# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_30 - 135 SPOUT_MTase PF02590.12 155 6.2e-52 166.6 0.1 1 1 2.3e-53 6.8e-52 166.5 0.1 26 155 1 133 1 133 0.99 # 24849 # 25253 # -1 # ID=1_30;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.442 1_19 - 124 PaaX PF07848.7 70 3e-06 18.4 0.0 1 1 1.4e-07 4.2e-06 18.0 0.0 34 69 39 75 25 76 0.88 # 15101 # 15472 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.258 1_22 - 143 MaoC_dehydratas PF01575.14 123 1.9e-32 102.5 0.0 1 1 8.1e-34 2.4e-32 102.1 0.0 6 119 8 120 5 125 0.91 # 19381 # 19809 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.289 1_20 - 586 Peptidase_M56 PF05569.6 299 3.6e-103 335.8 14.0 1 1 1.2e-104 3.6e-103 335.8 14.0 2 299 5 301 4 301 0.99 # 15472 # 17229 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_18 - 383 MarR_2 PF12802.2 62 2.5e-07 21.6 0.0 1 1 1.9e-08 5.6e-07 20.5 0.0 6 54 10 56 5 64 0.88 # 13480 # 14628 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_18 - 383 HTH_19 PF12844.2 64 7.7e-05 14.0 0.5 1 1 9e-06 0.00027 12.2 0.5 4 37 15 48 13 56 0.88 # 13480 # 14628 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_17 - 87 SH3_1 PF00018.23 48 0.00013 12.6 0.2 1 2 0.0013 0.038 4.7 0.1 19 38 3 23 1 27 0.83 # 13106 # 13366 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307 1_17 - 87 SH3_1 PF00018.23 48 0.00013 12.6 0.2 2 2 0.00051 0.015 6.0 0.0 12 25 36 49 35 53 0.87 # 13106 # 13366 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307 1_7 - 543 AAA_23 PF13476.1 202 0.097 4.1 22.7 1 1 0.003 0.091 4.2 18.7 90 202 341 472 82 475 0.73 # 5896 # 7524 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 1_22 - 143 MaoC_dehydrat_N PF13452.1 132 8e-09 26.6 0.0 1 1 3.9e-10 1.2e-08 26.1 0.0 3 128 8 129 7 132 0.80 # 19381 # 19809 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.289 1_26 - 225 MULE PF10551.4 93 5.9e-05 14.5 0.1 1 1 4.7e-06 0.00014 13.3 0.0 19 77 92 147 63 161 0.84 # 21911 # 22585 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_26 - 225 HEM4 PF02602.10 231 0.00017 12.1 0.0 1 1 9.5e-06 0.00029 11.3 0.0 127 154 26 53 10 70 0.79 # 21911 # 22585 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_23 - 248 FMN_dh PF01070.13 357 0.00018 11.5 0.1 1 2 0.0011 0.032 4.2 0.0 191 236 69 117 13 126 0.70 # 19906 # 20649 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_23 - 248 FMN_dh PF01070.13 357 0.00018 11.5 0.1 2 2 0.00042 0.013 5.5 0.0 119 153 192 226 179 238 0.87 # 19906 # 20649 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_18 - 383 HTH_36 PF13730.1 55 2.8e-05 15.5 2.5 1 1 1e-06 3e-05 15.4 0.7 2 50 6 48 5 53 0.93 # 13480 # 14628 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_19 - 124 Penicillinase_R PF03965.11 115 6.6e-41 130.3 0.3 1 1 4.9e-42 7.3e-41 130.1 0.3 1 114 8 121 8 122 0.99 # 15101 # 15472 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.258 1_18 - 383 Penicillinase_R PF03965.11 115 0.0001 13.6 0.8 1 1 1.5e-05 0.00022 12.6 0.1 3 57 9 59 7 63 0.89 # 13480 # 14628 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_26 - 225 AAA_17 PF13207.1 121 1.5e-06 20.3 1.1 1 1 7.3e-08 2.2e-06 19.7 1.1 23 113 24 122 20 206 0.85 # 21911 # 22585 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_7 - 543 Zn_ribbon_recom PF13408.1 58 2.8e-18 57.2 0.4 1 1 4.5e-19 6.7e-18 56.0 0.4 1 57 295 360 295 361 0.85 # 5896 # 7524 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 1_6 - 449 Zn_ribbon_recom PF13408.1 58 4.5e-11 34.2 3.8 1 1 1.1e-11 1.6e-10 32.4 3.8 2 57 262 320 262 321 0.83 # 4529 # 5875 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.341 1_14 - 87 HTH_34 PF13601.1 80 4.9e-05 14.6 0.1 1 1 2.2e-06 6.5e-05 14.2 0.1 12 55 26 69 17 74 0.91 # 10539 # 10799 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.249 1_18 - 383 MarR PF01047.17 59 3.9e-09 27.4 0.8 1 1 5.6e-10 8.4e-09 26.3 0.1 1 47 7 53 7 55 0.92 # 13480 # 14628 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_19 - 124 MarR PF01047.17 59 2.1e-08 25.0 0.0 1 1 2.7e-09 4e-08 24.2 0.0 1 53 8 64 8 65 0.93 # 15101 # 15472 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.258 1_18 - 383 HTH_24 PF13412.1 48 1.3e-05 15.8 2.0 1 1 4.2e-07 1.3e-05 15.8 2.0 2 42 8 48 7 52 0.96 # 13480 # 14628 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_7 - 543 Ogr_Delta PF04606.7 47 8.4e-18 55.1 1.7 1 1 5.3e-19 1.6e-17 54.2 1.7 1 47 301 356 301 356 0.95 # 5896 # 7524 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 1_26 - 225 DDE_Tnp_IS240 PF13610.1 140 2.4e-44 141.9 2.7 1 1 1.1e-45 3.4e-44 141.4 2.7 3 139 72 203 70 204 0.95 # 21911 # 22585 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_30 - 135 Methyltrn_RNA_4 PF09936.4 185 9.8e-05 13.1 0.1 1 1 4.4e-06 0.00013 12.7 0.1 116 158 59 101 15 115 0.70 # 24849 # 25253 # -1 # ID=1_30;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.442 1_7 - 543 DEAD PF00270.24 169 0.072 3.8 10.7 1 2 0.00062 0.018 5.7 2.7 45 117 276 427 96 436 0.69 # 5896 # 7524 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 1_7 - 543 DEAD PF00270.24 169 0.072 3.8 10.7 2 2 0.0077 0.23 2.1 2.0 78 138 437 500 419 532 0.65 # 5896 # 7524 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 1_26 - 225 HTH_23 PF13384.1 50 7.2e-06 16.9 1.4 1 1 2.1e-06 6.2e-05 13.9 0.1 28 41 41 54 40 57 0.92 # 21911 # 22585 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_19 - 124 TFIIE_alpha PF02002.12 105 7.9e-06 16.6 0.8 1 2 5.3e-07 7.9e-06 16.6 0.8 16 74 13 71 4 92 0.77 # 15101 # 15472 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.258 1_19 - 124 TFIIE_alpha PF02002.12 105 7.9e-06 16.6 0.8 2 2 0.077 1.2 0.0 0.1 30 49 105 121 84 122 0.57 # 15101 # 15472 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.258 1_18 - 383 TFIIE_alpha PF02002.12 105 1.1e-05 16.2 0.7 1 1 2.1e-06 3.2e-05 14.7 0.1 13 58 9 54 2 66 0.89 # 13480 # 14628 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_22 - 143 FabA PF07977.8 138 1.1e-05 16.2 0.0 1 1 5.9e-07 1.8e-05 15.5 0.0 58 134 55 129 50 134 0.68 # 19381 # 19809 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.289 1_30 - 135 TIGR00246 TIGR00246 155 6.6e-47 150.3 0.0 1 1 2.4e-48 7.2e-47 150.1 0.0 26 154 1 134 1 134 0.97 # 24849 # 25253 # -1 # ID=1_30;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.442 1_26 - 225 Arg_repressor PF01316.16 70 9.5e-05 13.2 0.0 1 1 9.7e-06 0.00029 11.6 0.0 24 48 30 54 26 74 0.81 # 21911 # 22585 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_18 - 383 ROK PF00480.15 179 1.5e-44 143.1 1.4 1 2 2.2e-45 6.6e-44 141.0 0.3 1 179 83 262 83 262 0.91 # 13480 # 14628 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_18 - 383 ROK PF00480.15 179 1.5e-44 143.1 1.4 2 2 0.023 0.7 0.9 0.0 22 58 283 320 273 357 0.78 # 13480 # 14628 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_26 - 225 HTH_28 PF13518.1 52 2.8e-05 15.4 0.4 1 1 4.3e-06 0.00013 13.2 0.4 15 36 31 54 17 55 0.80 # 21911 # 22585 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_22 - 143 4HBT PF03061.17 79 1.3e-05 16.6 0.0 1 1 8.8e-07 2.6e-05 15.5 0.0 28 58 75 105 52 110 0.84 # 19381 # 19809 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.289 1_26 - 225 HTH_Tnp_4 PF13613.1 53 5.4e-05 14.0 0.3 1 1 6.5e-06 0.00019 12.2 0.3 30 49 41 60 18 63 0.83 # 21911 # 22585 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_4 - 596 DUF927 PF06048.6 286 8.8e-84 272.3 0.0 1 1 4.9e-85 1.5e-83 271.5 0.0 1 285 11 299 11 300 0.97 # 2184 # 3971 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.361 1_19 - 124 LexA_DNA_bind PF01726.11 65 0.00027 11.7 0.0 1 1 1.4e-05 0.00042 11.1 0.0 39 60 41 62 17 65 0.82 # 15101 # 15472 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.258 1_18 - 383 FeoC PF09012.5 69 0.00032 11.7 0.3 1 1 3.5e-05 0.001 10.0 0.0 9 49 18 58 12 68 0.81 # 13480 # 14628 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_18 - 383 Fe_dep_repress PF01325.14 60 7.7e-07 20.3 0.0 1 1 6e-08 1.8e-06 19.1 0.0 8 53 13 54 7 59 0.86 # 13480 # 14628 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_18 - 383 TIGR00744 TIGR00744 318 5.8e-24 75.7 1.7 1 1 2.2e-23 6.5e-22 69.0 1.7 24 282 107 344 84 371 0.81 # 13480 # 14628 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_26 - 225 rve PF00665.21 120 2.6e-18 57.5 0.6 1 2 0.04 1.2 0.5 0.0 83 102 30 49 9 52 0.89 # 21911 # 22585 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_26 - 225 rve PF00665.21 120 2.6e-18 57.5 0.6 2 2 5.4e-19 1.6e-17 55.0 0.3 2 117 66 174 65 176 0.93 # 21911 # 22585 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_18 - 383 HTH_27 PF13463.1 68 4.1e-07 21.5 0.0 1 2 4.4e-06 6.6e-05 14.5 0.0 6 51 12 56 7 65 0.81 # 13480 # 14628 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_18 - 383 HTH_27 PF13463.1 68 4.1e-07 21.5 0.0 2 2 0.0056 0.084 4.5 0.0 5 39 259 294 257 300 0.85 # 13480 # 14628 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_19 - 124 HTH_27 PF13463.1 68 6.2e-05 14.6 0.0 1 2 0.00011 0.0016 10.0 0.0 2 54 9 64 8 69 0.83 # 15101 # 15472 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.258 1_19 - 124 HTH_27 PF13463.1 68 6.2e-05 14.6 0.0 2 2 0.027 0.4 2.4 0.0 7 29 98 121 96 122 0.88 # 15101 # 15472 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.258 1_18 - 383 HTH_3 PF01381.17 55 0.00012 13.2 0.2 1 1 1.2e-05 0.00037 11.6 0.2 1 32 15 46 15 52 0.92 # 13480 # 14628 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_26 - 225 DDE_3 PF13358.1 146 3.1e-06 18.2 0.3 1 1 1.8e-07 5.4e-06 17.4 0.2 26 95 74 143 57 198 0.76 # 21911 # 22585 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_7 - 543 HTH_21 PF13276.1 60 7.1e-05 14.1 0.2 1 1 4.8e-05 0.00072 10.8 0.2 4 36 179 211 176 215 0.84 # 5896 # 7524 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 1_6 - 449 HTH_21 PF13276.1 60 0.00013 13.2 0.0 1 1 2.8e-05 0.00042 11.6 0.0 6 38 170 201 166 226 0.75 # 4529 # 5875 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.341 1_16 - 313 Lactamase_B PF00753.22 194 3.1e-14 44.2 0.0 1 1 2.2e-15 6.5e-14 43.2 0.0 7 194 14 195 10 195 0.89 # 12032 # 12970 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_26 - 225 DDE_Tnp_IS66 PF03050.9 271 2.2e-07 21.5 4.0 1 2 1.6e-08 4.7e-07 20.4 1.2 16 97 21 96 7 134 0.76 # 21911 # 22585 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_26 - 225 DDE_Tnp_IS66 PF03050.9 271 2.2e-07 21.5 4.0 2 2 0.008 0.24 1.7 0.1 243 264 163 184 156 190 0.81 # 21911 # 22585 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_18 - 383 TrmB PF01978.14 68 7.3e-08 23.3 0.1 1 1 1.2e-08 1.9e-07 22.0 0.1 3 55 4 56 1 71 0.93 # 13480 # 14628 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_19 - 124 TrmB PF01978.14 68 2.6e-06 18.4 0.2 1 2 1e-06 1.5e-05 15.9 0.0 4 62 6 70 4 76 0.74 # 15101 # 15472 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.258 1_19 - 124 TrmB PF01978.14 68 2.6e-06 18.4 0.2 2 2 0.086 1.3 0.1 0.0 26 51 70 95 64 95 0.78 # 15101 # 15472 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.258 1_18 - 383 HTH_26 PF13443.1 63 0.00012 13.5 1.2 1 1 8.9e-06 0.00027 12.4 0.2 2 33 15 46 14 53 0.91 # 13480 # 14628 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_18 - 383 z-alpha PF02295.12 66 0.00017 12.6 2.2 1 1 1.6e-05 0.00047 11.2 0.8 4 50 9 53 7 57 0.92 # 13480 # 14628 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_20 - 586 Peptidase_M48 PF01435.13 226 3.9e-09 27.6 0.0 1 1 2.6e-10 7.8e-09 26.6 0.0 22 121 128 230 114 265 0.81 # 15472 # 17229 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_18 - 383 Rrf2 PF02082.15 83 0.00023 12.5 0.3 1 1 2.9e-05 0.00087 10.7 0.1 23 56 21 54 13 59 0.85 # 13480 # 14628 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_4 - 596 AAA_29 PF13555.1 62 0.00021 12.1 0.5 1 1 2.3e-05 0.00069 10.4 0.5 14 39 196 219 191 232 0.83 # 2184 # 3971 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.361 1_7 - 543 DUF948 PF06103.6 90 0.0014 9.7 9.3 1 2 0.07 2.1 -0.4 0.1 37 62 387 412 358 422 0.54 # 5896 # 7524 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 1_7 - 543 DUF948 PF06103.6 90 0.0014 9.7 9.3 2 2 1.2e-05 0.00036 11.7 4.6 19 79 411 473 404 478 0.82 # 5896 # 7524 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 1_7 - 543 zf-C4_Topoisom PF01396.14 39 2.1e-05 15.2 1.9 1 1 3.7e-06 0.00011 12.9 1.9 2 27 300 334 299 336 0.72 # 5896 # 7524 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 1_26 - 225 HTH_32 PF13565.1 77 1.9e-08 26.3 0.5 1 2 2.2e-07 6.5e-06 18.2 0.1 48 76 25 50 10 51 0.86 # 21911 # 22585 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_26 - 225 HTH_32 PF13565.1 77 1.9e-08 26.3 0.5 2 2 0.0012 0.035 6.2 0.0 29 63 136 171 100 183 0.74 # 21911 # 22585 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/93c66327-6ed0-43fc-a4b5-56daddef4287 # Target file: checkm_output/bins/cSCCmec_AM904732/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/cSCCmec_AM904732/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/93c66327-6ed0-43fc-a4b5-56daddef4287 checkm_output/bins/cSCCmec_AM904732/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:51:04 2021 # [ok]