# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 118 SPOUT_MTase PF02590.12 155 3e-48 154.8 0.3 1 1 9.8e-50 3.2e-48 154.7 0.3 43 155 4 116 1 116 0.98 # 3 # 356 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 1_17 - 143 MaoC_dehydratas PF01575.14 123 2.1e-32 102.5 0.0 1 1 8.1e-34 2.7e-32 102.1 0.0 6 119 8 120 5 125 0.91 # 13162 # 13590 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=15bp;gc_cont=0.291 1_21 - 310 Mga PF05043.8 87 5.6e-07 21.2 0.2 1 1 1.7e-08 5.6e-07 21.2 0.2 18 56 7 45 1 46 0.91 # 17133 # 18062 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.260 1_17 - 143 MaoC_dehydrat_N PF13452.1 132 8.8e-09 26.6 0.0 1 1 3.9e-10 1.3e-08 26.1 0.0 3 128 8 129 7 132 0.80 # 13162 # 13590 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=15bp;gc_cont=0.291 1_13 - 225 MULE PF10551.4 93 6.3e-05 14.5 0.1 1 1 4.7e-06 0.00016 13.3 0.0 19 77 92 147 63 161 0.84 # 10306 # 10980 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.344 1_13 - 225 HEM4 PF02602.10 231 0.00019 12.0 0.0 1 1 9.5e-06 0.00031 11.3 0.0 127 154 26 53 10 70 0.79 # 10306 # 10980 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.344 1_16 - 248 FMN_dh PF01070.13 357 0.0002 11.5 0.1 1 2 0.0011 0.035 4.2 0.0 191 236 69 117 13 126 0.70 # 12322 # 13065 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.335 1_16 - 248 FMN_dh PF01070.13 357 0.0002 11.5 0.1 2 2 0.00042 0.014 5.5 0.0 119 153 192 226 179 238 0.87 # 12322 # 13065 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.335 1_13 - 225 AAA_17 PF13207.1 121 1.8e-06 20.1 1.2 1 1 7.9e-08 2.6e-06 19.6 1.2 23 113 24 122 19 205 0.85 # 10306 # 10980 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.344 1_9 - 559 Zn_ribbon_recom PF13408.1 58 2.2e-14 44.9 5.8 1 1 3e-15 5e-14 43.8 5.8 2 53 300 361 299 366 0.81 # 7108 # 8784 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=15bp;gc_cont=0.340 1_27 - 560 Zn_ribbon_recom PF13408.1 58 6.3e-14 43.4 5.5 1 1 8.6e-15 1.4e-13 42.3 5.5 2 53 300 361 299 366 0.81 # 23718 # 25397 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=15bp;gc_cont=0.329 1_9 - 559 Ogr_Delta PF04606.7 47 4.5e-17 52.9 6.2 1 1 5e-18 8.3e-17 52.0 6.2 1 47 305 361 305 361 0.97 # 7108 # 8784 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=15bp;gc_cont=0.340 1_27 - 560 Ogr_Delta PF04606.7 47 4.8e-17 52.8 5.9 1 1 5.4e-18 9e-17 51.9 5.9 1 47 305 361 305 361 0.97 # 23718 # 25397 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=15bp;gc_cont=0.329 1_13 - 225 DDE_Tnp_IS240 PF13610.1 140 2.6e-44 141.9 2.7 1 1 1.1e-45 3.7e-44 141.4 2.7 3 139 72 203 70 204 0.95 # 10306 # 10980 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.344 1_1 - 118 Methyltrn_RNA_4 PF09936.4 185 0.0001 13.2 0.0 1 1 4e-06 0.00013 12.8 0.0 116 158 42 84 4 98 0.71 # 3 # 356 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 1_21 - 310 HTH_DeoR PF08220.7 57 1.1e-08 26.0 0.0 1 1 1.2e-09 4e-08 24.1 0.0 1 43 6 48 6 52 0.95 # 17133 # 18062 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.260 1_13 - 225 HTH_23 PF13384.1 50 8e-06 16.9 1.4 1 1 2.1e-06 6.8e-05 13.9 0.1 28 41 41 54 40 57 0.92 # 10306 # 10980 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.344 1_17 - 143 FabA PF07977.8 138 1.2e-05 16.2 0.0 1 1 5.9e-07 2e-05 15.5 0.0 58 134 55 129 50 134 0.68 # 13162 # 13590 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=15bp;gc_cont=0.291 1_21 - 310 HTH_11 PF08279.7 55 2.8e-14 43.9 0.0 1 1 2.8e-15 9.4e-14 42.3 0.0 1 54 6 60 6 61 0.90 # 17133 # 18062 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.260 1_1 - 118 TIGR00246 TIGR00246 155 1.6e-40 129.7 0.0 1 1 5.1e-42 1.7e-40 129.6 0.0 47 154 8 117 1 117 0.96 # 3 # 356 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 1_13 - 225 Arg_repressor PF01316.16 70 0.0001 13.2 0.0 1 1 9.7e-06 0.00032 11.6 0.0 24 48 30 54 26 74 0.81 # 10306 # 10980 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.344 1_13 - 225 HTH_28 PF13518.1 52 3e-05 15.4 0.4 1 1 4.3e-06 0.00014 13.2 0.4 15 36 31 54 17 55 0.80 # 10306 # 10980 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.344 1_17 - 143 4HBT PF03061.17 79 1.4e-05 16.6 0.0 1 1 8.8e-07 2.9e-05 15.5 0.0 28 58 75 105 52 110 0.84 # 13162 # 13590 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=15bp;gc_cont=0.291 1_13 - 225 HTH_Tnp_4 PF13613.1 53 6e-05 14.0 0.3 1 1 6.5e-06 0.00021 12.2 0.3 30 49 41 60 18 63 0.83 # 10306 # 10980 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.344 1_23 - 663 Seryl_tRNA_N PF02403.17 108 0.00058 11.3 5.3 1 2 0.00018 0.006 8.0 0.6 34 99 116 181 111 188 0.90 # 18224 # 20212 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_23 - 663 Seryl_tRNA_N PF02403.17 108 0.00058 11.3 5.3 2 2 0.0033 0.11 3.9 0.4 38 101 569 636 532 644 0.86 # 18224 # 20212 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_13 - 225 rve PF00665.21 120 2.8e-18 57.5 0.6 1 2 0.04 1.3 0.5 0.0 83 102 30 49 9 52 0.89 # 10306 # 10980 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.344 1_13 - 225 rve PF00665.21 120 2.8e-18 57.5 0.6 2 2 5.4e-19 1.8e-17 55.0 0.3 2 117 66 174 65 176 0.93 # 10306 # 10980 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.344 1_13 - 225 DDE_3 PF13358.1 146 3.5e-06 18.2 0.3 1 1 1.8e-07 5.9e-06 17.4 0.3 26 95 74 143 59 203 0.76 # 10306 # 10980 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.344 1_13 - 225 DDE_Tnp_IS66 PF03050.9 271 2.4e-07 21.5 4.0 1 2 1.6e-08 5.1e-07 20.4 1.2 16 97 21 96 7 134 0.76 # 10306 # 10980 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.344 1_13 - 225 DDE_Tnp_IS66 PF03050.9 271 2.4e-07 21.5 4.0 2 2 0.008 0.26 1.7 0.1 243 264 163 184 156 190 0.81 # 10306 # 10980 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.344 1_6 - 367 TIGR00593 TIGR00593 890 3.5e-06 16.6 11.5 1 3 0.017 0.57 -0.7 1.4 456 511 18 82 2 105 0.46 # 3778 # 4878 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=13bp;gc_cont=0.358 1_6 - 367 TIGR00593 TIGR00593 890 3.5e-06 16.6 11.5 2 3 1.4e-06 4.7e-05 12.8 0.2 605 692 111 191 101 198 0.87 # 3778 # 4878 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=13bp;gc_cont=0.358 1_6 - 367 TIGR00593 TIGR00593 890 3.5e-06 16.6 11.5 3 3 9.5e-06 0.00031 10.1 0.3 809 867 287 345 272 351 0.85 # 3778 # 4878 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=13bp;gc_cont=0.358 1_21 - 310 Rrf2 PF02082.15 83 0.00011 13.6 0.0 1 1 6.9e-06 0.00023 12.7 0.0 19 75 13 70 2 75 0.83 # 17133 # 18062 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.260 1_27 - 560 zf-C4_Topoisom PF01396.14 39 4.2e-06 17.6 1.5 1 1 5.4e-07 8.9e-06 16.6 1.5 3 19 305 321 303 327 0.90 # 23718 # 25397 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=15bp;gc_cont=0.329 1_9 - 559 zf-C4_Topoisom PF01396.14 39 4.4e-06 17.6 1.5 1 1 5.4e-07 8.9e-06 16.6 1.5 3 19 305 321 303 327 0.90 # 7108 # 8784 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=15bp;gc_cont=0.340 1_13 - 225 HTH_32 PF13565.1 77 2e-08 26.3 0.5 1 2 2.2e-07 7.1e-06 18.2 0.1 48 76 25 50 10 51 0.86 # 10306 # 10980 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.344 1_13 - 225 HTH_32 PF13565.1 77 2e-08 26.3 0.5 2 2 0.0012 0.038 6.2 0.0 29 63 136 171 100 183 0.74 # 10306 # 10980 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.344 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c512d131-da02-44b9-900c-0ce1dddba9f2 # Target file: checkm_output/bins/cSCCmec_063228/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/cSCCmec_063228/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c512d131-da02-44b9-900c-0ce1dddba9f2 checkm_output/bins/cSCCmec_063228/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Staphylococcus/training_20210111 # Date: Mon Jan 11 14:50:46 2021 # [ok]