# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_34 - 135 SPOUT_MTase PF02590.12 155 2.2e-51 165.0 0.1 1 1 7.1e-53 2.4e-51 164.9 0.1 26 155 1 133 1 133 0.99 # 30085 # 30489 # -1 # ID=1_34;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.452 1_24 - 124 PaaX PF07848.7 70 3.4e-06 18.4 0.0 1 1 1.4e-07 4.7e-06 18.0 0.0 34 69 39 75 25 76 0.88 # 21559 # 21930 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.258 1_27 - 143 MaoC_dehydratas PF01575.14 123 2.1e-32 102.5 0.0 1 1 8.1e-34 2.8e-32 102.1 0.0 6 119 8 120 5 125 0.91 # 25839 # 26267 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.289 1_25 - 586 Peptidase_M56 PF05569.6 299 4e-103 335.8 14.0 1 1 1.2e-104 4e-103 335.8 14.0 2 299 5 301 4 301 0.99 # 21930 # 23687 # -1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_23 - 383 MarR_2 PF12802.2 62 2.8e-07 21.6 0.0 1 1 1.9e-08 6.3e-07 20.5 0.0 6 54 10 56 5 64 0.88 # 19938 # 21086 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_15 - 122 HTH_Crp_2 PF13545.1 76 0.00025 12.3 0.0 1 2 0.019 0.64 1.3 0.0 33 56 4 27 2 47 0.81 # 12615 # 12980 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_15 - 122 HTH_Crp_2 PF13545.1 76 0.00025 12.3 0.0 2 2 7.1e-05 0.0024 9.1 0.0 31 62 58 89 30 94 0.84 # 12615 # 12980 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_23 - 383 HTH_19 PF12844.2 64 8.4e-05 14.0 0.5 1 1 9e-06 0.00031 12.2 0.5 4 37 15 48 13 56 0.88 # 19938 # 21086 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_22 - 87 SH3_1 PF00018.23 48 0.00015 12.6 0.2 1 2 0.0013 0.043 4.7 0.1 19 38 3 23 1 27 0.83 # 19564 # 19824 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307 1_22 - 87 SH3_1 PF00018.23 48 0.00015 12.6 0.2 2 2 0.00051 0.017 6.0 0.0 12 25 36 49 35 53 0.87 # 19564 # 19824 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307 1_14 - 126 DUF972 PF06156.8 107 0.033 6.0 10.3 1 3 0.048 1.6 0.5 0.4 29 64 17 23 1 59 0.52 # 12000 # 12377 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.302 1_14 - 126 DUF972 PF06156.8 107 0.033 6.0 10.3 2 3 0.019 0.66 1.8 0.5 36 73 57 87 23 94 0.54 # 12000 # 12377 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.302 1_14 - 126 DUF972 PF06156.8 107 0.033 6.0 10.3 3 3 0.0001 0.0034 9.2 1.6 24 52 93 121 86 125 0.87 # 12000 # 12377 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.302 1_6 - 543 AAA_23 PF13476.1 202 0.079 4.6 22.2 1 1 0.0029 0.1 4.3 18.7 94 202 330 472 108 475 0.69 # 5997 # 7625 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.351 1_17 - 229 UPF0016 PF01169.14 78 0.0049 8.5 12.5 1 1 4.4e-06 0.00015 13.3 4.1 19 78 45 104 28 104 0.89 # 15399 # 16085 # 1 # ID=1_17;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.348 1_27 - 143 MaoC_dehydrat_N PF13452.1 132 9e-09 26.6 0.0 1 1 3.9e-10 1.3e-08 26.1 0.0 3 128 8 129 7 132 0.80 # 25839 # 26267 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.289 1_31 - 225 MULE PF10551.4 93 6.7e-05 14.5 0.1 1 1 4.7e-06 0.00016 13.3 0.0 19 77 92 147 63 161 0.84 # 28449 # 29123 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_31 - 225 HEM4 PF02602.10 231 0.00019 12.1 0.0 1 1 9.5e-06 0.00032 11.3 0.0 127 154 26 53 10 70 0.79 # 28449 # 29123 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_28 - 248 FMN_dh PF01070.13 357 0.00021 11.5 0.1 1 2 0.0011 0.036 4.2 0.0 191 236 69 117 13 126 0.70 # 26364 # 27107 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_28 - 248 FMN_dh PF01070.13 357 0.00021 11.5 0.1 2 2 0.00042 0.014 5.5 0.0 119 153 192 226 179 238 0.87 # 26364 # 27107 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_23 - 383 HTH_36 PF13730.1 55 3.2e-05 15.4 2.5 1 1 1e-06 3.4e-05 15.4 0.7 2 50 6 48 5 53 0.93 # 19938 # 21086 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_16 - 805 Hydrolase PF00702.21 215 1.5e-46 150.9 1.3 1 1 9.5e-48 3.2e-46 149.8 1.3 1 213 486 707 486 709 0.91 # 12973 # 15387 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.406 1_24 - 124 Penicillinase_R PF03965.11 115 7.5e-41 130.3 0.3 1 1 4.9e-42 8.3e-41 130.1 0.3 1 114 8 121 8 122 0.99 # 21559 # 21930 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.258 1_23 - 383 Penicillinase_R PF03965.11 115 0.00012 13.6 0.8 1 1 1.5e-05 0.00025 12.6 0.1 3 57 9 59 7 63 0.89 # 19938 # 21086 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_31 - 225 AAA_17 PF13207.1 121 1.7e-06 20.3 1.1 1 1 7.3e-08 2.5e-06 19.7 1.1 23 113 24 122 20 206 0.85 # 28449 # 29123 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_6 - 543 Zn_ribbon_recom PF13408.1 58 4.1e-18 56.9 1.6 1 1 3.5e-19 6e-18 56.4 0.5 1 57 295 360 295 361 0.85 # 5997 # 7625 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.351 1_5 - 450 Zn_ribbon_recom PF13408.1 58 1.4e-13 42.4 4.4 1 1 3.2e-14 5.4e-13 40.5 4.4 2 58 262 322 262 322 0.83 # 4627 # 5976 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_19 - 87 HTH_34 PF13601.1 80 5.6e-05 14.6 0.1 1 1 2.2e-06 7.4e-05 14.2 0.1 12 55 26 69 17 74 0.91 # 16997 # 17257 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.249 1_23 - 383 MarR PF01047.17 59 4.4e-09 27.4 0.8 1 1 5.6e-10 9.5e-09 26.3 0.1 1 47 7 53 7 55 0.92 # 19938 # 21086 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_24 - 124 MarR PF01047.17 59 2.4e-08 25.0 0.0 1 1 2.7e-09 4.6e-08 24.2 0.0 1 53 8 64 8 65 0.93 # 21559 # 21930 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.258 1_15 - 122 HTH_20 PF12840.2 61 9e-11 32.9 0.4 1 1 5.9e-12 2e-10 31.8 0.0 2 61 33 92 32 92 0.97 # 12615 # 12980 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_15 - 122 HTH_5 PF01022.15 47 2e-19 60.5 0.1 1 1 1.3e-20 4.4e-19 59.4 0.1 1 47 40 87 40 87 0.97 # 12615 # 12980 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_23 - 383 HTH_24 PF13412.1 48 1.4e-05 15.8 2.0 1 1 4.2e-07 1.4e-05 15.8 2.0 2 42 8 48 7 52 0.96 # 19938 # 21086 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_6 - 543 Ogr_Delta PF04606.7 47 9.5e-18 55.1 1.7 1 1 5.3e-19 1.8e-17 54.2 1.7 1 47 301 356 301 356 0.95 # 5997 # 7625 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.351 1_31 - 225 DDE_Tnp_IS240 PF13610.1 140 2.7e-44 141.9 2.7 1 1 1.1e-45 3.8e-44 141.4 2.7 3 139 72 203 70 204 0.95 # 28449 # 29123 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_34 - 135 Methyltrn_RNA_4 PF09936.4 185 8.6e-05 13.5 0.0 1 1 3.4e-06 0.00011 13.1 0.0 111 158 53 101 13 115 0.67 # 30085 # 30489 # -1 # ID=1_34;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.452 1_14 - 126 LacI PF00356.16 46 1.6e-05 15.9 0.4 1 2 0.00013 0.0044 8.1 0.1 27 40 19 32 10 34 0.87 # 12000 # 12377 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.302 1_14 - 126 LacI PF00356.16 46 1.6e-05 15.9 0.4 2 2 0.0011 0.037 5.1 0.0 5 14 45 54 42 54 0.90 # 12000 # 12377 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.302 1_31 - 225 HTH_23 PF13384.1 50 8.1e-06 16.9 1.4 1 1 2.1e-06 7e-05 13.9 0.1 28 41 41 54 40 57 0.92 # 28449 # 29123 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_5 - 450 Adenine_glyco PF03352.8 179 3.6e-05 14.7 0.2 1 2 5.3e-06 0.00018 12.4 0.0 56 145 183 267 174 277 0.75 # 4627 # 5976 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_5 - 450 Adenine_glyco PF03352.8 179 3.6e-05 14.7 0.2 2 2 0.077 2.6 -1.1 0.1 130 157 328 355 303 373 0.70 # 4627 # 5976 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_24 - 124 TFIIE_alpha PF02002.12 105 6.6e-06 17.0 0.8 1 2 3.9e-07 6.6e-06 17.0 0.8 15 74 12 71 3 92 0.76 # 21559 # 21930 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.258 1_24 - 124 TFIIE_alpha PF02002.12 105 6.6e-06 17.0 0.8 2 2 0.077 1.3 0.0 0.1 30 49 105 121 84 122 0.57 # 21559 # 21930 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.258 1_23 - 383 TFIIE_alpha PF02002.12 105 1.2e-05 16.2 0.7 1 1 2.1e-06 3.6e-05 14.7 0.1 13 58 9 54 2 66 0.89 # 19938 # 21086 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_16 - 805 Hydrolase_3 PF08282.7 254 4.7e-06 17.7 1.1 1 1 1.4e-07 4.7e-06 17.7 1.1 194 239 681 727 679 731 0.85 # 12973 # 15387 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.406 1_27 - 143 FabA PF07977.8 138 1.2e-05 16.2 0.0 1 1 5.9e-07 2e-05 15.5 0.0 58 134 55 129 50 134 0.68 # 25839 # 26267 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.289 1_14 - 126 HTH_6 PF01418.12 77 0.00078 10.6 4.9 1 2 1.4e-05 0.00047 11.3 0.5 2 51 7 56 6 58 0.91 # 12000 # 12377 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.302 1_14 - 126 HTH_6 PF01418.12 77 0.00078 10.6 4.9 2 2 0.025 0.85 0.9 0.4 5 29 76 100 72 117 0.68 # 12000 # 12377 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.302 1_34 - 135 TIGR00246 TIGR00246 155 5.8e-47 150.6 0.0 1 1 1.9e-48 6.5e-47 150.5 0.0 26 154 1 134 1 134 0.96 # 30085 # 30489 # -1 # ID=1_34;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.452 1_31 - 225 Arg_repressor PF01316.16 70 0.00011 13.2 0.0 1 1 9.7e-06 0.00033 11.6 0.0 24 48 30 54 26 74 0.81 # 28449 # 29123 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_23 - 383 ROK PF00480.15 179 1.4e-44 143.4 1.4 1 2 1.8e-45 6.2e-44 141.3 0.3 1 179 83 262 83 262 0.91 # 19938 # 21086 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_23 - 383 ROK PF00480.15 179 1.4e-44 143.4 1.4 2 2 0.023 0.79 0.9 0.0 22 58 283 320 273 357 0.78 # 19938 # 21086 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_31 - 225 HTH_28 PF13518.1 52 3.2e-05 15.4 0.4 1 1 4.3e-06 0.00015 13.2 0.4 15 36 31 54 17 55 0.80 # 28449 # 29123 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_16 - 805 HAD PF12710.2 192 4e-16 51.1 0.0 1 1 3.1e-17 1.1e-15 49.7 0.0 1 191 489 705 489 706 0.61 # 12973 # 15387 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.406 1_27 - 143 4HBT PF03061.17 79 1.4e-05 16.6 0.0 1 1 8.8e-07 3e-05 15.5 0.0 28 58 75 105 52 110 0.84 # 25839 # 26267 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.289 1_31 - 225 HTH_Tnp_4 PF13613.1 53 6.2e-05 14.0 0.3 1 1 6.5e-06 0.00022 12.2 0.3 30 49 41 60 18 63 0.83 # 28449 # 29123 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_3 - 598 DUF927 PF06048.6 286 4.5e-73 237.3 0.0 1 1 2e-74 6.8e-73 236.7 0.0 4 285 16 301 14 302 0.93 # 2274 # 4067 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_24 - 124 LexA_DNA_bind PF01726.11 65 0.00031 11.7 0.0 1 1 1.4e-05 0.00049 11.1 0.0 39 60 41 62 18 65 0.82 # 21559 # 21930 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.258 1_23 - 383 FeoC PF09012.5 69 0.00036 11.7 0.3 1 1 3.5e-05 0.0012 10.0 0.0 9 49 18 58 12 68 0.81 # 19938 # 21086 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_18 - 210 TauE PF01925.14 240 5.7e-32 102.4 37.7 1 1 2e-33 6.7e-32 102.2 37.7 2 198 5 205 3 208 0.87 # 16353 # 16982 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.330 1_23 - 383 Fe_dep_repress PF01325.14 60 8.7e-07 20.3 0.0 1 1 6e-08 2e-06 19.1 0.0 8 53 13 54 7 59 0.86 # 19938 # 21086 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_23 - 383 TIGR00744 TIGR00744 318 5.2e-24 76.1 1.5 1 1 1.7e-23 5.8e-22 69.3 1.5 24 282 107 344 84 371 0.81 # 19938 # 21086 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_31 - 225 rve PF00665.21 120 2.9e-18 57.5 0.6 1 2 0.04 1.4 0.5 0.0 83 102 30 49 9 52 0.89 # 28449 # 29123 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_31 - 225 rve PF00665.21 120 2.9e-18 57.5 0.6 2 2 5.4e-19 1.8e-17 55.0 0.3 2 117 66 174 65 176 0.93 # 28449 # 29123 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_13 - 631 TIGR02225 TIGR02225 290 1.7e-25 80.9 0.0 1 1 1e-26 3.5e-25 79.9 0.0 23 286 243 515 227 518 0.80 # 10101 # 11993 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 1_23 - 383 HTH_27 PF13463.1 68 4.7e-07 21.5 0.0 1 2 4.4e-06 7.5e-05 14.5 0.0 6 51 12 56 7 65 0.81 # 19938 # 21086 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_23 - 383 HTH_27 PF13463.1 68 4.7e-07 21.5 0.0 2 2 0.0056 0.095 4.5 0.0 5 39 259 294 257 300 0.85 # 19938 # 21086 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_24 - 124 HTH_27 PF13463.1 68 7e-05 14.6 0.0 1 2 0.00011 0.0019 10.0 0.0 2 54 9 64 8 69 0.83 # 21559 # 21930 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.258 1_24 - 124 HTH_27 PF13463.1 68 7e-05 14.6 0.0 2 2 0.027 0.45 2.4 0.0 7 29 98 121 96 122 0.88 # 21559 # 21930 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.258 1_17 - 229 Cad PF03596.8 191 6.4e-86 278.3 16.8 1 1 2.2e-87 7.6e-86 278.0 16.8 1 191 35 226 35 226 0.97 # 15399 # 16085 # 1 # ID=1_17;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.348 1_23 - 383 HTH_3 PF01381.17 55 0.00012 13.3 0.2 1 1 1.2e-05 0.00042 11.6 0.2 1 32 15 46 15 52 0.92 # 19938 # 21086 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_31 - 225 DDE_3 PF13358.1 146 3.5e-06 18.2 0.3 1 1 1.8e-07 6.1e-06 17.4 0.2 26 95 74 143 57 198 0.76 # 28449 # 29123 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_5 - 450 HTH_21 PF13276.1 60 1.6e-05 16.3 1.1 1 1 1.6e-06 2.8e-05 15.5 0.1 6 41 170 204 165 225 0.85 # 4627 # 5976 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_6 - 543 HTH_21 PF13276.1 60 7.5e-05 14.1 0.2 1 1 4.8e-05 0.00082 10.8 0.2 4 36 179 211 176 215 0.84 # 5997 # 7625 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.351 1_21 - 313 Lactamase_B PF00753.22 194 3.5e-14 44.2 0.0 1 1 2.2e-15 7.4e-14 43.2 0.0 7 194 14 195 10 195 0.89 # 18490 # 19428 # 1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_31 - 225 DDE_Tnp_IS66 PF03050.9 271 2.5e-07 21.5 4.0 1 2 1.6e-08 5.3e-07 20.4 1.2 16 97 21 96 7 134 0.76 # 28449 # 29123 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_31 - 225 DDE_Tnp_IS66 PF03050.9 271 2.5e-07 21.5 4.0 2 2 0.008 0.27 1.7 0.1 243 264 163 184 156 190 0.81 # 28449 # 29123 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_23 - 383 TrmB PF01978.14 68 8.2e-08 23.3 0.1 1 1 1.9e-08 2.1e-07 22.0 0.1 3 55 4 56 1 71 0.93 # 19938 # 21086 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_24 - 124 TrmB PF01978.14 68 4.7e-06 17.7 0.3 1 1 2.3e-06 2.6e-05 15.3 0.0 4 62 6 70 4 76 0.70 # 21559 # 21930 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.258 1_15 - 122 TrmB PF01978.14 68 0.00016 12.8 0.1 1 1 8.2e-05 0.00093 10.4 0.0 19 65 52 98 44 101 0.89 # 12615 # 12980 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_23 - 383 HTH_26 PF13443.1 63 0.00027 12.6 2.3 1 1 8.9e-06 0.0003 12.4 0.2 2 33 15 46 14 53 0.91 # 19938 # 21086 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_23 - 383 z-alpha PF02295.12 66 0.00019 12.6 2.2 1 1 1.6e-05 0.00053 11.2 0.8 4 50 9 53 7 57 0.92 # 19938 # 21086 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_25 - 586 Peptidase_M48 PF01435.13 226 4.4e-09 27.6 0.0 1 1 2.6e-10 8.9e-09 26.6 0.0 22 121 128 230 114 265 0.81 # 21930 # 23687 # -1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_23 - 383 Rrf2 PF02082.15 83 0.00026 12.6 0.3 1 1 2.9e-05 0.00098 10.7 0.1 23 56 21 54 13 59 0.85 # 19938 # 21086 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.286 1_6 - 543 DUF948 PF06103.6 90 0.00027 12.2 6.8 1 2 0.07 2.4 -0.4 0.1 37 62 387 412 358 422 0.54 # 5997 # 7625 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.351 1_6 - 543 DUF948 PF06103.6 90 0.00027 12.2 6.8 2 2 1.2e-05 0.0004 11.7 4.6 19 79 411 473 404 478 0.82 # 5997 # 7625 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.351 1_6 - 543 zf-C4_Topoisom PF01396.14 39 2.3e-05 15.3 1.6 1 1 3.5e-06 0.00012 13.0 1.6 3 27 301 334 299 336 0.72 # 5997 # 7625 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.351 1_31 - 225 HTH_32 PF13565.1 77 2.1e-08 26.3 0.5 1 2 2.2e-07 7.3e-06 18.2 0.1 48 76 25 50 10 51 0.86 # 28449 # 29123 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_31 - 225 HTH_32 PF13565.1 77 2.1e-08 26.3 0.5 2 2 0.0012 0.039 6.2 0.0 29 63 136 171 100 183 0.74 # 28449 # 29123 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/2b1a3be5-cb5e-43a8-97ae-bfc7966a7154 # Target file: checkm_output/bins/cSCCmec_AM904731/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/cSCCmec_AM904731/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2b1a3be5-cb5e-43a8-97ae-bfc7966a7154 checkm_output/bins/cSCCmec_AM904731/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:50:59 2021 # [ok]