Command line: /usr/local/bin/spades.py	-s	/mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/StaphPseudintermedius/cAP019372.fasta.reads.fa	-k	127	-o	/mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/StaphPseudintermedius/cAP019372	--threads	1	--only-assembler	

System information:
  SPAdes version: 3.14.1
  Python version: 2.7.12
  OS: Linux-4.4.0-178-generic-x86_64-with-Ubuntu-16.04-xenial

Output dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/StaphPseudintermedius/cAP019372
Mode: ONLY assembling (without read error correction)
Debug mode is turned OFF

Dataset parameters:
  Standard mode
  For multi-cell/isolate data we recommend to use '--isolate' option; for single-cell MDA data use '--sc'; for metagenomic data use '--meta'; for RNA-Seq use '--rna'.
  Reads:
    Library number: 1, library type: single
      left reads: not specified
      right reads: not specified
      interlaced reads: not specified
      single reads: ['/mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/StaphPseudintermedius/cAP019372.fasta.reads.fa']
      merged reads: not specified
Assembly parameters:
  k: [127]
  Repeat resolution is enabled
  Mismatch careful mode is turned OFF
  MismatchCorrector will be SKIPPED
  Coverage cutoff is turned OFF
Other parameters:
  Dir for temp files: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/StaphPseudintermedius/cAP019372/tmp
  Threads: 1
  Memory limit (in Gb): 125