[2021-01-07 18:58:53] INFO: CheckM v1.1.2
[2021-01-07 18:58:53] INFO: checkm taxonomy_wf genus Staphylococcus . checkm_output -x fasta --nt -t 16
[2021-01-07 18:58:53] INFO: [CheckM - taxon_set] Generate taxonomic-specific marker set.
[2021-01-07 18:58:57] INFO: Marker set for Staphylococcus contains 773 marker genes arranged in 178 sets.
[2021-01-07 18:58:57] INFO: Marker set inferred from 60 reference genomes.
[2021-01-07 18:58:57] INFO: Marker set for Staphylococcaceae contains 642 marker genes arranged in 181 sets.
[2021-01-07 18:58:57] INFO: Marker set inferred from 64 reference genomes.
[2021-01-07 18:58:57] INFO: Marker set for Bacillales contains 319 marker genes arranged in 134 sets.
[2021-01-07 18:58:57] INFO: Marker set inferred from 331 reference genomes.
[2021-01-07 18:58:57] INFO: Marker set for Bacilli contains 250 marker genes arranged in 136 sets.
[2021-01-07 18:58:57] INFO: Marker set inferred from 821 reference genomes.
[2021-01-07 18:58:57] INFO: Marker set for Firmicutes contains 172 marker genes arranged in 99 sets.
[2021-01-07 18:58:57] INFO: Marker set inferred from 1349 reference genomes.
[2021-01-07 18:58:57] INFO: Marker set for Bacteria contains 104 marker genes arranged in 58 sets.
[2021-01-07 18:58:57] INFO: Marker set inferred from 5449 reference genomes.
[2021-01-07 18:58:58] INFO: Marker set written to: checkm_output/Staphylococcus.ms
[2021-01-07 18:58:58] INFO: { Current stage: 0:00:04.701 || Total: 0:00:04.701 }
[2021-01-07 18:58:58] INFO: [CheckM - analyze] Identifying marker genes in bins.
[2021-01-07 18:59:00] INFO: Identifying marker genes in 161 bins with 16 threads:

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