# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_7 - 106 HTH_IclR PF09339.5 52 3.4e-05 12.8 0.4 1 2 5.6e-05 0.00045 9.2 0.0 20 39 5 24 2 26 0.91 # 7670 # 7987 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.396 1_7 - 106 HTH_IclR PF09339.5 52 3.4e-05 12.8 0.4 2 2 0.019 0.15 1.2 0.0 20 32 28 40 25 54 0.76 # 7670 # 7987 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.396 1_8 - 318 Rep_3 PF01051.16 222 1.2e-45 145.1 6.4 1 2 1.5e-46 1.2e-45 145.1 6.4 3 221 3 223 1 224 0.92 # 7995 # 8948 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.352 1_8 - 318 Rep_3 PF01051.16 222 1.2e-45 145.1 6.4 2 2 0.069 0.55 -1.0 0.0 125 144 272 291 238 301 0.82 # 7995 # 8948 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.352 1_6 - 378 Glyco_trans_1_2 PF13524.1 92 3.9e-12 35.8 0.0 1 1 9e-13 7.2e-12 34.9 0.0 9 85 286 364 275 371 0.89 # 5580 # 6713 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.324 1_6 - 378 ACT_7 PF13840.1 65 8.4e-05 11.5 0.5 1 1 3.4e-05 0.00027 9.9 0.1 8 48 2 41 1 41 0.81 # 5580 # 6713 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.324 1_6 - 378 Glyco_trans_4_2 PF13477.1 139 7.5e-17 50.8 0.6 1 1 1.9e-17 1.6e-16 49.8 0.6 1 136 2 154 2 157 0.75 # 5580 # 6713 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.324 1_7 - 106 MerR_1 PF13411.1 69 2e-05 13.7 0.0 1 1 4.2e-06 3.3e-05 13.0 0.0 2 28 5 31 4 61 0.88 # 7670 # 7987 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.396 1_4 - 339 Peptidase_M50B PF13398.1 200 8.7e-06 14.5 21.1 1 2 0.00085 0.0068 5.1 8.1 73 154 38 123 16 140 0.55 # 3596 # 4612 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=14bp;gc_cont=0.302 1_4 - 339 Peptidase_M50B PF13398.1 200 8.7e-06 14.5 21.1 2 2 8.3e-07 6.7e-06 14.9 5.1 80 163 173 256 167 287 0.84 # 3596 # 4612 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=14bp;gc_cont=0.302 1_6 - 378 Glyco_trans_1_4 PF13692.1 135 1.6e-23 72.7 0.0 1 1 3.6e-24 2.9e-23 71.9 0.0 6 135 201 341 197 341 0.82 # 5580 # 6713 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.324 1_6 - 378 IF2_N PF04760.10 54 7e-05 11.9 0.6 1 1 2.9e-05 0.00023 10.2 0.0 2 24 27 49 19 54 0.94 # 5580 # 6713 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.324 1_6 - 378 Glycos_transf_1 PF00534.15 172 4e-37 116.6 0.0 1 1 8.6e-38 6.8e-37 115.8 0.0 10 170 192 353 187 355 0.92 # 5580 # 6713 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.324 1_7 - 106 HTH_17 PF12728.2 51 3.5e-06 16.7 0.0 1 1 5.9e-07 4.7e-06 16.2 0.0 2 28 4 30 3 50 0.82 # 7670 # 7987 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.396 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/ee0e4b45-12f5-4dfe-9966-aaa34d7ca190 # Target file: checkm_output/bins/pn99/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn99/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ee0e4b45-12f5-4dfe-9966-aaa34d7ca190 checkm_output/bins/pn99/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:24:20 2017 # [ok]