# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_1 - 335 Ribosomal_L11 PF00298.14 69 0.00012 12.4 2.0 1 1 2.1e-05 0.00029 11.2 0.1 16 43 23 51 16 62 0.91 # 756 # 1760 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.300 1_1 - 225 MULE PF10551.4 93 3e-05 14.4 0.0 1 1 4.8e-06 6.7e-05 13.2 0.0 19 77 92 147 64 161 0.84 # 57 # 731 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 1_1 - 225 HEM4 PF02602.10 231 7.5e-05 12.1 0.0 1 1 8.9e-06 0.00013 11.4 0.0 125 154 24 53 9 70 0.80 # 57 # 731 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 1_1 - 225 AAA_17 PF13207.1 121 1.3e-06 19.4 1.3 1 1 1.4e-07 1.9e-06 18.9 1.3 23 113 24 122 20 206 0.85 # 57 # 731 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 1_1 - 225 DDE_Tnp_IS240 PF13610.1 140 1.1e-44 141.9 2.7 1 1 1.1e-45 1.6e-44 141.4 2.7 3 139 72 203 70 204 0.95 # 57 # 731 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 3_2 - 289 AsnA PF03590.10 244 1.5e-05 14.6 0.7 1 1 2.3e-06 3.2e-05 13.5 0.7 80 141 189 250 101 262 0.76 # 1965 # 2831 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.258 1_1 - 225 HTH_23 PF13384.1 50 1.3e-05 15.0 3.8 1 2 0.059 0.83 -0.3 0.0 18 27 26 35 18 36 0.82 # 57 # 731 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 1_1 - 225 HTH_23 PF13384.1 50 1.3e-05 15.0 3.8 2 2 2.7e-06 3.8e-05 13.5 0.7 28 41 41 54 40 69 0.93 # 57 # 731 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 3_2 - 289 GyrI-like PF06445.10 155 7.3e-29 90.9 1.9 1 1 8.6e-30 1.2e-28 90.2 1.9 1 154 126 286 126 287 0.94 # 1965 # 2831 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.258 2_4 - 133 Homeobox PF00046.24 57 6.7e-06 15.9 1.5 1 3 0.028 0.39 0.6 0.0 22 36 17 31 15 43 0.83 # 2672 # 3070 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.361 2_4 - 133 Homeobox PF00046.24 57 6.7e-06 15.9 1.5 2 3 4.9e-06 6.8e-05 12.7 0.1 22 52 66 99 64 104 0.85 # 2672 # 3070 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.361 2_4 - 133 Homeobox PF00046.24 57 6.7e-06 15.9 1.5 3 3 0.056 0.78 -0.3 0.0 8 22 106 120 99 131 0.70 # 2672 # 3070 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.361 1_1 - 225 Arg_repressor PF01316.16 70 2.6e-05 13.9 0.0 1 1 5.7e-06 7.9e-05 12.4 0.0 24 49 30 55 25 74 0.75 # 57 # 731 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 1_1 - 225 HTH_28 PF13518.1 52 1.2e-05 15.4 0.4 1 1 4e-06 5.6e-05 13.3 0.4 15 36 31 54 17 55 0.80 # 57 # 731 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 3_2 - 289 Cass2 PF14526.1 150 6.1e-17 52.2 3.7 1 1 6.8e-18 9.5e-17 51.5 3.7 1 150 129 286 129 286 0.88 # 1965 # 2831 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.258 1_1 - 225 HTH_Tnp_4 PF13613.1 53 4.5e-05 13.2 0.4 1 1 1.1e-05 0.00015 11.5 0.4 30 49 41 60 18 63 0.84 # 57 # 731 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 3_2 - 289 HTH_AraC PF00165.18 42 3.2e-09 26.7 0.1 1 2 0.00025 0.0036 7.4 0.0 1 29 15 43 15 56 0.75 # 1965 # 2831 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.258 3_2 - 289 HTH_AraC PF00165.18 42 3.2e-09 26.7 0.1 2 2 2.6e-07 3.7e-06 16.9 0.0 4 40 66 102 64 104 0.94 # 1965 # 2831 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.258 2_4 - 133 Seryl_tRNA_N PF02403.17 108 8.4e-05 12.8 4.5 1 2 0.006 0.084 3.1 0.0 86 107 33 54 3 55 0.83 # 2672 # 3070 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.361 2_4 - 133 Seryl_tRNA_N PF02403.17 108 8.4e-05 12.8 4.5 2 2 5e-05 0.00069 9.8 2.3 34 89 69 130 56 132 0.68 # 2672 # 3070 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.361 1_1 - 225 rve PF00665.21 120 1.1e-18 57.6 0.5 1 2 0.041 0.58 0.5 0.0 83 102 30 49 12 52 0.89 # 57 # 731 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 1_1 - 225 rve PF00665.21 120 1.1e-18 57.6 0.5 2 2 5.4e-19 7.6e-18 55.0 0.3 2 117 66 174 65 176 0.93 # 57 # 731 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 1_1 - 225 DDE_3 PF13358.1 146 1.3e-06 18.3 0.3 1 1 1.9e-07 2.7e-06 17.3 0.3 26 95 74 143 60 201 0.76 # 57 # 731 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 1_1 - 225 DDE_Tnp_IS66 PF03050.9 271 9.7e-08 21.6 3.4 1 2 1.8e-08 2.6e-07 20.2 0.9 16 97 21 96 7 134 0.76 # 57 # 731 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 1_1 - 225 DDE_Tnp_IS66 PF03050.9 271 9.7e-08 21.6 3.4 2 2 0.008 0.11 1.7 0.1 243 264 163 184 156 190 0.81 # 57 # 731 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 3_2 - 289 HTH_18 PF12833.2 81 3.6e-11 33.3 0.0 1 1 4.2e-12 5.9e-11 32.6 0.0 5 78 32 102 20 105 0.94 # 1965 # 2831 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.258 3_2 - 289 Chal_sti_synt_N PF00195.14 227 0.00011 11.6 0.2 1 1 1.5e-05 0.00021 10.7 0.1 58 133 139 210 124 217 0.86 # 1965 # 2831 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.258 2_5 - 306 Adenyl_transf PF04439.7 282 1.4e-135 440.8 12.4 1 1 1.2e-136 1.6e-135 440.6 12.4 1 282 24 305 24 305 1.00 # 3340 # 4257 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.255 1_1 - 225 HTH_32 PF13565.1 77 1.2e-08 25.9 0.6 1 2 3.2e-07 4.4e-06 17.6 0.1 49 76 26 50 11 51 0.86 # 57 # 731 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 1_1 - 225 HTH_32 PF13565.1 77 1.2e-08 25.9 0.6 2 2 0.0011 0.016 6.3 0.0 29 63 136 171 99 183 0.73 # 57 # 731 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/93531aea-ee8d-40b0-8456-96c13e7adf1e # Target file: checkm_output/bins/pGCA_000009585.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000009585.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/93531aea-ee8d-40b0-8456-96c13e7adf1e checkm_output/bins/pGCA_000009585.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:51:12 2021 # [ok]