# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_12 - 112 RepL PF05732.6 165 4.3e-05 14.3 0.0 1 1 1.5e-06 6e-05 13.9 0.0 74 106 18 50 2 66 0.82 # 8518 # 8853 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 1_3 - 235 AAA_19 PF13245.1 76 4.2e-05 14.9 0.1 1 1 2.1e-06 8.4e-05 13.9 0.1 11 31 28 47 21 71 0.83 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_3 - 235 DUF258 PF03193.11 161 2.3e-07 21.7 0.1 1 1 9.8e-09 3.8e-07 21.0 0.1 16 69 7 61 1 78 0.83 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 5_1 - 246 GerE PF00196.14 58 2.4e-07 21.6 1.7 1 2 1.2e-06 4.7e-05 14.3 0.2 19 42 2 25 2 26 0.92 # 70 # 807 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=12bp;gc_cont=0.279 5_1 - 246 GerE PF00196.14 58 2.4e-07 21.6 1.7 2 2 0.00047 0.018 6.0 0.1 21 45 97 121 83 133 0.84 # 70 # 807 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=12bp;gc_cont=0.279 3_6 - 586 Peptidase_M56 PF05569.6 299 3.7e-95 309.8 13.8 1 1 9.4e-97 3.7e-95 309.8 13.8 2 299 4 298 3 298 0.99 # 2190 # 3947 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.263 1_8 - 245 TIGR00406 TIGR00406 288 1.5e-11 35.5 0.0 1 1 5.3e-13 2.1e-11 35.0 0.0 157 256 40 140 32 143 0.87 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 1_3 - 235 TIGR01978 TIGR01978 243 6.9e-22 69.2 2.8 1 1 5.8e-22 1.1e-20 65.3 2.8 2 232 3 216 2 224 0.84 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 2_6 - 181 TIGR01978 TIGR01978 243 0.0001 13.0 1.2 1 1 7.2e-06 0.00014 12.6 1.2 150 228 37 117 10 132 0.80 # 3390 # 3932 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.262 1_12 - 112 DDRGK PF09756.4 188 0.00026 12.0 0.0 1 1 8e-06 0.00031 11.7 0.0 103 142 9 48 2 60 0.86 # 8518 # 8853 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 1_3 - 235 AAA_18 PF13238.1 129 0.00013 13.9 1.1 1 1 7.5e-06 0.00029 12.7 1.1 1 40 30 88 30 219 0.73 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 3_4 - 193 MarR_2 PF12802.2 62 1.7e-07 22.5 0.0 1 2 0.0094 0.18 3.2 0.1 23 45 112 134 78 137 0.90 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 3_4 - 193 MarR_2 PF12802.2 62 1.7e-07 22.5 0.0 2 2 4e-07 7.8e-06 17.2 0.0 7 48 149 187 144 188 0.91 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 5_1 - 246 MarR_2 PF12802.2 62 0.00018 12.8 0.0 1 1 2e-05 0.0004 11.7 0.0 23 45 3 25 2 26 0.95 # 70 # 807 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=12bp;gc_cont=0.279 1_8 - 245 Methyltransf_11 PF08241.7 95 5.9e-28 88.9 0.0 1 1 2.3e-29 8.9e-28 88.3 0.0 1 95 47 141 47 141 0.99 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 1_7 - 290 Lambda_tail_I PF06805.7 82 0.0002 12.8 0.0 1 1 1.4e-05 0.00055 11.4 0.0 18 74 151 201 140 207 0.82 # 4291 # 5160 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_8 - 245 Methyltransf_4 PF02390.12 197 4.1e-06 17.5 0.1 1 2 1.5e-06 5.8e-05 13.8 0.0 18 58 41 80 11 101 0.84 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 1_8 - 245 Methyltransf_4 PF02390.12 197 4.1e-06 17.5 0.1 2 2 0.0085 0.33 1.5 0.1 115 138 123 146 120 209 0.78 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 1_12 - 112 HTH_17 PF12728.2 51 0.00012 13.9 0.0 1 1 2.6e-05 0.0002 13.2 0.0 5 29 23 49 19 60 0.76 # 8518 # 8853 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 3_1 - 79 HTH_17 PF12728.2 51 0.00028 12.8 2.8 1 1 8.3e-05 0.00065 11.6 2.8 12 40 41 77 26 78 0.78 # 1 # 237 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.329 1_1 - 79 HTH_17 PF12728.2 51 0.00029 12.7 2.8 1 1 8.3e-05 0.00065 11.6 2.8 12 40 41 77 26 78 0.78 # 1 # 237 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 6_1 - 188 HTH_17 PF12728.2 51 0.0028 9.6 5.5 1 1 0.00025 0.002 10.0 2.0 12 40 4 40 3 44 0.73 # 2 # 565 # 1 # ID=6_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.353 7_1 - 165 HTH_17 PF12728.2 51 0.01 7.7 8.4 1 1 0.00025 0.002 10.1 2.3 12 40 20 56 18 60 0.73 # 3 # 497 # 1 # ID=7_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.341 1_3 - 235 AAA_22 PF13401.1 131 1.8e-05 16.5 0.5 1 2 1.3e-06 5.1e-05 15.0 0.2 9 28 32 51 25 157 0.84 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_3 - 235 AAA_22 PF13401.1 131 1.8e-05 16.5 0.5 2 2 0.06 2.4 -0.1 0.0 53 88 164 198 94 213 0.62 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_8 - 245 Pox_MCEL PF03291.11 332 1.2e-05 15.8 0.3 1 1 2.5e-05 0.00099 9.5 0.2 56 104 35 83 31 173 0.70 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 1_3 - 235 TIGR00634 TIGR00634 563 2.3e-05 14.7 0.2 1 2 0.0024 0.094 2.7 0.4 12 42 16 47 9 60 0.87 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_3 - 235 TIGR00634 TIGR00634 563 2.3e-05 14.7 0.2 2 2 1.9e-05 0.00075 9.7 0.0 441 513 131 200 123 224 0.82 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 5_1 - 246 Sigma70_r4_2 PF08281.7 54 1.2e-05 16.3 0.3 1 1 4.3e-06 5.6e-05 14.2 0.0 28 49 3 24 2 25 0.94 # 70 # 807 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=12bp;gc_cont=0.279 1_12 - 112 Sigma70_r4_2 PF08281.7 54 4.2e-05 14.6 0.0 1 1 5.2e-06 6.7e-05 13.9 0.0 29 47 22 40 20 41 0.88 # 8518 # 8853 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 1_5 - 217 Sigma70_r4_2 PF08281.7 54 0.00014 13.0 0.1 1 1 0.0001 0.0013 9.8 0.1 25 45 40 60 12 63 0.86 # 3271 # 3921 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.296 3_4 - 193 Mga PF05043.8 87 8.2e-07 20.9 0.5 1 2 0.021 0.28 3.2 0.1 24 52 104 132 74 137 0.83 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 3_4 - 193 Mga PF05043.8 87 8.2e-07 20.9 0.5 2 2 2.7e-06 3.5e-05 15.7 0.0 16 55 147 185 143 187 0.93 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 2_6 - 181 Mga PF05043.8 87 8.2e-05 14.5 2.0 1 2 0.03 0.39 2.7 0.3 4 65 25 86 22 94 0.76 # 3390 # 3932 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.262 2_6 - 181 Mga PF05043.8 87 8.2e-05 14.5 2.0 2 2 7.6e-05 0.00099 11.0 0.1 26 52 153 179 144 180 0.89 # 3390 # 3932 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.262 1_12 - 112 Mga PF05043.8 87 0.00014 13.7 0.0 1 1 1.9e-05 0.00024 13.0 0.0 25 56 14 45 5 51 0.84 # 8518 # 8853 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 3_4 - 193 HTH_30 PF13556.1 59 0.0002 12.5 0.1 1 1 1.1e-05 0.00042 11.5 0.1 3 37 151 185 150 187 0.93 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_8 - 245 Methyltransf_31 PF13847.1 152 5.2e-23 72.9 0.0 1 1 1.7e-24 6.6e-23 72.5 0.0 3 111 42 144 40 194 0.89 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 1_12 - 112 FUR PF01475.14 120 2.5e-05 15.8 0.0 1 1 8e-07 3.1e-05 15.5 0.0 35 57 26 48 5 58 0.83 # 8518 # 8853 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 2_2 - 175 GrpE PF01025.14 166 8.1e-05 13.8 4.1 1 1 2.9e-06 0.00011 13.3 4.1 15 67 30 83 5 101 0.83 # 695 # 1219 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.337 1_8 - 245 FmrO PF07091.6 251 2.3e-05 15.0 0.0 1 1 8.1e-07 3.2e-05 14.6 0.0 107 176 44 111 32 134 0.80 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 3_4 - 193 Mor PF08765.6 108 0.0003 12.2 0.1 1 1 1.5e-05 0.00057 11.3 0.1 71 103 159 191 121 192 0.85 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 2_4 - 67 ATP-synt_B PF00430.13 132 0.0026 9.2 2.9 1 2 0.0037 0.14 3.5 0.8 5 21 7 23 4 33 0.77 # 2197 # 2397 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.259 2_4 - 67 ATP-synt_B PF00430.13 132 0.0026 9.2 2.9 2 2 0.00058 0.022 6.1 0.0 12 30 37 55 35 61 0.91 # 2197 # 2397 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.259 1_3 - 235 NB-ARC PF00931.17 287 6.4e-05 13.4 0.3 1 1 3.2e-06 0.00013 12.5 0.3 17 45 25 53 12 63 0.80 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_3 - 235 AAA_23 PF13476.1 202 1.3e-06 20.4 1.3 1 1 7.3e-08 2.8e-06 19.3 1.3 10 40 11 48 2 183 0.84 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_3 - 235 Mg_chelatase PF01078.16 207 0.00028 11.6 0.0 1 1 1.2e-05 0.00046 10.9 0.0 7 44 12 49 6 71 0.87 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 3_4 - 193 HTH_22 PF13309.1 64 4.1e-08 24.6 0.2 1 2 0.051 0.49 1.9 0.0 23 38 70 85 64 86 0.87 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 3_4 - 193 HTH_22 PF13309.1 64 4.1e-08 24.6 0.2 2 2 2.5e-07 2.4e-06 18.9 0.1 13 64 137 182 128 182 0.79 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 5_1 - 246 HTH_22 PF13309.1 64 3.5e-05 15.2 0.6 1 1 2.6e-05 0.00026 12.4 0.0 43 64 2 23 1 23 0.92 # 70 # 807 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=12bp;gc_cont=0.279 1_12 - 112 HTH_22 PF13309.1 64 7.4e-05 14.1 0.0 1 1 3.5e-05 0.00034 12.0 0.0 46 64 23 41 21 41 0.91 # 8518 # 8853 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 2_6 - 181 HTH_22 PF13309.1 64 9.3e-05 13.8 0.4 1 1 3.9e-05 0.00038 11.8 0.0 46 64 161 179 156 179 0.84 # 3390 # 3932 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.262 7_1 - 165 MULE PF10551.4 93 6.4e-05 14.7 0.0 1 1 4.7e-06 9.1e-05 14.2 0.0 19 76 71 125 35 140 0.84 # 3 # 497 # 1 # ID=7_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.341 6_1 - 188 MULE PF10551.4 93 0.00023 13.0 0.0 1 1 1.9e-05 0.00036 12.3 0.0 18 76 54 109 26 124 0.84 # 2 # 565 # 1 # ID=6_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.353 5_1 - 246 ACT_5 PF13710.1 63 0.00018 12.9 0.3 1 1 4.6e-06 0.00018 12.9 0.3 3 56 45 102 43 103 0.79 # 70 # 807 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=12bp;gc_cont=0.279 3_1 - 79 HEM4 PF02602.10 231 3.2e-05 14.8 0.0 1 1 2.5e-06 3.2e-05 14.8 0.0 123 155 22 54 7 71 0.77 # 1 # 237 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.329 2_1 - 62 HEM4 PF02602.10 231 9.7e-05 13.2 0.0 1 1 7.5e-06 9.7e-05 13.2 0.0 123 154 22 53 7 60 0.82 # 3 # 188 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_1 - 79 HEM4 PF02602.10 231 9.9e-05 13.2 0.0 1 1 7.6e-06 9.9e-05 13.2 0.0 123 155 22 54 7 71 0.77 # 1 # 237 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 4_3 - 319 HTH_36 PF13730.1 55 4e-09 28.1 0.4 1 1 7.2e-10 9.3e-09 27.0 0.4 1 55 28 93 28 93 0.90 # 700 # 1656 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.282 3_4 - 193 HTH_36 PF13730.1 55 2.4e-05 16.1 0.1 1 1 3.9e-06 5.1e-05 15.0 0.1 28 52 163 187 145 188 0.92 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_12 - 112 HTH_36 PF13730.1 55 6.6e-05 14.7 0.0 1 1 9.8e-06 0.00013 13.7 0.0 28 54 22 48 8 48 0.83 # 8518 # 8853 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 3_5 - 127 Penicillinase_R PF03965.11 115 1.5e-37 119.8 1.3 1 1 4.3e-39 1.7e-37 119.7 1.3 1 114 8 121 8 122 0.99 # 1820 # 2200 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.255 1_10 - 181 Acetyltransf_4 PF13420.1 155 7e-16 50.1 0.5 1 1 2.5e-17 9.6e-16 49.7 0.5 14 135 40 154 37 164 0.92 # 6813 # 7355 # 1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.378 1_3 - 235 AAA_33 PF13671.1 143 1e-05 17.1 0.1 1 1 5.4e-07 2.1e-05 16.0 0.1 1 33 29 83 29 204 0.64 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_3 - 235 AAA_30 PF13604.1 196 0.00021 12.5 0.0 1 1 1.2e-05 0.00049 11.3 0.0 18 49 27 58 14 79 0.81 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_3 - 235 Miro PF08477.8 119 1.5e-06 20.3 0.0 1 1 7.7e-08 3e-06 19.3 0.0 2 65 30 95 29 107 0.71 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_10 - 181 Acetyltransf_CG PF14542.1 78 5.2e-06 17.9 0.0 1 1 2.5e-07 9.8e-06 17.1 0.0 8 56 81 130 64 133 0.80 # 6813 # 7355 # 1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.378 2_8 - 138 Usp PF00582.21 140 1.7e-25 81.4 0.6 1 1 4.9e-27 1.9e-25 81.3 0.6 1 140 1 137 1 137 0.97 # 5511 # 5924 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_8 - 245 MTS PF05175.9 170 2.9e-13 41.1 0.0 1 1 1.2e-14 4.5e-13 40.5 0.0 23 140 34 143 30 151 0.87 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 7_1 - 165 AAA_17 PF13207.1 121 1.1e-06 21.1 0.9 1 1 7.8e-08 1.5e-06 20.6 0.9 23 113 3 101 2 153 0.84 # 3 # 497 # 1 # ID=7_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.341 1_3 - 235 AAA_17 PF13207.1 121 8e-05 15.1 1.5 1 1 6.9e-06 0.00013 14.3 1.4 1 17 29 45 29 132 0.83 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_8 - 245 PrmA PF06325.8 295 1.7e-11 35.3 0.0 1 1 6.8e-13 2.6e-11 34.7 0.0 161 257 42 141 27 142 0.90 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 1_3 - 235 PhoH PF02562.11 205 4.2e-05 14.4 0.1 1 1 3.2e-06 0.00012 12.9 0.0 10 48 14 57 7 86 0.71 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 3_4 - 193 HTH_29 PF13551.1 112 2.6e-06 19.2 0.9 1 2 0.033 0.42 2.4 0.2 32 68 121 155 118 159 0.73 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 3_4 - 193 HTH_29 PF13551.1 112 2.6e-06 19.2 0.9 2 2 3.1e-06 4e-05 15.4 0.0 7 39 156 187 152 190 0.91 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 5_1 - 246 HTH_29 PF13551.1 112 5e-05 15.1 0.0 1 1 1.5e-05 0.0002 13.1 0.0 14 89 3 73 1 85 0.79 # 70 # 807 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=12bp;gc_cont=0.279 1_12 - 112 HTH_29 PF13551.1 112 6.3e-05 14.7 0.0 1 1 6.8e-06 8.8e-05 14.3 0.0 4 41 12 48 10 57 0.88 # 8518 # 8853 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 1_8 - 245 CMAS PF02353.15 273 1.8e-11 35.2 0.1 1 1 6.8e-13 2.7e-11 34.6 0.1 62 164 42 141 32 205 0.83 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 3_5 - 127 MarR PF01047.17 59 6e-09 27.2 0.1 1 1 8e-10 1e-08 26.4 0.1 1 54 8 65 8 65 0.97 # 1820 # 2200 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.255 3_4 - 193 MarR PF01047.17 59 9.5e-06 16.9 0.1 1 1 1.9e-06 2.4e-05 15.6 0.1 2 45 146 188 145 188 0.89 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_12 - 112 MarR PF01047.17 59 2e-05 15.9 0.1 1 1 2.1e-06 2.8e-05 15.4 0.1 7 45 9 47 5 48 0.93 # 8518 # 8853 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 1_8 - 245 DREV PF05219.7 265 6.6e-06 16.7 0.0 1 1 2.3e-07 9.1e-06 16.2 0.0 90 196 38 151 30 197 0.79 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 1_8 - 245 Methyltransf_12 PF08242.7 99 4.3e-17 54.1 0.0 1 1 1.7e-18 6.4e-17 53.5 0.0 1 99 47 139 47 139 0.81 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 1_12 - 112 HTH_20 PF12840.2 61 1.8e-07 22.5 0.0 1 1 1.5e-08 2.9e-07 21.9 0.0 21 53 16 48 7 50 0.86 # 8518 # 8853 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 3_4 - 193 HTH_20 PF12840.2 61 0.00025 12.5 0.0 1 1 7.1e-05 0.0014 10.1 0.0 15 49 152 185 145 188 0.90 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_3 - 235 ArgK PF03308.11 267 0.00016 12.0 0.2 1 1 7.3e-06 0.00028 11.2 0.2 16 59 14 57 3 61 0.75 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 2_6 - 181 HTH_5 PF01022.15 47 2.9e-05 15.3 0.6 1 2 0.016 0.64 1.4 0.1 3 20 38 55 36 65 0.74 # 3390 # 3932 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.262 2_6 - 181 HTH_5 PF01022.15 47 2.9e-05 15.3 0.6 2 2 2e-05 0.00078 10.7 0.0 14 38 156 180 150 180 0.88 # 3390 # 3932 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.262 3_4 - 193 Terminase_5 PF06056.7 58 0.00014 13.0 0.1 1 1 7.1e-06 0.00028 12.1 0.1 7 36 154 183 153 189 0.91 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_10 - 181 Acetyltransf_3 PF13302.1 142 2.8e-08 25.6 0.1 1 1 9.1e-10 3.6e-08 25.3 0.1 30 142 49 154 33 154 0.72 # 6813 # 7355 # 1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.378 1_10 - 181 FR47 PF08445.5 86 8.4e-05 13.9 0.0 1 1 3.6e-06 0.00014 13.2 0.0 21 78 96 154 91 162 0.82 # 6813 # 7355 # 1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.378 3_4 - 193 HTH_24 PF13412.1 48 1.9e-10 31.6 0.2 1 1 3.7e-11 3.6e-10 30.8 0.2 1 44 145 187 145 188 0.97 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_12 - 112 HTH_24 PF13412.1 48 2.3e-09 28.2 0.3 1 1 3.3e-10 3.2e-09 27.7 0.3 7 46 9 48 5 48 0.96 # 8518 # 8853 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 5_1 - 246 HTH_24 PF13412.1 48 7.6e-05 13.7 1.4 1 1 3.7e-05 0.00036 11.5 0.0 19 41 3 25 2 25 0.96 # 70 # 807 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=12bp;gc_cont=0.279 2_6 - 181 HTH_24 PF13412.1 48 0.00032 11.7 2.1 1 1 0.00011 0.0011 10.0 0.0 19 40 159 180 153 180 0.90 # 3390 # 3932 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.262 1_3 - 235 AAA_21 PF13304.1 303 2.5e-19 61.8 0.0 1 1 2.7e-18 1.1e-16 53.2 0.0 3 297 31 188 29 190 0.81 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 5_1 - 246 HTH_AsnC-type PF13404.1 42 6.9e-05 14.0 0.1 1 2 6.1e-05 0.0012 10.0 0.0 19 41 3 25 2 26 0.94 # 70 # 807 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=12bp;gc_cont=0.279 5_1 - 246 HTH_AsnC-type PF13404.1 42 6.9e-05 14.0 0.1 2 2 0.038 0.75 1.1 0.1 3 15 80 92 79 100 0.82 # 70 # 807 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=12bp;gc_cont=0.279 1_12 - 112 HTH_AsnC-type PF13404.1 42 0.0002 12.5 0.1 1 1 1.5e-05 0.00029 12.0 0.1 8 42 10 44 8 44 0.90 # 8518 # 8853 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 6_1 - 188 DDE_Tnp_IS240 PF13610.1 140 5.9e-44 141.0 2.7 1 1 7.9e-45 7.7e-44 140.6 2.7 3 139 35 166 33 167 0.95 # 2 # 565 # 1 # ID=6_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.353 7_1 - 165 DDE_Tnp_IS240 PF13610.1 140 2.8e-41 132.4 1.8 1 1 3.8e-42 3.7e-41 132.0 1.8 3 114 51 160 49 165 0.94 # 3 # 497 # 1 # ID=7_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.341 5_2 - 70 DDE_Tnp_IS240 PF13610.1 140 5.9e-12 37.3 0.3 1 1 7.1e-13 6.9e-12 37.1 0.3 88 139 10 58 2 59 0.89 # 980 # 1189 # -1 # ID=5_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.310 4_1 - 80 DDE_Tnp_IS240 PF13610.1 140 7.9e-12 36.9 0.2 1 1 9.7e-13 9.5e-12 36.7 0.2 88 139 10 58 2 59 0.89 # 3 # 242 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.329 1_8 - 245 TIGR00091 TIGR00091 194 0.00029 11.5 0.0 1 2 3.5e-05 0.0014 9.3 0.0 16 53 42 78 28 91 0.79 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 1_8 - 245 TIGR00091 TIGR00091 194 0.00029 11.5 0.0 2 2 0.043 1.7 -0.8 0.0 112 130 123 141 120 151 0.85 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 1_3 - 235 TIGR03263 TIGR03263 180 0.00026 11.9 0.1 1 1 1.3e-05 0.00052 10.9 0.1 5 23 31 49 27 100 0.81 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_3 - 235 IstB_IS21 PF01695.12 178 5.7e-07 20.7 0.1 1 2 3.2e-06 0.00013 13.0 0.0 40 75 21 56 6 68 0.74 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_3 - 235 IstB_IS21 PF01695.12 178 5.7e-07 20.7 0.1 2 2 0.00062 0.024 5.6 0.0 98 148 138 188 122 196 0.79 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 3_4 - 193 HTH_IclR PF09339.5 52 2e-05 15.7 0.0 1 1 4.6e-06 5.9e-05 14.2 0.0 8 44 152 186 150 187 0.84 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_12 - 112 HTH_IclR PF09339.5 52 0.00013 13.1 0.0 1 1 1.4e-05 0.00019 12.7 0.0 5 46 7 47 4 48 0.81 # 8518 # 8853 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 2_6 - 181 HTH_IclR PF09339.5 52 0.00044 11.5 0.0 1 1 0.0002 0.0027 9.0 0.0 20 39 159 178 153 180 0.91 # 3390 # 3932 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.262 3_4 - 193 HTH_7 PF02796.10 45 5.7e-21 65.8 0.1 1 1 9.8e-22 1.3e-20 64.7 0.1 1 44 140 183 140 184 0.98 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 2_6 - 181 HTH_7 PF02796.10 45 4.6e-09 27.7 0.1 1 1 6.5e-10 8.4e-09 26.8 0.1 1 42 137 178 137 180 0.92 # 3390 # 3932 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.262 1_12 - 112 HTH_7 PF02796.10 45 2.6e-08 25.3 0.3 1 1 1.1e-08 1.4e-07 22.9 0.2 15 40 12 38 1 41 0.89 # 8518 # 8853 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 1_10 - 181 Acetyltransf_8 PF13523.1 152 1.7e-08 26.1 0.0 1 1 7.6e-10 3e-08 25.3 0.0 17 138 42 155 36 160 0.85 # 6813 # 7355 # 1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.378 1_12 - 112 HTH_DeoR PF08220.7 57 9.9e-09 26.3 0.1 1 1 1.1e-09 1.5e-08 25.7 0.1 1 43 6 48 6 51 0.92 # 8518 # 8853 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 3_4 - 193 HTH_DeoR PF08220.7 57 4.7e-05 14.5 0.0 1 1 9e-06 0.00012 13.3 0.0 17 41 163 187 149 190 0.86 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 3_5 - 127 HTH_DeoR PF08220.7 57 0.00031 11.9 0.3 1 1 0.0001 0.0013 9.9 0.1 8 46 18 60 14 62 0.76 # 1820 # 2200 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.255 2_11 - 215 Rep_3 PF01051.16 222 5.8e-37 118.9 8.0 1 1 2e-38 7.9e-37 118.5 8.0 89 222 14 144 2 144 0.92 # 7219 # 7863 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.295 3_4 - 193 Phage_antitermQ PF06530.7 126 0.00022 12.4 0.0 1 2 0.027 1 0.5 0.0 52 94 58 100 37 112 0.82 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 3_4 - 193 Phage_antitermQ PF06530.7 126 0.00022 12.4 0.0 2 2 4.3e-05 0.0017 9.5 0.0 62 103 144 185 141 191 0.90 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_8 - 245 MetW PF07021.7 193 4.3e-05 14.5 0.0 1 1 1.6e-06 6.1e-05 14.0 0.0 8 101 35 132 29 165 0.72 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 1_3 - 235 AAA_14 PF13173.1 128 0.00032 12.2 1.1 1 1 9.2e-05 0.0036 8.8 1.1 3 26 28 51 26 228 0.89 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_8 - 245 NNMT_PNMT_TEMT PF01234.12 256 9.4e-05 13.0 0.0 1 2 0.0059 0.23 1.9 0.0 46 86 34 72 3 82 0.68 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 1_8 - 245 NNMT_PNMT_TEMT PF01234.12 256 9.4e-05 13.0 0.0 2 2 4.2e-05 0.0016 8.9 0.0 158 198 106 142 88 151 0.85 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 1_3 - 235 AAA PF00004.24 132 2.5e-05 16.1 0.7 1 1 2.6e-06 0.0001 14.1 0.7 3 22 32 51 30 191 0.79 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_3 - 235 AAA_10 PF12846.2 304 8.9e-05 13.5 0.0 1 1 3.2e-06 0.00013 13.0 0.0 6 38 32 64 29 160 0.78 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_3 - 235 AAA_16 PF13191.1 185 1.8e-05 16.4 0.0 1 1 8.2e-07 3.2e-05 15.5 0.0 24 45 27 48 14 61 0.89 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 3_4 - 193 HTH_23 PF13384.1 50 4.8e-08 24.2 0.0 1 1 2.8e-08 1.2e-07 22.9 0.0 13 41 156 184 151 189 0.88 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 2_1 - 62 HTH_23 PF13384.1 50 1e-06 19.9 0.3 1 2 0.076 0.33 2.4 0.0 18 27 26 35 17 36 0.80 # 3 # 188 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 2_1 - 62 HTH_23 PF13384.1 50 1e-06 19.9 0.3 2 2 5.1e-06 2.2e-05 15.7 0.1 28 41 41 54 40 57 0.92 # 3 # 188 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 5_1 - 246 HTH_23 PF13384.1 50 1.7e-06 19.2 0.0 1 1 1.9e-06 8e-06 17.1 0.0 18 42 2 26 2 32 0.90 # 70 # 807 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=12bp;gc_cont=0.279 1_12 - 112 HTH_23 PF13384.1 50 2.7e-06 18.6 0.0 1 1 9.1e-07 3.9e-06 18.1 0.0 19 39 21 41 10 50 0.78 # 8518 # 8853 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 1_1 - 79 HTH_23 PF13384.1 50 2.9e-06 18.5 3.0 1 2 0.089 0.39 2.2 0.0 18 27 26 35 17 38 0.80 # 1 # 237 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 1_1 - 79 HTH_23 PF13384.1 50 2.9e-06 18.5 3.0 2 2 6.8e-06 2.9e-05 15.3 1.2 28 41 41 54 40 70 0.93 # 1 # 237 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 3_1 - 79 HTH_23 PF13384.1 50 3.8e-06 18.1 3.0 1 1 6.8e-06 2.9e-05 15.3 1.2 28 41 41 54 40 70 0.93 # 1 # 237 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.329 7_1 - 165 HTH_23 PF13384.1 50 4.5e-06 17.9 0.9 1 1 2.2e-05 9.5e-05 13.7 0.1 28 41 20 33 19 37 0.92 # 3 # 497 # 1 # ID=7_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.341 6_1 - 188 HTH_23 PF13384.1 50 8.4e-06 17.0 0.6 1 1 1.5e-05 6.4e-05 14.2 0.1 28 41 4 17 3 20 0.92 # 2 # 565 # 1 # ID=6_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.353 2_6 - 181 HTH_23 PF13384.1 50 0.00034 11.9 0.0 1 1 0.00013 0.00057 11.2 0.0 10 38 149 178 140 180 0.88 # 3390 # 3932 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.262 2_8 - 138 SAM_MT PF04445.8 235 0.00016 12.4 0.2 1 1 4.7e-06 0.00018 12.2 0.2 8 110 33 135 28 137 0.85 # 5511 # 5924 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_10 - 181 Acetyltransf_7 PF13508.1 79 1.8e-15 48.5 0.2 1 1 7.6e-17 3e-15 47.8 0.2 5 78 74 154 70 155 0.86 # 6813 # 7355 # 1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.378 1_3 - 235 PduV-EutP PF10662.4 143 7.4e-05 13.9 0.0 1 1 3.3e-06 0.00013 13.1 0.0 6 24 32 50 28 87 0.86 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_12 - 112 Sigma70_ECF PF07638.6 185 0.00033 11.9 0.0 1 1 1.1e-05 0.00043 11.6 0.0 154 173 22 41 10 46 0.89 # 8518 # 8853 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 2_6 - 181 UPF0122 PF04297.9 101 4.1e-05 15.2 2.7 1 1 2.8e-06 5.5e-05 14.8 0.3 25 55 149 179 143 180 0.90 # 3390 # 3932 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.262 3_4 - 193 UPF0122 PF04297.9 101 4.8e-05 15.0 0.1 1 1 7.1e-06 0.00014 13.5 0.0 19 58 146 185 142 190 0.88 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_3 - 235 ATP-synt_ab PF00006.20 215 0.00034 11.7 0.3 1 1 9.6e-06 0.00037 11.6 0.3 7 39 19 51 13 193 0.84 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 2_2 - 175 RRF PF01765.14 165 3.6e-05 14.9 6.5 1 1 1.2e-06 4.5e-05 14.5 6.5 82 164 3 87 1 88 0.78 # 695 # 1219 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.337 1_8 - 245 Ubie_methyltran PF01209.13 233 4.5e-17 53.5 0.0 1 1 1.7e-18 6.6e-17 52.9 0.0 40 151 35 141 13 185 0.86 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 1_8 - 245 Methyltrans_SAM PF10672.4 286 5.9e-05 13.5 0.0 1 2 0.00036 0.014 5.8 0.0 123 162 42 81 34 102 0.79 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 1_8 - 245 Methyltrans_SAM PF10672.4 286 5.9e-05 13.5 0.0 2 2 0.00036 0.014 5.7 0.0 210 245 115 150 106 167 0.88 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 3_5 - 127 S-AdoMet_synt_M PF02772.11 120 0.00022 12.8 1.9 1 2 1.4e-05 0.00055 11.5 1.2 64 106 21 62 3 74 0.78 # 1820 # 2200 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.255 3_5 - 127 S-AdoMet_synt_M PF02772.11 120 0.00022 12.8 1.9 2 2 0.045 1.7 0.2 0.0 64 90 89 115 70 126 0.62 # 1820 # 2200 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.255 1_5 - 217 HTH_6 PF01418.12 77 0.00029 12.2 0.5 1 1 2.5e-05 0.00097 10.5 0.1 3 53 8 60 6 65 0.81 # 3271 # 3921 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.296 2_2 - 175 TIGR02168 TIGR02168 1181 0.00078 8.4 8.5 1 1 4.9e-05 0.00095 8.1 8.5 371 461 6 97 2 104 0.47 # 695 # 1219 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.337 5_1 - 246 TIGR02168 TIGR02168 1181 0.056 2.2 36.6 1 1 0.0037 0.072 1.9 36.6 238 468 27 211 2 232 0.38 # 70 # 807 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=12bp;gc_cont=0.279 1_10 - 181 Acetyltransf_10 PF13673.1 117 3.7e-08 25.1 0.0 1 1 1.2e-09 4.8e-08 24.8 0.0 30 117 58 153 33 153 0.80 # 6813 # 7355 # 1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.378 1_12 - 112 HTH_11 PF08279.7 55 2.9e-21 66.5 0.2 1 1 4.4e-22 4.3e-21 66.0 0.2 1 55 6 59 6 59 0.96 # 8518 # 8853 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 3_4 - 193 HTH_11 PF08279.7 55 7.4e-09 26.8 0.1 1 1 1.8e-09 1.8e-08 25.6 0.1 5 41 152 186 147 189 0.82 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 2_6 - 181 HTH_11 PF08279.7 55 1.8e-07 22.4 1.4 1 1 1.4e-07 1.4e-06 19.6 0.1 3 37 147 179 145 180 0.85 # 3390 # 3932 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.262 5_1 - 246 HTH_11 PF08279.7 55 4.7e-07 21.0 0.1 1 1 4.8e-08 4.7e-07 21.0 0.1 17 40 3 26 2 31 0.94 # 70 # 807 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=12bp;gc_cont=0.279 1_3 - 235 UPF0079 PF02367.12 123 4e-05 14.9 0.0 1 1 2.1e-06 8.1e-05 13.9 0.0 11 37 23 49 6 68 0.81 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 3_1 - 79 Arg_repressor PF01316.16 70 3.2e-05 15.1 0.0 1 1 3.3e-06 4.3e-05 14.7 0.0 24 49 30 55 24 75 0.79 # 1 # 237 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.329 2_1 - 62 Arg_repressor PF01316.16 70 0.00018 12.7 0.0 1 1 1.7e-05 0.00022 12.4 0.0 24 47 30 53 23 57 0.91 # 3 # 188 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_1 - 79 Arg_repressor PF01316.16 70 0.00024 12.3 0.0 1 1 2.5e-05 0.00033 11.8 0.0 24 49 30 55 24 75 0.79 # 1 # 237 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 1_12 - 112 HTH_28 PF13518.1 52 6.9e-07 20.9 0.0 1 1 1.8e-07 1e-06 20.3 0.0 7 41 12 48 9 53 0.82 # 8518 # 8853 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 2_1 - 62 HTH_28 PF13518.1 52 1.1e-05 17.0 0.7 1 1 3.5e-06 2e-05 16.2 0.7 14 36 30 54 16 55 0.79 # 3 # 188 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 3_4 - 193 HTH_28 PF13518.1 52 1.7e-05 16.4 0.0 1 1 8.1e-06 4.5e-05 15.1 0.0 8 38 156 186 155 189 0.93 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 3_1 - 79 HTH_28 PF13518.1 52 2.7e-05 15.8 0.5 1 1 4.9e-06 2.7e-05 15.8 0.5 15 36 31 54 17 55 0.80 # 1 # 237 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.329 7_1 - 165 HTH_28 PF13518.1 52 3.6e-05 15.4 0.2 1 1 2.7e-05 0.00015 13.4 0.2 16 36 11 33 3 34 0.82 # 3 # 497 # 1 # ID=7_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.341 1_1 - 79 HTH_28 PF13518.1 52 0.00011 13.9 0.4 1 1 1.9e-05 0.00011 13.9 0.4 23 36 41 54 16 55 0.90 # 1 # 237 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 5_1 - 246 HTH_28 PF13518.1 52 0.00016 13.3 0.0 1 1 8.2e-05 0.00046 11.8 0.0 14 37 3 26 1 30 0.91 # 70 # 807 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=12bp;gc_cont=0.279 1_8 - 245 FtsJ PF01728.14 181 7.8e-06 17.5 0.0 1 1 3.2e-07 1.3e-05 16.9 0.0 23 72 42 87 18 197 0.74 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 1_8 - 245 TIGR03534 TIGR03534 253 4.5e-07 20.8 0.0 1 2 3.1e-07 1.2e-05 16.1 0.0 84 162 38 112 31 113 0.70 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 1_8 - 245 TIGR03534 TIGR03534 253 4.5e-07 20.8 0.0 2 2 0.0043 0.17 2.5 0.0 196 219 120 143 117 160 0.86 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 1_3 - 235 Dynamin_N PF00350.18 168 0.00029 12.2 0.4 1 1 5.5e-05 0.0021 9.4 0.4 1 134 30 186 30 209 0.56 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_3 - 235 AAA_25 PF13481.1 194 2.6e-05 15.2 0.0 1 1 1.6e-06 6.1e-05 14.0 0.0 31 55 25 49 7 71 0.78 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_8 - 245 Methyltransf_26 PF13659.1 117 1.8e-15 48.6 0.0 1 1 6.6e-17 2.6e-15 48.1 0.0 1 115 43 143 43 145 0.93 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 1_8 - 245 Methyltransf_9 PF08003.6 315 2.3e-13 41.0 0.0 1 1 9e-15 3.5e-13 40.4 0.0 103 217 30 141 27 151 0.85 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 1_1 - 79 HTH_Tnp_4 PF13613.1 53 7.6e-06 17.1 0.5 1 1 7e-06 3.9e-05 14.8 0.5 30 49 41 60 17 63 0.80 # 1 # 237 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 3_1 - 79 HTH_Tnp_4 PF13613.1 53 8e-06 17.0 0.5 1 1 7.7e-06 4.3e-05 14.6 0.5 30 49 41 60 17 63 0.80 # 1 # 237 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.329 2_1 - 62 HTH_Tnp_4 PF13613.1 53 1.1e-05 16.6 0.5 1 1 1.1e-05 6.2e-05 14.1 0.5 30 49 41 60 17 61 0.79 # 3 # 188 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_12 - 112 HTH_Tnp_4 PF13613.1 53 2.8e-05 15.3 0.0 1 1 9.1e-06 5e-05 14.4 0.0 24 45 24 45 17 48 0.88 # 8518 # 8853 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 3_4 - 193 HTH_Tnp_4 PF13613.1 53 9.1e-05 13.6 0.0 1 1 3.5e-05 0.00019 12.6 0.0 24 44 165 185 159 186 0.89 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 6_1 - 188 HTH_Tnp_4 PF13613.1 53 0.00016 12.9 0.1 1 1 5.2e-05 0.00029 12.0 0.1 30 49 4 23 4 26 0.94 # 2 # 565 # 1 # ID=6_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.353 7_1 - 165 HTH_Tnp_4 PF13613.1 53 0.00026 12.1 0.1 1 1 0.0001 0.00057 11.1 0.1 30 49 20 39 20 42 0.94 # 3 # 497 # 1 # ID=7_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.341 1_3 - 235 MMR_HSR1 PF01926.18 116 3.7e-05 15.3 0.5 1 1 2.8e-06 0.00011 13.8 0.5 2 56 30 89 29 223 0.62 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_8 - 245 PCMT PF01135.14 210 1.9e-06 19.1 0.0 1 1 9.3e-08 3.6e-06 18.2 0.0 41 174 4 144 1 161 0.63 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 1_12 - 112 RPA_C PF08784.6 102 0.00022 13.3 0.0 1 1 9e-06 0.00035 12.6 0.0 50 94 5 48 2 48 0.88 # 8518 # 8853 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 1_3 - 235 NTPase_1 PF03266.10 168 0.00029 12.1 1.4 1 2 4.8e-05 0.0019 9.5 0.2 2 22 30 50 29 70 0.82 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_3 - 235 NTPase_1 PF03266.10 168 0.00029 12.1 1.4 2 2 0.013 0.49 1.6 0.0 85 145 142 200 104 219 0.71 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_5 - 217 HrcA_DNA-bdg PF03444.10 79 3.3e-05 14.9 0.0 1 1 2.2e-06 8.5e-05 13.6 0.0 2 50 19 68 18 75 0.90 # 3271 # 3921 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.296 1_12 - 112 GntR PF00392.16 64 0.00013 13.0 0.0 1 1 1.3e-05 0.00025 12.1 0.0 22 53 18 48 10 60 0.80 # 8518 # 8853 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 3_4 - 193 GntR PF00392.16 64 0.00027 12.0 0.0 1 1 2.7e-05 0.00053 11.0 0.0 23 51 162 187 151 188 0.84 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 5_1 - 246 Glu_synthase PF01645.12 368 0.075 3.4 9.7 1 1 6.8e-05 0.0026 8.2 3.6 7 71 96 159 88 164 0.84 # 70 # 807 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=12bp;gc_cont=0.279 1_3 - 235 Guanylate_kin PF00625.16 183 0.00024 12.2 0.1 1 1 1e-05 0.00041 11.4 0.1 6 69 31 93 26 196 0.61 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_8 - 245 Methyltransf_8 PF05148.10 219 3.4e-06 18.4 0.1 1 1 1.6e-07 6.2e-06 17.5 0.1 105 155 89 140 32 194 0.78 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 1_8 - 245 TPMT PF05724.6 218 7.8e-05 13.7 0.0 1 1 6e-06 0.00023 12.2 0.0 36 86 41 91 31 154 0.82 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 1_3 - 235 AAA_11 PF13086.1 236 0.00018 12.7 0.0 1 1 1.2e-05 0.00046 11.3 0.0 14 113 24 122 12 182 0.60 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_7 - 290 NTP_transf_2 PF01909.18 93 8.4e-15 46.6 0.1 1 1 6.3e-16 2.5e-14 45.1 0.1 1 90 6 114 6 117 0.91 # 4291 # 5160 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_3 - 235 AAA_15 PF13175.1 415 1.1e-09 29.3 0.8 1 2 1.7e-05 0.00066 10.3 0.4 17 43 21 63 2 127 0.63 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_3 - 235 AAA_15 PF13175.1 415 1.1e-09 29.3 0.8 2 2 1.1e-07 4.2e-06 17.5 0.4 320 410 111 188 67 189 0.75 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_12 - 112 Fe_dep_repress PF01325.14 60 0.00018 13.0 0.0 1 1 7.5e-06 0.00029 12.4 0.0 18 50 15 47 8 50 0.91 # 8518 # 8853 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 2_8 - 138 Dala_Dala_lig_N PF01820.16 117 0.00015 13.7 0.1 1 1 4.8e-06 0.00019 13.4 0.1 17 70 15 70 5 109 0.63 # 5511 # 5924 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_5 - 217 TetR_N PF00440.18 47 3e-17 53.7 0.2 1 1 4.9e-18 6.4e-17 52.6 0.2 2 44 27 69 26 71 0.95 # 3271 # 3921 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.296 2_6 - 181 TetR_N PF00440.18 47 0.00015 13.0 0.1 1 1 3.2e-05 0.00041 11.6 0.0 18 36 159 177 156 177 0.94 # 3390 # 3932 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.262 3_4 - 193 TetR_N PF00440.18 47 0.00019 12.7 0.1 1 1 6.2e-05 0.0008 10.7 0.0 16 36 160 180 158 180 0.92 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_8 - 245 TehB PF03848.9 192 4e-07 20.9 0.0 1 1 1.2e-08 4.8e-07 20.7 0.0 31 131 43 140 8 195 0.79 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 7_1 - 165 rve PF00665.21 120 5.3e-19 60.1 0.8 1 1 8.6e-20 1.7e-18 58.5 0.4 2 117 45 153 44 155 0.93 # 3 # 497 # 1 # ID=7_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.341 6_1 - 188 rve PF00665.21 120 1.5e-17 55.4 0.3 1 1 1.2e-18 2.2e-17 54.9 0.3 2 117 29 137 28 139 0.93 # 2 # 565 # 1 # ID=6_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.353 2_1 - 62 HTH_Tnp_1 PF01527.15 76 3e-05 15.6 0.1 1 1 2.9e-06 3.8e-05 15.2 0.1 24 47 29 54 5 59 0.70 # 3 # 188 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 7_1 - 165 HTH_Tnp_1 PF01527.15 76 0.00024 12.7 3.5 1 2 4.3e-05 0.00056 11.5 0.2 25 47 9 33 4 48 0.84 # 3 # 497 # 1 # ID=7_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.341 7_1 - 165 HTH_Tnp_1 PF01527.15 76 0.00024 12.7 3.5 2 2 0.092 1.2 0.8 0.4 38 55 77 94 51 120 0.60 # 3 # 497 # 1 # ID=7_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.341 3_1 - 79 HTH_Tnp_1 PF01527.15 76 0.00067 11.3 2.6 1 1 3.9e-05 0.00051 11.6 0.5 24 47 29 54 5 69 0.74 # 1 # 237 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.329 1_3 - 235 MobB PF03205.9 140 4.6e-06 18.0 0.1 1 1 2.3e-07 9e-06 17.0 0.1 2 36 29 63 28 70 0.86 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 3_4 - 193 HTH_38 PF13936.1 44 3.1e-06 18.3 0.0 1 1 4.2e-07 8.2e-06 17.0 0.0 6 41 146 181 142 183 0.86 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 2_1 - 62 HTH_38 PF13936.1 44 0.00018 12.7 0.0 1 1 2.2e-05 0.00043 11.5 0.0 30 41 40 51 25 53 0.88 # 3 # 188 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_8 - 245 Methyltransf_23 PF13489.1 161 7.3e-23 72.6 0.0 1 1 2.7e-24 1.1e-22 72.1 0.0 12 134 33 161 25 175 0.82 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 1_5 - 217 Sigma70_r4 PF04545.11 50 4.3e-05 14.4 0.0 1 1 4.7e-06 9.1e-05 13.4 0.0 2 37 16 58 15 61 0.94 # 3271 # 3921 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.296 2_6 - 181 Sigma70_r4 PF04545.11 50 0.00027 11.9 0.0 1 1 3.1e-05 0.0006 10.7 0.0 12 36 149 173 145 176 0.91 # 3390 # 3932 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.262 1_10 - 181 Acetyltransf_1 PF00583.19 83 1.2e-22 71.4 0.0 1 1 4.5e-24 1.8e-22 70.9 0.0 2 83 78 154 77 154 0.98 # 6813 # 7355 # 1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.378 3_5 - 127 HTH_27 PF13463.1 68 0.00025 13.0 0.0 1 2 4e-05 0.0016 10.4 0.0 4 54 11 64 8 70 0.92 # 1820 # 2200 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.255 3_5 - 127 HTH_27 PF13463.1 68 0.00025 13.0 0.0 2 2 0.058 2.3 0.3 0.0 6 29 97 121 94 121 0.83 # 1820 # 2200 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.255 3_6 - 586 SprT-like PF10263.4 157 4.5e-05 14.7 0.0 1 1 2.8e-06 0.00011 13.5 0.0 7 71 145 206 140 209 0.85 # 2190 # 3947 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.263 3_4 - 193 HTH_Tnp_IS630 PF01710.11 120 5.8e-05 14.4 0.0 1 1 2.8e-06 0.00011 13.5 0.0 17 47 159 189 145 192 0.83 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_8 - 245 TIGR01934 TIGR01934 223 1.3e-18 58.4 0.0 1 1 4.3e-20 1.7e-18 58.0 0.0 32 141 35 141 27 191 0.87 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 3_4 - 193 HTH_40 PF14493.1 91 3.2e-05 15.7 0.0 1 1 3.4e-06 6.6e-05 14.7 0.0 8 41 155 188 153 191 0.89 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 2_6 - 181 HTH_40 PF14493.1 91 0.00048 12.0 3.5 1 2 0.082 1.6 0.7 0.1 30 65 75 110 66 125 0.73 # 3390 # 3932 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.262 2_6 - 181 HTH_40 PF14493.1 91 0.00048 12.0 3.5 2 2 3.9e-05 0.00075 11.3 0.1 4 34 147 178 144 180 0.90 # 3390 # 3932 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.262 7_1 - 165 DDE_3 PF13358.1 146 1.6e-06 19.5 0.3 1 1 1.2e-07 2.4e-06 18.9 0.2 25 95 52 123 30 161 0.76 # 3 # 497 # 1 # ID=7_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.341 6_1 - 188 DDE_3 PF13358.1 146 2.6e-06 18.8 0.3 1 1 1.9e-07 3.7e-06 18.3 0.3 26 95 37 107 19 169 0.76 # 2 # 565 # 1 # ID=6_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.353 3_1 - 79 HTH_Tnp_Tc3_2 PF01498.13 72 0.00023 12.8 0.2 1 1 2.9e-05 0.00057 11.6 0.2 14 41 26 53 22 75 0.87 # 1 # 237 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.329 2_1 - 62 HTH_Tnp_Tc3_2 PF01498.13 72 0.00032 12.4 0.0 1 1 2.1e-05 0.00041 12.0 0.0 14 40 26 52 18 55 0.89 # 3 # 188 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 7_1 - 165 DDE_Tnp_IS66 PF03050.9 271 1.3e-07 22.6 3.5 1 2 3.9e-08 3.8e-07 21.1 1.0 19 97 3 75 1 114 0.76 # 3 # 497 # 1 # ID=7_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.341 7_1 - 165 DDE_Tnp_IS66 PF03050.9 271 1.3e-07 22.6 3.5 2 2 0.035 0.34 1.6 0.0 243 260 142 159 136 165 0.82 # 3 # 497 # 1 # ID=7_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.341 3_1 - 79 DDE_Tnp_IS66 PF03050.9 271 5.2e-06 17.4 0.0 1 1 5.3e-07 5.2e-06 17.4 0.0 13 59 18 64 7 79 0.74 # 1 # 237 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.329 2_1 - 62 DDE_Tnp_IS66 PF03050.9 271 1.1e-05 16.3 0.0 1 1 1.1e-06 1.1e-05 16.3 0.0 12 53 17 58 7 62 0.81 # 3 # 188 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_1 - 79 DDE_Tnp_IS66 PF03050.9 271 1.6e-05 15.8 0.0 1 1 1.6e-06 1.6e-05 15.8 0.0 13 59 18 64 7 79 0.74 # 1 # 237 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 3_4 - 193 TrmB PF01978.14 68 1.1e-06 19.9 0.0 1 1 1.9e-07 2.5e-06 18.8 0.0 22 49 160 187 145 189 0.82 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_12 - 112 TrmB PF01978.14 68 6e-05 14.3 0.0 1 1 5.6e-06 7.3e-05 14.1 0.0 23 51 20 48 7 76 0.83 # 8518 # 8853 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 2_6 - 181 TrmB PF01978.14 68 9.6e-05 13.7 0.0 1 1 2.3e-05 0.00029 12.1 0.0 21 44 156 179 151 180 0.89 # 3390 # 3932 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.262 1_3 - 235 ABC_tran PF00005.22 137 1.1e-33 108.0 0.0 1 1 4.4e-35 1.7e-33 107.4 0.0 2 136 18 158 17 159 0.87 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_10 - 181 TIGR01575 TIGR01575 132 3.7e-15 47.5 0.2 1 1 1.3e-16 4.9e-15 47.2 0.2 32 126 73 167 49 174 0.85 # 6813 # 7355 # 1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.378 1_8 - 245 TIGR00536 TIGR00536 286 1.3e-05 15.6 0.0 1 1 6.8e-07 2.7e-05 14.6 0.0 106 156 34 83 28 96 0.84 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 3_6 - 586 Peptidase_M48 PF01435.13 226 0.0002 12.5 0.0 1 1 1.1e-05 0.00043 11.4 0.0 64 124 173 230 116 268 0.77 # 2190 # 3947 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.263 1_12 - 112 Rrf2 PF02082.15 83 5.2e-07 21.4 0.0 1 1 1.9e-08 7.3e-07 20.9 0.0 16 67 10 60 2 63 0.83 # 8518 # 8853 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 1_10 - 181 Acetyltransf_9 PF13527.1 127 1.6e-05 16.4 0.0 1 1 1.1e-06 4.1e-05 15.0 0.0 40 126 71 155 46 156 0.75 # 6813 # 7355 # 1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.378 1_8 - 245 Methyltransf_18 PF12847.2 112 5e-21 67.0 0.0 1 1 1.8e-22 6.8e-21 66.6 0.0 1 110 42 142 42 144 0.93 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 1_3 - 235 SMC_N PF02463.14 220 2.2e-07 21.8 0.9 1 1 2.9e-08 1.1e-06 19.5 0.9 5 211 2 202 1 208 0.74 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 3_4 - 193 Trp_repressor PF01371.14 88 2.8e-05 15.6 1.3 1 2 0.057 2.2 -0.1 0.1 3 33 87 117 85 124 0.83 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 3_4 - 193 Trp_repressor PF01371.14 88 2.8e-05 15.6 1.3 2 2 2.8e-06 0.00011 13.8 0.1 39 79 150 190 146 192 0.89 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_3 - 235 AAA_29 PF13555.1 62 8.2e-06 16.9 0.1 1 1 4.3e-07 1.7e-05 16.0 0.1 16 42 21 46 15 49 0.80 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_3 - 235 AAA_28 PF13521.1 163 0.00034 12.2 0.0 1 1 1.7e-05 0.00068 11.2 0.0 4 18 32 46 29 85 0.84 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 4_3 - 319 RepA_N PF06970.6 76 1.7e-34 109.1 4.6 1 1 1.3e-35 5e-34 107.6 4.6 1 76 12 87 12 87 0.99 # 700 # 1656 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.282 1_3 - 235 AAA_5 PF07728.9 139 1.7e-05 16.2 0.0 1 3 1e-05 0.0004 11.7 0.0 4 21 32 49 29 88 0.80 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_3 - 235 AAA_5 PF07728.9 139 1.7e-05 16.2 0.0 2 3 0.075 2.9 -0.8 0.0 40 73 123 156 106 159 0.81 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_3 - 235 AAA_5 PF07728.9 139 1.7e-05 16.2 0.0 3 3 0.022 0.86 0.9 0.0 69 89 188 208 160 220 0.77 # 1425 # 2129 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_8 - 245 Methyltransf_25 PF13649.1 101 1.5e-15 49.1 0.0 1 1 5.5e-17 2.1e-15 48.5 0.0 1 101 46 137 46 137 0.88 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 1_9 - 303 Adenyl_transf PF04439.7 282 5.5e-141 460.0 7.4 1 1 1.6e-142 6.2e-141 459.8 7.4 1 282 1 280 1 280 1.00 # 5908 # 6816 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 1_8 - 245 NodS PF05401.6 201 7.8e-07 20.2 0.0 1 1 3.1e-08 1.2e-06 19.6 0.0 46 145 45 142 32 150 0.85 # 5141 # 5875 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.382 4_3 - 319 DUF948 PF06103.6 90 0.00035 12.0 2.4 1 2 0.00012 0.0046 8.5 0.2 15 59 60 106 59 119 0.81 # 700 # 1656 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.282 4_3 - 319 DUF948 PF06103.6 90 0.00035 12.0 2.4 2 2 0.0081 0.32 2.6 0.1 15 41 262 288 236 306 0.80 # 700 # 1656 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.282 7_1 - 165 HTH_32 PF13565.1 77 1.2e-08 27.3 0.7 1 2 2.7e-06 1.7e-05 17.2 0.3 49 76 5 29 2 30 0.87 # 3 # 497 # 1 # ID=7_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.341 7_1 - 165 HTH_32 PF13565.1 77 1.2e-08 27.3 0.7 2 2 0.0016 0.011 8.3 0.0 27 63 113 150 78 161 0.72 # 3 # 497 # 1 # ID=7_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.341 3_1 - 79 HTH_32 PF13565.1 77 1.1e-06 21.0 0.1 1 1 2.5e-07 1.6e-06 20.5 0.1 48 76 25 50 7 51 0.85 # 1 # 237 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.329 2_1 - 62 HTH_32 PF13565.1 77 1.1e-06 21.0 0.1 1 1 1.8e-07 1.2e-06 20.9 0.1 48 76 25 50 7 51 0.85 # 3 # 188 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_1 - 79 HTH_32 PF13565.1 77 6.6e-06 18.5 0.0 1 1 1.5e-06 9.6e-06 18.0 0.0 48 76 25 50 7 51 0.86 # 1 # 237 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 3_4 - 193 HTH_32 PF13565.1 77 1.2e-05 17.6 0.2 1 1 4e-06 2.6e-05 16.6 0.2 19 77 131 181 118 181 0.80 # 978 # 1556 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 6_1 - 188 HTH_32 PF13565.1 77 0.0002 13.8 0.7 1 2 0.0045 0.029 6.8 0.3 66 76 3 13 1 14 0.78 # 2 # 565 # 1 # ID=6_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.353 6_1 - 188 HTH_32 PF13565.1 77 0.0002 13.8 0.7 2 2 0.017 0.11 5.0 0.0 30 63 101 134 62 146 0.73 # 2 # 565 # 1 # ID=6_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.353 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/2c0d0a9a-55ce-4bb5-b696-a4e9623e1918 # Target file: checkm_output/bins/pGCA_000011925.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000011925.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2c0d0a9a-55ce-4bb5-b696-a4e9623e1918 checkm_output/bins/pGCA_000011925.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:51:35 2021 # [ok]