.6e-07 22.5 0.1 3 37 148 184 146 185 0.82 # 9761 # 10318 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.312 5_3 - 159 HTH_28 PF13518.1 52 4.4e-05 15.4 0.0 1 1 1.3e-05 0.00012 14.0 0.0 1 41 56 105 56 111 0.82 # 1810 # 2286 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_16 - 225 HTH_28 PF13518.1 52 5.2e-05 15.2 0.4 1 1 2.5e-05 0.00024 13.0 0.4 15 36 31 54 17 55 0.80 # 13155 # 13829 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 2_4 - 225 HTH_28 PF13518.1 52 5.3e-05 15.1 0.4 1 1 2.5e-05 0.00024 13.0 0.4 15 36 31 54 17 55 0.80 # 4231 # 4905 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.341 2_1 - 116 HTH_28 PF13518.1 52 5.6e-05 15.0 0.3 1 1 2.6e-05 0.00025 12.9 0.3 23 36 41 54 17 55 0.91 # 3 # 350 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_29 - 106 Colicin_V PF02674.11 146 4.4e-05 15.2 1.8 1 1 1.2e-06 5.7e-05 14.9 1.8 53 123 23 104 5 105 0.75 # 25781 # 26098 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.358 5_2 - 245 Methyltransf_26 PF13659.1 117 6.9e-09 27.7 0.0 1 1 1.9e-10 9.2e-09 27.3 0.0 2 81 32 105 31 148 0.89 # 368 # 1102 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 2_1 - 116 HTH_Tnp_4 PF13613.1 53 2.4e-05 15.8 0.4 1 1 6.3e-06 0.0001 13.8 0.4 30 49 41 60 17 63 0.81 # 3 # 350 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 2_4 - 225 HTH_Tnp_4 PF13613.1 53 0.00022 12.7 0.3 1 1 4.6e-05 0.00074 11.0 0.3 30 49 41 60 18 63 0.84 # 4231 # 4905 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.341 1_16 - 225 HTH_Tnp_4 PF13613.1 53 0.00022 12.7 0.3 1 1 4.6e-05 0.00074 11.0 0.3 30 49 41 60 18 63 0.84 # 13155 # 13829 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 5_2 - 245 PCMT PF01135.14 210 1.7e-06 19.6 0.0 1 1 1e-07 5e-06 18.0 0.0 53 126 10 80 3 86 0.86 # 368 # 1102 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 1_12 - 186 CENP-B_N PF04218.8 53 2.3e-05 15.7 0.2 1 1 9.4e-07 4.5e-05 14.8 0.2 9 44 144 181 143 185 0.92 # 9761 # 10318 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.312 5_3 - 159 GntR PF00392.16 64 0.00013 13.4 0.0 1 1 5.4e-06 0.00026 12.4 0.0 17 59 69 111 57 112 0.87 # 1810 # 2286 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 2_3 - 1025 TIGR00422 TIGR00422 863 2.4e-140 460.6 24.0 1 3 1.9e-41 9.3e-40 127.8 1.3 5 237 5 238 1 265 0.92 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_3 - 1025 TIGR00422 TIGR00422 863 2.4e-140 460.6 24.0 2 3 3.2e-106 1.5e-104 342.1 8.8 256 841 294 897 287 915 0.91 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_3 - 1025 TIGR00422 TIGR00422 863 2.4e-140 460.6 24.0 3 3 0.0077 0.37 0.1 0.5 731 791 948 1006 938 1022 0.80 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_12 - 186 HTH_Tnp_ISL3 PF13542.1 52 7.4e-05 13.8 0.0 1 1 3.8e-06 0.00018 12.6 0.0 26 51 159 183 154 184 0.89 # 9761 # 10318 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.312 1_22 - 701 Octopine_DH PF02317.12 152 0.00036 12.1 1.2 1 1 2.7e-05 0.0013 10.3 0.3 52 118 271 335 231 353 0.82 # 17612 # 19714 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 1_26 - 671 DUF87 PF01935.12 229 2.1e-11 35.9 5.0 1 2 0.01 0.5 1.9 0.4 121 191 103 185 53 197 0.66 # 22611 # 24623 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_26 - 671 DUF87 PF01935.12 229 2.1e-11 35.9 5.0 2 2 4.4e-13 2.1e-11 35.9 5.0 19 209 253 454 237 485 0.68 # 22611 # 24623 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 2_3 - 1025 Zn-ribbon_8 PF09723.5 42 0.0003 12.6 0.3 1 1 4.5e-05 0.0022 9.9 0.0 14 40 480 505 478 506 0.89 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_4 - 225 rve PF00665.21 120 1.8e-18 58.7 0.9 1 1 4e-19 4.8e-18 57.3 0.4 2 117 66 174 65 176 0.93 # 4231 # 4905 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.341 1_16 - 225 rve PF00665.21 120 1.1e-17 56.2 0.9 1 1 2.4e-18 2.9e-17 54.8 0.3 2 117 66 174 65 176 0.93 # 13155 # 13829 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 6_1 - 150 rve PF00665.21 120 4.2e-15 47.8 0.1 1 1 4.7e-16 5.7e-15 47.4 0.1 12 117 1 99 1 101 0.94 # 59 # 508 # -1 # ID=6_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.349 2_1 - 116 rve PF00665.21 120 4.7e-07 21.9 0.3 1 1 1.4e-07 1.7e-06 20.1 0.1 2 52 66 113 65 116 0.84 # 3 # 350 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 2_4 - 225 HTH_Tnp_1 PF01527.15 76 0.00047 12.0 3.3 1 1 4e-05 0.00097 11.0 0.8 24 47 29 54 5 77 0.79 # 4231 # 4905 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.341 1_16 - 225 HTH_Tnp_1 PF01527.15 76 0.0005 11.9 3.1 1 1 2.7e-05 0.00066 11.6 0.2 24 47 29 54 5 69 0.77 # 13155 # 13829 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_12 - 186 HTH_38 PF13936.1 44 2.6e-07 22.0 0.1 1 1 1.3e-08 6.1e-07 20.9 0.1 8 42 146 181 141 182 0.85 # 9761 # 10318 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.312 5_2 - 245 Methyltransf_23 PF13489.1 161 2.4e-05 15.9 0.0 1 1 1.4e-06 6.5e-05 14.6 0.0 11 67 17 78 8 131 0.73 # 368 # 1102 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 1_12 - 186 Sigma70_r4 PF04545.11 50 1.8e-05 15.9 0.0 1 1 8.7e-07 4.2e-05 14.7 0.0 6 42 144 181 141 184 0.84 # 9761 # 10318 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.312 1_1 - 87 HTH_3 PF01381.17 55 5.6e-10 30.9 0.0 1 1 3.1e-11 7.3e-10 30.5 0.0 2 52 18 69 17 72 0.95 # 272 # 532 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_12 - 186 HTH_3 PF01381.17 55 0.00021 13.0 0.0 1 1 1.7e-05 0.00042 12.1 0.0 10 31 160 181 151 185 0.86 # 9761 # 10318 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.312 2_4 - 225 DDE_3 PF13358.1 146 3.2e-06 18.8 0.4 1 1 3.6e-07 5.8e-06 18.0 0.3 26 95 74 144 59 206 0.75 # 4231 # 4905 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.341 1_16 - 225 DDE_3 PF13358.1 146 4.1e-06 18.5 0.3 1 1 5.7e-07 9.1e-06 17.3 0.2 26 95 74 143 61 198 0.76 # 13155 # 13829 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 6_1 - 150 DDE_3 PF13358.1 146 8.5e-06 17.4 0.1 1 1 7.3e-07 1.2e-05 17.0 0.1 34 95 7 69 2 131 0.77 # 59 # 508 # -1 # ID=6_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.349 1_29 - 106 SecE PF00584.15 57 0.00049 11.6 0.1 1 3 0.019 0.93 1.1 0.3 27 39 8 20 3 26 0.72 # 25781 # 26098 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.358 1_29 - 106 SecE PF00584.15 57 0.00049 11.6 0.1 2 3 0.084 4 -1.0 0.1 31 38 47 54 34 63 0.54 # 25781 # 26098 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.358 1_29 - 106 SecE PF00584.15 57 0.00049 11.6 0.1 3 3 1e-05 0.00049 11.6 0.1 21 49 73 101 73 104 0.90 # 25781 # 26098 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.358 1_16 - 225 DDE_Tnp_IS66 PF03050.9 271 5.7e-08 24.1 1.9 1 2 2.3e-08 2.8e-07 21.8 0.4 16 97 21 96 7 135 0.76 # 13155 # 13829 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_16 - 225 DDE_Tnp_IS66 PF03050.9 271 5.7e-08 24.1 1.9 2 2 0.032 0.38 1.7 0.0 243 264 163 184 156 190 0.81 # 13155 # 13829 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 2_4 - 225 DDE_Tnp_IS66 PF03050.9 271 1.9e-07 22.4 4.3 1 2 3.5e-08 4.2e-07 21.3 1.2 16 97 21 96 7 134 0.75 # 4231 # 4905 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.341 2_4 - 225 DDE_Tnp_IS66 PF03050.9 271 1.9e-07 22.4 4.3 2 2 0.025 0.3 2.0 0.1 243 264 163 184 130 190 0.83 # 4231 # 4905 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.341 2_1 - 116 DDE_Tnp_IS66 PF03050.9 271 2.6e-07 21.9 0.5 1 1 2.4e-08 2.9e-07 21.8 0.5 15 97 20 96 7 114 0.78 # 3 # 350 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_10 - 539 DDE_Tnp_IS66 PF03050.9 271 0.00015 12.8 0.4 1 1 2.2e-05 0.00026 12.1 0.4 145 248 291 402 277 419 0.79 # 6950 # 8566 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.248 5_3 - 159 FaeA PF04703.7 62 0.00031 12.8 0.1 1 1 1.1e-05 0.00051 12.1 0.1 13 47 74 108 56 112 0.77 # 1810 # 2286 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_12 - 186 TrmB PF01978.14 68 1.8e-06 19.6 0.1 1 1 1.3e-07 3.2e-06 18.7 0.1 12 45 148 182 144 185 0.83 # 9761 # 10318 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.312 1_22 - 701 TrmB PF01978.14 68 0.00017 13.2 0.1 1 3 0.078 1.9 0.2 0.0 45 62 265 288 262 292 0.83 # 17612 # 19714 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 1_22 - 701 TrmB PF01978.14 68 0.00017 13.2 0.1 2 3 0.00087 0.021 6.5 0.0 3 24 384 405 382 408 0.88 # 17612 # 19714 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 1_22 - 701 TrmB PF01978.14 68 0.00017 13.2 0.1 3 3 0.098 2.3 -0.1 0.0 41 59 517 535 506 539 0.80 # 17612 # 19714 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 1_12 - 186 HTH_26 PF13443.1 63 8.4e-05 14.7 0.1 1 1 8.1e-06 0.00039 12.5 0.0 4 32 153 181 151 184 0.87 # 9761 # 10318 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.312 1_12 - 186 DUF134 PF02001.11 106 0.00024 12.9 0.1 1 1 8.9e-06 0.00043 12.1 0.1 51 81 153 183 133 185 0.84 # 9761 # 10318 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.312 1_26 - 671 ABC_tran PF00005.22 137 0.00033 12.8 3.3 1 1 5e-05 0.0024 10.1 3.3 12 51 258 299 250 599 0.82 # 22611 # 24623 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_21 - 159 zf-DHHC PF01529.15 174 0.00036 11.8 1.5 1 1 1.1e-05 0.0005 11.3 1.5 96 159 5 89 4 103 0.82 # 17120 # 17596 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.275 1_12 - 186 Rrf2 PF02082.15 83 0.00028 12.9 0.0 1 1 2.1e-05 0.001 11.1 0.0 17 51 151 185 149 185 0.86 # 9761 # 10318 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.312 5_2 - 245 Methyltransf_18 PF12847.2 112 9.3e-08 24.6 0.0 1 1 2.7e-09 1.3e-07 24.1 0.0 3 71 32 108 30 152 0.74 # 368 # 1102 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 1_26 - 671 AAA_29 PF13555.1 62 2.3e-05 15.8 0.2 1 1 1.8e-06 8.4e-05 14.0 0.1 19 39 256 273 243 278 0.81 # 22611 # 24623 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 2_5 - 320 RepA_N PF06970.6 76 2.8e-38 121.5 1.1 1 1 2.7e-39 1.3e-37 119.4 1.1 1 76 14 89 14 89 0.99 # 5024 # 5983 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.259 5_2 - 245 DnaA_N PF11638.3 65 0.00033 12.1 3.0 1 2 0.00082 0.039 5.5 0.0 24 54 111 139 101 147 0.86 # 368 # 1102 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 5_2 - 245 DnaA_N PF11638.3 65 0.00033 12.1 3.0 2 2 0.00057 0.027 6.0 1.0 44 59 192 207 191 213 0.88 # 368 # 1102 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 5_2 - 245 Methyltransf_25 PF13649.1 101 0.00033 12.9 0.0 1 1 1.5e-05 0.0007 11.9 0.0 1 69 34 96 34 121 0.83 # 368 # 1102 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 2_3 - 1025 TIGR00392 TIGR00392 861 3.5e-288 949.9 16.5 1 1 9.5e-290 4.6e-288 949.5 16.5 10 857 7 825 1 828 0.97 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 5_2 - 245 NodS PF05401.6 201 1.4e-05 16.4 0.0 1 1 4.8e-07 2.3e-05 15.7 0.0 44 107 31 94 9 115 0.84 # 368 # 1102 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 5_2 - 245 TIGR00755 TIGR00755 256 4e-49 158.7 1.7 1 1 1.1e-50 5e-49 158.4 1.7 6 254 7 237 3 239 0.88 # 368 # 1102 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 1_20 - 547 TraG-D_C PF12696.2 128 7.3e-38 121.2 0.1 1 1 1.5e-39 7.3e-38 121.2 0.1 1 127 289 413 289 414 0.90 # 15495 # 17135 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.298 1_22 - 701 zf-C4_Topoisom PF01396.14 39 7.3e-06 17.4 2.5 1 1 3.4e-07 1.6e-05 16.3 2.5 3 35 616 646 614 649 0.86 # 17612 # 19714 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 2_4 - 225 HTH_32 PF13565.1 77 3.2e-08 26.2 0.8 1 2 1.7e-06 2.1e-05 17.2 0.1 49 76 26 50 11 51 0.86 # 4231 # 4905 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.341 2_4 - 225 HTH_32 PF13565.1 77 3.2e-08 26.2 0.8 2 2 0.0021 0.025 7.3 0.1 28 63 135 171 102 183 0.72 # 4231 # 4905 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.341 1_16 - 225 HTH_32 PF13565.1 77 1e-07 24.6 0.7 1 2 1.7e-06 2.1e-05 17.2 0.1 49 76 26 50 11 51 0.86 # 13155 # 13829 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_16 - 225 HTH_32 PF13565.1 77 1e-07 24.6 0.7 2 2 0.0067 0.08 5.7 0.0 30 63 138 171 99 183 0.72 # 13155 # 13829 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_12 - 186 HTH_32 PF13565.1 77 4.3e-07 22.6 0.1 1 1 1.5e-07 1.8e-06 20.6 0.1 16 77 127 180 118 180 0.70 # 9761 # 10318 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.312 2_1 - 116 HTH_32 PF13565.1 77 1.4e-05 17.8 0.0 1 1 2.3e-06 2.8e-05 16.8 0.0 48 76 25 50 9 51 0.87 # 3 # 350 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/1c888c0b-c6df-40fe-80a1-8af63febbbf7 # Target file: checkm_output/bins/pGCA_000013465.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000013465.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1c888c0b-c6df-40fe-80a1-8af63febbbf7 checkm_output/bins/pGCA_000013465.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:51:45 2021 # [ok]