# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_45 - 199 HTH_38 PF13936.1 44 0.00044 11.9 1.3 1 1 1.1e-05 0.0006 11.5 0.0 13 39 161 188 153 191 0.82 # 45866 # 46462 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_47 - 214 CbiA PF01656.18 195 2.1e-11 35.6 0.1 1 1 5.1e-13 2.8e-11 35.2 0.1 1 174 4 154 4 175 0.71 # 47591 # 48232 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.402 1_49 - 241 Rep_3 PF01051.16 222 4.7e-49 159.0 0.0 1 1 9.8e-51 5.5e-49 158.8 0.0 3 213 17 230 15 235 0.95 # 49271 # 49993 # -1 # ID=1_49;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.436 1_52 - 216 Terminase_5 PF06056.7 58 0.00024 12.7 0.0 1 1 1.3e-05 0.00071 11.3 0.0 16 44 115 143 113 150 0.93 # 52011 # 52658 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_52 - 216 HTH_Tnp_1 PF01527.15 76 6.6e-23 72.6 0.0 1 1 3.6e-24 2e-22 71.1 0.0 2 69 91 162 90 169 0.87 # 52011 # 52658 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_47 - 214 MipZ PF09140.6 261 4.5e-08 24.5 3.0 1 3 0.00091 0.051 4.7 0.3 5 24 6 25 2 37 0.72 # 47591 # 48232 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.402 1_47 - 214 MipZ PF09140.6 261 4.5e-08 24.5 3.0 2 3 3.3e-08 1.9e-06 19.2 0.1 71 133 46 108 29 125 0.84 # 47591 # 48232 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.402 1_47 - 214 MipZ PF09140.6 261 4.5e-08 24.5 3.0 3 3 0.036 2 -0.6 0.0 212 255 167 210 157 213 0.75 # 47591 # 48232 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.402 1_26 - 93 MerR_1 PF13411.1 69 0.00045 12.1 0.0 1 1 1.8e-05 0.001 11.0 0.0 2 29 43 70 42 75 0.86 # 27052 # 27330 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.473 1_52 - 216 LZ_Tnp_IS481 PF13011.1 85 2.8e-05 16.6 0.0 1 2 0.0052 0.29 3.7 0.0 27 55 20 48 11 52 0.84 # 52011 # 52658 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_52 - 216 LZ_Tnp_IS481 PF13011.1 85 2.8e-05 16.6 0.0 2 2 3.5e-05 0.002 10.6 0.0 15 54 102 141 99 166 0.87 # 52011 # 52658 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_50 - 524 Mnd1 PF03962.10 188 0.054 5.2 7.9 1 2 0.0004 0.022 6.5 4.6 69 135 28 99 12 111 0.69 # 50073 # 51644 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.565 1_50 - 524 Mnd1 PF03962.10 188 0.054 5.2 7.9 2 2 0.081 4.5 -1.1 0.1 111 166 386 442 346 457 0.63 # 50073 # 51644 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.565 1_26 - 93 HTH_3 PF01381.17 55 3.9e-10 31.6 0.0 1 2 0.011 0.32 3.1 0.0 28 41 12 25 11 27 0.87 # 27052 # 27330 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.473 1_26 - 93 HTH_3 PF01381.17 55 3.9e-10 31.6 0.0 2 2 4.7e-10 1.3e-08 26.7 0.0 1 43 33 75 33 78 0.92 # 27052 # 27330 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.473 1_45 - 199 HTH_3 PF01381.17 55 9.5e-05 14.4 0.7 1 1 8.2e-06 0.00023 13.1 0.0 1 33 161 195 161 198 0.87 # 45866 # 46462 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_52 - 216 HTH_23 PF13384.1 50 3.6e-11 34.6 0.0 1 2 2e-05 0.00056 11.7 0.0 10 46 10 47 8 48 0.85 # 52011 # 52658 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_52 - 216 HTH_23 PF13384.1 50 3.6e-11 34.6 0.0 2 2 3e-08 8.4e-07 20.7 0.0 10 46 104 141 99 145 0.83 # 52011 # 52658 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_45 - 199 HTH_23 PF13384.1 50 6.4e-06 17.9 0.1 1 1 6.2e-07 1.7e-05 16.5 0.1 10 38 160 190 152 195 0.77 # 45866 # 46462 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_45 - 199 HTH_7 PF02796.10 45 0.00025 13.0 0.2 1 1 1.3e-05 0.00073 11.5 0.1 7 43 156 191 150 193 0.75 # 45866 # 46462 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_26 - 93 HTH_19 PF12844.2 64 5.6e-08 24.9 0.1 1 2 0.021 1.2 1.5 0.0 30 40 11 21 8 27 0.78 # 27052 # 27330 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.473 1_26 - 93 HTH_19 PF12844.2 64 5.6e-08 24.9 0.1 2 2 1.2e-08 6.6e-07 21.5 0.0 4 42 33 71 33 87 0.88 # 27052 # 27330 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.473 1_52 - 216 HTH_29 PF13551.1 112 4.4e-05 15.7 0.0 1 2 0.007 0.39 3.0 0.0 4 42 10 48 8 59 0.85 # 52011 # 52658 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_52 - 216 HTH_29 PF13551.1 112 4.4e-05 15.7 0.0 2 2 3.9e-05 0.0022 10.3 0.0 15 41 115 141 101 171 0.84 # 52011 # 52658 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_50 - 524 DDE_Tnp_IS66 PF03050.9 271 3.9e-104 339.7 0.2 1 2 0.0085 0.47 1.6 2.5 159 207 35 86 14 125 0.59 # 50073 # 51644 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.565 1_50 - 524 DDE_Tnp_IS66 PF03050.9 271 3.9e-104 339.7 0.2 2 2 7e-106 3.9e-104 339.7 0.2 1 270 186 472 186 473 0.99 # 50073 # 51644 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.565 1_47 - 214 TIGR01968 TIGR01968 261 0.0003 11.9 1.0 1 2 1.9e-05 0.0011 10.1 0.3 7 50 7 44 2 48 0.72 # 47591 # 48232 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.402 1_47 - 214 TIGR01968 TIGR01968 261 0.0003 11.9 1.0 2 2 0.026 1.4 -0.1 0.0 104 140 66 102 51 128 0.73 # 47591 # 48232 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.402 1_45 - 199 HTH_Tnp_IS1 PF12759.2 46 0.00032 12.2 0.5 1 1 1.3e-05 0.00072 11.1 0.5 19 41 167 189 157 193 0.87 # 45866 # 46462 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_52 - 216 HTH_28 PF13518.1 52 2.5e-09 29.2 0.0 1 2 0.0011 0.032 6.5 0.0 5 41 10 47 8 52 0.83 # 52011 # 52658 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_52 - 216 HTH_28 PF13518.1 52 2.5e-09 29.2 0.0 2 2 5.4e-08 1.5e-06 20.3 0.0 3 41 102 141 100 145 0.82 # 52011 # 52658 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_45 - 199 HTH_28 PF13518.1 52 3.2e-05 16.0 0.1 1 1 4.9e-06 0.00014 14.0 0.0 9 37 166 194 156 197 0.85 # 45866 # 46462 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_26 - 93 HTH_31 PF13560.1 64 1e-09 30.6 0.0 1 1 1.4e-10 3.9e-09 28.8 0.0 7 50 34 76 32 78 0.90 # 27052 # 27330 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.473 1_45 - 199 HTH_31 PF13560.1 64 5.3e-05 15.5 1.5 1 1 6.2e-06 0.00017 13.9 0.0 5 36 160 191 159 196 0.91 # 45866 # 46462 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_12 - 95 Transposase_mut PF00872.13 381 7.7e-05 13.4 0.1 1 1 1.4e-06 7.7e-05 13.4 0.1 2 57 2 58 1 82 0.76 # 12805 # 13089 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_9 - 410 Glyco_transf_9 PF01075.12 247 1.8e-08 25.9 0.0 1 1 5.6e-10 3.2e-08 25.1 0.0 104 208 215 317 198 336 0.85 # 5717 # 6946 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.518 1_45 - 199 RuvB_N PF05496.7 234 3.2e-05 15.1 0.0 1 1 8.7e-07 4.9e-05 14.5 0.0 78 133 28 85 22 105 0.82 # 45866 # 46462 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_47 - 214 VirC1 PF07015.6 231 9.7e-05 13.6 0.1 1 2 0.00045 0.025 5.7 0.0 1 28 1 28 1 36 0.83 # 47591 # 48232 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.402 1_47 - 214 VirC1 PF07015.6 231 9.7e-05 13.6 0.1 2 2 0.00033 0.018 6.1 0.0 89 190 79 181 59 200 0.77 # 47591 # 48232 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.402 1_45 - 199 HTH_Tnp_ISL3 PF13542.1 52 0.00026 12.3 0.1 1 1 1.2e-05 0.00068 10.9 0.1 24 49 166 191 163 193 0.86 # 45866 # 46462 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_26 - 93 MerR PF00376.18 38 0.0001 14.0 0.0 1 1 4.2e-06 0.00023 12.8 0.0 4 26 46 68 45 71 0.92 # 27052 # 27330 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.473 1_13 - 106 TIGR00742 TIGR00742 318 0.00014 13.0 0.1 1 2 0.015 0.86 0.6 0.0 8 35 1 30 1 37 0.66 # 13591 # 13908 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.358 1_13 - 106 TIGR00742 TIGR00742 318 0.00014 13.0 0.1 2 2 1.5e-05 0.00083 10.5 0.1 84 118 60 93 41 100 0.78 # 13591 # 13908 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.358 1_41 - 517 HHH_4 PF14490.1 94 0.0003 12.7 0.1 1 2 0.00058 0.033 6.1 0.0 51 79 186 214 173 219 0.87 # 41799 # 43349 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_41 - 517 HHH_4 PF14490.1 94 0.0003 12.7 0.1 2 2 0.0029 0.16 3.9 0.0 51 79 273 301 233 309 0.79 # 41799 # 43349 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_10 - 1594 Pup_ligase PF03136.10 444 0.00041 11.1 6.7 1 4 0.035 2 -1.1 0.1 64 82 392 410 364 416 0.79 # 6930 # 11711 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.526 1_10 - 1594 Pup_ligase PF03136.10 444 0.00041 11.1 6.7 2 4 0.0018 0.1 3.2 0.1 63 82 464 483 433 490 0.78 # 6930 # 11711 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.526 1_10 - 1594 Pup_ligase PF03136.10 444 0.00041 11.1 6.7 3 4 0.00042 0.023 5.3 0.1 64 82 538 556 507 565 0.79 # 6930 # 11711 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.526 1_10 - 1594 Pup_ligase PF03136.10 444 0.00041 11.1 6.7 4 4 0.0021 0.11 3.0 0.1 64 86 611 633 582 645 0.80 # 6930 # 11711 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.526 1_45 - 199 LacI PF00356.16 46 5.8e-08 24.4 0.0 1 1 2.3e-09 1.3e-07 23.3 0.0 2 26 172 196 171 198 0.90 # 45866 # 46462 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/64172d12-3b84-45dc-b502-b3779156c2e4 # Target file: checkm_output/bins/pn85/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn85/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/64172d12-3b84-45dc-b502-b3779156c2e4 checkm_output/bins/pn85/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:24:03 2017 # [ok]