# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_2 - 159 RepL PF05732.6 165 7.5e-73 233.3 4.8 1 1 6.2e-74 8.7e-73 233.1 4.8 1 148 1 148 1 156 0.98 # 1501 # 1977 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_7 - 156 MarR_2 PF12802.2 62 9e-13 38.0 0.0 1 1 2.1e-13 2.9e-12 36.3 0.0 2 61 35 92 34 93 0.95 # 4561 # 5028 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 2_1 - 245 Methyltransf_11 PF08241.7 95 1.5e-06 18.8 0.0 1 1 2.1e-07 3e-06 17.9 0.0 2 60 36 94 35 99 0.91 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 2_2 - 159 HTH_Crp_2 PF13545.1 76 3e-07 20.4 0.2 1 1 3.4e-08 4.8e-07 19.7 0.2 30 67 78 115 60 122 0.88 # 1501 # 1977 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 2_1 - 245 Methyltransf_4 PF02390.12 197 1.1e-06 17.9 1.7 1 2 8.4e-08 1.2e-06 17.8 0.3 20 97 31 101 4 104 0.77 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 2_1 - 245 Methyltransf_4 PF02390.12 197 1.1e-06 17.9 1.7 2 2 0.093 1.3 -1.9 0.1 136 159 187 207 168 229 0.62 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 2_1 - 245 Methyltransf_31 PF13847.1 152 9.3e-06 15.4 3.1 1 1 1.1e-06 1.6e-05 14.7 3.0 2 76 29 98 28 225 0.74 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 2_2 - 159 FUR PF01475.14 120 3.7e-06 17.0 0.1 1 2 0.0067 0.093 2.8 0.0 78 102 12 36 2 50 0.71 # 1501 # 1977 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 2_2 - 159 FUR PF01475.14 120 3.7e-06 17.0 0.1 2 2 9e-06 0.00013 12.1 0.1 12 60 59 108 53 111 0.76 # 1501 # 1977 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_3 - 67 ATP-synt_B PF00430.13 132 0.0013 8.7 2.8 1 2 0.0054 0.075 3.0 0.8 6 21 8 23 4 33 0.69 # 1706 # 1906 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.259 1_3 - 67 ATP-synt_B PF00430.13 132 0.0013 8.7 2.8 2 2 0.00058 0.0081 6.1 0.0 12 30 37 55 35 61 0.91 # 1706 # 1906 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.259 3_2 - 335 Ribosomal_L11 PF00298.14 69 9.8e-05 12.7 1.5 1 1 2.1e-05 0.0003 11.1 0.1 16 43 23 51 17 62 0.91 # 719 # 1723 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.300 2_2 - 159 HTH_36 PF13730.1 55 7.5e-05 13.0 0.0 1 1 1e-05 0.00014 12.2 0.0 26 54 77 105 61 106 0.84 # 1501 # 1977 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 2_1 - 245 RrnaAD PF00398.15 262 5e-75 242.0 4.2 1 1 3.9e-76 5.5e-75 241.8 4.2 1 262 1 244 1 244 0.97 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 2_1 - 245 MTS PF05175.9 170 1.2e-05 14.8 0.0 1 1 1.3e-06 1.9e-05 14.2 0.0 25 113 24 109 14 125 0.83 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 2_1 - 245 DOT1 PF08123.8 205 8.3e-06 15.3 1.3 1 2 3.5e-06 4.9e-05 12.8 0.0 29 91 17 77 13 116 0.83 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 2_1 - 245 DOT1 PF08123.8 205 8.3e-06 15.3 1.3 2 2 0.016 0.22 0.9 0.6 78 133 180 229 169 236 0.57 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_7 - 156 HTH_1 PF00126.22 60 6.9e-07 19.2 0.0 1 1 9.4e-08 1.3e-06 18.3 0.0 20 60 59 103 59 103 0.87 # 4561 # 5028 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_7 - 156 HTH_34 PF13601.1 80 1.2e-07 21.9 0.5 1 1 1.5e-08 2.1e-07 21.1 0.4 2 67 40 104 39 127 0.92 # 4561 # 5028 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_7 - 156 MarR PF01047.17 59 2.9e-17 52.4 0.1 1 1 7.2e-18 5e-17 51.6 0.1 1 59 36 94 36 94 0.99 # 4561 # 5028 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 2_2 - 159 MarR PF01047.17 59 2.2e-05 14.3 0.3 1 1 5.3e-06 3.7e-05 13.6 0.3 19 50 78 109 64 111 0.86 # 1501 # 1977 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 2_2 - 159 HTH_20 PF12840.2 61 1e-05 15.5 0.0 1 1 1.2e-06 1.7e-05 14.8 0.0 25 56 77 108 65 111 0.93 # 1501 # 1977 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_7 - 156 HTH_5 PF01022.15 47 8.1e-05 12.5 0.0 1 1 1e-05 0.00014 11.7 0.0 21 45 58 82 56 84 0.95 # 4561 # 5028 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_7 - 156 HTH_24 PF13412.1 48 6e-12 35.0 0.1 1 1 1.9e-12 1.3e-11 33.9 0.1 2 47 37 82 36 83 0.95 # 4561 # 5028 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 2_2 - 159 HTH_24 PF13412.1 48 4.3e-08 22.7 1.5 1 2 0.012 0.082 2.6 0.0 5 21 57 73 55 77 0.89 # 1501 # 1977 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 2_2 - 159 HTH_24 PF13412.1 48 4.3e-08 22.7 1.5 2 2 8.3e-08 5.8e-07 19.1 0.4 18 48 77 107 76 107 0.96 # 1501 # 1977 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_7 - 156 HTH_AsnC-type PF13404.1 42 5e-05 13.0 0.0 1 1 6.1e-06 8.5e-05 12.3 0.0 8 41 43 76 41 77 0.87 # 4561 # 5028 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_7 - 156 HTH_10 PF04967.7 53 2.5e-05 14.0 0.1 1 1 3.8e-06 5.3e-05 13.0 0.1 24 50 53 79 48 81 0.88 # 4561 # 5028 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_7 - 156 DUF2250 PF10007.4 93 0.00038 10.6 6.3 1 1 0.00014 0.002 8.2 2.4 10 88 40 104 31 106 0.65 # 4561 # 5028 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_7 - 156 HTH_DeoR PF08220.7 57 7e-05 12.5 0.1 1 1 9.8e-06 0.00014 11.6 0.1 4 41 42 79 40 85 0.84 # 4561 # 5028 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_9 - 289 Rep_3 PF01051.16 222 1.2e-47 152.5 14.7 1 1 1.1e-48 1.5e-47 152.1 14.7 3 222 4 218 2 218 0.93 # 6771 # 7637 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_7 - 156 HxlR PF01638.12 91 6e-07 19.3 0.3 1 1 9.7e-08 1.4e-06 18.1 0.2 24 85 58 118 39 124 0.80 # 4561 # 5028 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 2_2 - 159 HTH_23 PF13384.1 50 9.2e-05 12.3 0.0 1 1 1.3e-05 0.00018 11.4 0.0 19 45 78 103 68 108 0.88 # 1501 # 1977 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_7 - 156 HTH_45 PF14947.1 77 2e-05 14.5 1.1 1 1 3.4e-06 4.8e-05 13.4 1.1 11 65 43 105 40 125 0.77 # 4561 # 5028 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_1 - 173 RRF PF01765.14 165 0.0002 11.0 7.4 1 1 1.9e-05 0.00026 10.6 7.4 83 164 2 85 1 86 0.81 # 204 # 722 # -1 # ID=1_1;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.322 1_7 - 156 HTH_6 PF01418.12 77 1.8e-05 14.6 0.3 1 2 1.8e-05 0.00025 11.0 0.0 19 58 41 76 30 89 0.81 # 4561 # 5028 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_7 - 156 HTH_6 PF01418.12 77 1.8e-05 14.6 0.3 2 2 0.016 0.22 1.5 0.0 19 34 133 148 117 153 0.79 # 4561 # 5028 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_7 - 156 HTH_11 PF08279.7 55 7.1e-10 28.6 0.3 1 1 2.6e-10 1.8e-09 27.3 0.1 2 43 40 80 39 96 0.85 # 4561 # 5028 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 2_2 - 159 HTH_11 PF08279.7 55 4.9e-05 13.1 0.2 1 1 1.3e-05 9.4e-05 12.2 0.2 16 43 77 104 61 112 0.82 # 1501 # 1977 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 2_2 - 159 HTH_28 PF13518.1 52 1.3e-05 15.4 0.0 1 1 2.5e-06 3.5e-05 14.0 0.0 1 41 56 105 56 111 0.82 # 1501 # 1977 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 2_1 - 245 PCMT PF01135.14 210 1.8e-06 17.7 0.0 1 1 3.8e-07 5.3e-06 16.2 0.0 53 126 10 80 3 86 0.86 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_7 - 156 PhoD PF09423.5 453 6.3e-05 11.7 0.0 1 2 0.00015 0.0021 6.7 0.0 178 214 24 60 5 79 0.74 # 4561 # 5028 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_7 - 156 PhoD PF09423.5 453 6.3e-05 11.7 0.0 2 2 0.0016 0.023 3.3 0.0 352 405 91 143 87 152 0.82 # 4561 # 5028 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_7 - 156 GntR PF00392.16 64 3.8e-06 16.5 0.0 1 1 1.1e-06 7.7e-06 15.5 0.0 21 55 50 83 42 89 0.86 # 4561 # 5028 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 2_2 - 159 GntR PF00392.16 64 3.6e-05 13.4 0.0 1 1 1.1e-05 7.5e-05 12.4 0.0 17 59 69 111 57 112 0.87 # 1501 # 1977 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_9 - 289 RepC PF06504.6 283 5.4e-06 15.6 0.0 1 1 6e-07 8.4e-06 15.0 0.0 93 216 25 150 15 178 0.85 # 6771 # 7637 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_7 - 156 Fe_dep_repress PF01325.14 60 8.9e-11 31.8 0.3 1 1 1.4e-11 1.9e-10 30.7 0.1 15 53 45 83 42 88 0.92 # 4561 # 5028 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 2_1 - 245 Methyltransf_23 PF13489.1 161 6.8e-06 16.0 0.0 1 1 1.4e-06 1.9e-05 14.6 0.0 11 67 17 78 8 119 0.71 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_7 - 156 HTH_27 PF13463.1 68 5.4e-11 32.9 0.0 1 1 1e-11 1.4e-10 31.6 0.0 24 68 58 102 36 102 0.88 # 4561 # 5028 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 2_2 - 159 FaeA PF04703.7 62 8.9e-05 12.8 0.1 1 1 1.1e-05 0.00015 12.1 0.1 13 47 74 108 56 112 0.77 # 1501 # 1977 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_7 - 156 TrmB PF01978.14 68 4.7e-07 19.7 0.1 1 1 8.4e-08 1.2e-06 18.4 0.1 19 56 49 86 33 103 0.81 # 4561 # 5028 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_7 - 156 Rrf2 PF02082.15 83 6.5e-05 13.2 0.2 1 1 9.5e-06 0.00013 12.2 0.1 14 55 41 82 29 85 0.80 # 4561 # 5028 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 2_1 - 245 Methyltransf_18 PF12847.2 112 1.4e-08 25.5 0.0 1 1 1.4e-09 2e-08 25.0 0.0 3 66 32 91 30 151 0.76 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 2_1 - 245 Methyltransf_25 PF13649.1 101 6.1e-05 13.6 0.0 1 1 9.3e-06 0.00013 12.5 0.0 1 69 34 96 34 121 0.83 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 2_1 - 245 NodS PF05401.6 201 4.4e-06 16.3 0.0 1 1 5e-07 7e-06 15.6 0.0 44 107 31 94 9 115 0.84 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 2_1 - 245 TIGR00755 TIGR00755 256 2.7e-48 154.3 1.2 1 1 2.4e-49 3.4e-48 153.9 1.2 6 254 7 237 3 239 0.88 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/9420f36a-eace-468b-91c6-15d44de5145f # Target file: checkm_output/bins/pGCA_000009865.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000009865.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9420f36a-eace-468b-91c6-15d44de5145f checkm_output/bins/pGCA_000009865.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:51:27 2021 # [ok]