# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_14 - 577 HTH_38 PF13936.1 44 1.4e-06 19.4 0.0 1 1 9.4e-08 3.5e-06 18.1 0.0 14 43 12 41 7 42 0.85 # 12343 # 14073 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_37 - 85 zf-GRF PF06839.7 45 4.3e-05 15.0 2.2 1 1 1.7e-06 6.1e-05 14.5 2.2 3 32 4 36 2 40 0.89 # 32260 # 32514 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_8 - 324 MethyltransfD12 PF02086.10 260 1.6e-61 199.5 0.0 1 1 5.1e-63 1.9e-61 199.2 0.0 1 259 8 265 8 266 0.93 # 4374 # 5345 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_14 - 577 Sigma70_r4_2 PF08281.7 54 1.4e-06 19.3 0.0 1 1 1.2e-07 4.4e-06 17.7 0.0 23 49 15 41 13 41 0.91 # 12343 # 14073 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_14 - 577 Terminase_5 PF06056.7 58 4.8e-28 88.1 0.5 1 1 2.5e-29 9.2e-28 87.2 0.5 2 58 7 63 6 63 0.98 # 12343 # 14073 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_2 - 289 TIGR00575 TIGR00575 652 8.4e-09 25.4 0.0 1 1 2.8e-10 1e-08 25.1 0.0 588 652 2 66 1 66 0.93 # 1224 # 2090 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.423 1_14 - 577 HTH_Tnp_1 PF01527.15 76 4.4e-06 18.2 0.1 1 1 2.8e-07 1e-05 17.0 0.1 21 62 16 56 7 69 0.78 # 12343 # 14073 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_37 - 85 Ogr_Delta PF04606.7 47 2.2e-15 47.6 5.4 1 1 7.2e-17 2.7e-15 47.4 5.4 1 45 3 49 3 51 0.94 # 32260 # 32514 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_11 - 333 DUF955 PF06114.8 122 1.2e-10 32.6 0.0 1 1 5.9e-12 2.2e-10 31.9 0.0 2 85 143 234 142 249 0.88 # 9208 # 10206 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.463 1_4 - 128 HTH_3 PF01381.17 55 4.1e-10 31.0 0.1 1 1 1.9e-11 7e-10 30.2 0.1 1 47 9 55 9 56 0.98 # 2746 # 3129 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.484 1_14 - 577 HTH_23 PF13384.1 50 1.6e-10 32.0 0.4 1 1 1.9e-11 7.1e-10 29.9 0.0 6 40 7 41 3 46 0.93 # 12343 # 14073 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_14 - 577 HTH_7 PF02796.10 45 2.6e-05 15.6 0.2 1 2 2e-05 0.00074 11.0 0.0 12 39 9 36 8 40 0.95 # 12343 # 14073 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_14 - 577 HTH_7 PF02796.10 45 2.6e-05 15.6 0.2 2 2 0.016 0.59 1.7 0.1 2 20 103 122 103 122 0.93 # 12343 # 14073 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_4 - 128 HTH_19 PF12844.2 64 3.1e-11 34.8 0.0 1 1 1.1e-12 4.2e-11 34.3 0.0 1 61 6 65 6 68 0.91 # 2746 # 3129 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.484 1_14 - 577 HTH_29 PF13551.1 112 6.3e-07 21.1 0.8 1 2 2.8e-07 1e-05 17.2 0.0 3 77 10 73 8 92 0.73 # 12343 # 14073 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_14 - 577 HTH_29 PF13551.1 112 6.3e-07 21.1 0.8 2 2 0.011 0.39 2.4 0.3 31 76 83 129 79 154 0.70 # 12343 # 14073 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_9 - 434 PAPS_reduct PF01507.14 174 1.8e-30 97.5 0.0 1 1 9.5e-32 3.5e-30 96.6 0.0 1 172 40 293 40 295 0.93 # 5345 # 6646 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_9 - 434 QueC PF06508.8 210 1.8e-07 22.1 0.1 1 2 2.1e-08 7.8e-07 20.0 0.0 1 62 40 102 40 127 0.90 # 5345 # 6646 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_9 - 434 QueC PF06508.8 210 1.8e-07 22.1 0.1 2 2 0.053 1.9 -0.9 0.0 157 201 256 297 254 301 0.71 # 5345 # 6646 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_9 - 434 NAD_synthase PF02540.12 242 2.9e-06 17.8 0.0 1 2 1e-06 3.7e-05 14.2 0.0 17 77 37 96 21 177 0.86 # 5345 # 6646 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_9 - 434 NAD_synthase PF02540.12 242 2.9e-06 17.8 0.0 2 2 0.032 1.2 -0.6 0.0 147 173 253 280 251 285 0.83 # 5345 # 6646 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_14 - 577 HTH_28 PF13518.1 52 2.5e-07 22.2 0.1 1 1 1.7e-08 6.4e-07 20.9 0.1 2 35 8 41 7 46 0.92 # 12343 # 14073 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_4 - 128 HTH_31 PF13560.1 64 2.8e-08 25.5 0.2 1 1 7.5e-10 2.8e-08 25.5 0.2 2 51 5 53 4 57 0.94 # 2746 # 3129 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.484 1_14 - 577 Terminase_6 PF03237.10 384 3.7e-82 267.5 0.4 1 1 1.2e-83 4.4e-82 267.3 0.4 1 384 144 561 144 561 0.95 # 12343 # 14073 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_14 - 577 DUF1323 PF07037.6 122 3.4e-05 15.5 0.0 1 1 3.1e-06 0.00011 13.9 0.0 3 46 21 66 19 85 0.83 # 12343 # 14073 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_14 - 577 HTH_17 PF12728.2 51 2.6e-05 16.0 0.1 1 2 6.7e-05 0.0025 9.7 0.0 4 22 21 39 19 46 0.87 # 12343 # 14073 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_14 - 577 HTH_17 PF12728.2 51 2.6e-05 16.0 0.1 2 2 0.0067 0.25 3.2 0.1 26 47 145 166 130 169 0.74 # 12343 # 14073 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_37 - 85 Zn_Tnp_IS1595 PF12760.2 46 0.00011 13.5 3.1 1 1 3.9e-06 0.00014 13.2 3.1 19 45 2 39 1 40 0.86 # 32260 # 32514 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_9 - 434 Asn_synthase PF00733.16 255 8.7e-06 16.8 0.0 1 2 7.5e-07 2.8e-05 15.2 0.0 15 87 36 111 20 128 0.87 # 5345 # 6646 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_9 - 434 Asn_synthase PF00733.16 255 8.7e-06 16.8 0.0 2 2 0.083 3.1 -1.3 0.0 120 150 219 251 195 332 0.72 # 5345 # 6646 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_14 - 577 Phage_terminase PF10668.4 60 3.7e-06 18.2 0.1 1 1 3.1e-07 1.1e-05 16.7 0.1 9 51 8 47 7 60 0.81 # 12343 # 14073 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/dcc72e67-cfc1-4586-b08b-d1657d093a00 # Target file: checkm_output/bins/pn93/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn93/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/dcc72e67-cfc1-4586-b08b-d1657d093a00 checkm_output/bins/pn93/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:24:18 2017 # [ok]