# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_24 - 344 KaiC PF06745.8 227 0.00048 11.1 0.1 1 1 1.7e-05 0.00085 10.3 0.1 8 37 152 181 147 187 0.88 # 15098 # 16129 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 1_24 - 344 ABC_tran PF00005.22 137 2.7e-05 16.4 0.0 1 1 1.5e-06 7.5e-05 15.0 0.0 7 32 159 184 155 223 0.85 # 15098 # 16129 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 1_24 - 344 MobB PF03205.9 140 6.4e-05 14.6 0.0 1 1 2.3e-06 0.00012 13.8 0.0 2 40 165 202 164 223 0.87 # 15098 # 16129 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 1_48 - 117 HTH_8 PF02954.14 42 8.2e-06 17.3 0.5 1 1 3.2e-07 1.6e-05 16.4 0.5 12 39 61 87 57 88 0.83 # 32402 # 32752 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_9 - 220 CbiA PF01656.18 195 4.5e-19 60.5 0.0 1 1 1.2e-20 6e-19 60.1 0.0 1 184 5 172 5 187 0.80 # 4091 # 4750 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_1 - 299 Rep_3 PF01051.16 222 5.1e-36 116.2 3.8 1 1 1.6e-37 7.8e-36 115.6 3.8 2 222 9 259 8 259 0.86 # 351 # 1247 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.331 1_9 - 220 YhjQ PF06564.7 244 9e-05 13.8 0.0 1 2 0.0012 0.059 4.6 0.1 3 30 4 31 2 40 0.83 # 4091 # 4750 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_9 - 220 YhjQ PF06564.7 244 9e-05 13.8 0.0 2 2 0.0002 0.0097 7.1 0.0 109 154 74 117 51 127 0.84 # 4091 # 4750 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_24 - 344 AAA_23 PF13476.1 202 0.00017 13.8 0.1 1 1 6.3e-06 0.00031 13.0 0.1 21 38 165 182 152 185 0.88 # 15098 # 16129 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 1_24 - 344 Zeta_toxin PF06414.7 201 1.1e-05 16.5 0.0 1 1 3.5e-07 1.7e-05 15.8 0.0 10 59 156 208 148 231 0.83 # 15098 # 16129 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 1_23 - 612 TraG-D_C PF12696.2 128 1.7e-27 87.7 0.0 1 1 5.9e-29 2.9e-27 87.0 0.0 2 127 416 534 415 535 0.87 # 13260 # 15095 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.420 1_9 - 220 MipZ PF09140.6 261 8.3e-13 39.8 0.1 1 2 2.7e-08 1.3e-06 19.5 0.0 2 59 4 60 3 68 0.91 # 4091 # 4750 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_9 - 220 MipZ PF09140.6 261 8.3e-13 39.8 0.1 2 2 1.4e-07 7e-06 17.1 0.0 89 129 71 111 64 167 0.87 # 4091 # 4750 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_14 - 718 zinc-ribbons_6 PF07191.7 70 0.00037 12.2 0.2 1 1 1.5e-05 0.00071 11.3 0.2 3 29 634 660 632 683 0.83 # 7681 # 9834 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_14 - 718 zf-C4_Topoisom PF01396.14 39 0.001 10.5 1.6 1 1 4.8e-05 0.0023 9.4 1.6 4 24 635 654 633 661 0.80 # 7681 # 9834 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_9 - 220 cobW PF02492.14 178 0.00043 11.6 0.0 1 1 3.4e-05 0.0017 9.7 0.0 54 102 25 99 4 171 0.78 # 4091 # 4750 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_24 - 344 AAA_16 PF13191.1 185 0.00059 11.7 0.0 1 1 1.7e-05 0.00083 11.3 0.0 22 54 161 194 148 290 0.78 # 15098 # 16129 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 1_24 - 344 AAA_22 PF13401.1 131 0.00034 12.7 0.0 1 1 1.2e-05 0.00059 11.9 0.0 5 29 164 188 160 237 0.71 # 15098 # 16129 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 1_24 - 344 AAA_29 PF13555.1 62 4.9e-05 14.8 0.0 1 1 2.1e-06 0.0001 13.7 0.0 20 43 160 183 134 186 0.82 # 15098 # 16129 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 1_17 - 135 A2L_zn_ribbon PF08792.5 33 0.0024 9.3 7.4 1 1 8.8e-05 0.0043 8.5 7.4 6 28 88 109 86 113 0.88 # 10840 # 11244 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_48 - 117 HTH_3 PF01381.17 55 0.00011 13.9 0.1 1 1 4.1e-06 0.0002 13.1 0.1 9 49 68 106 59 111 0.81 # 32402 # 32752 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_48 - 117 HTH_7 PF02796.10 45 0.0004 12.2 0.1 1 1 1.8e-05 0.0009 11.1 0.0 24 43 69 88 60 90 0.88 # 32402 # 32752 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_44 - 76 HTH_19 PF12844.2 64 0.00018 13.5 0.2 1 1 5e-06 0.00024 13.1 0.2 2 20 8 26 7 55 0.79 # 30138 # 30365 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.360 1_23 - 612 TrwB_AAD_bind PF10412.4 386 3.6e-21 67.0 0.0 1 1 1.2e-22 5.8e-21 66.3 0.0 165 380 331 548 306 552 0.85 # 13260 # 15095 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.420 1_9 - 220 TIGR01968 TIGR01968 261 5.1e-08 24.1 1.7 1 2 6.4e-07 3.1e-05 15.0 0.8 2 39 3 40 2 48 0.94 # 4091 # 4750 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_9 - 220 TIGR01968 TIGR01968 261 5.1e-08 24.1 1.7 2 2 8.1e-05 0.004 8.1 0.0 101 142 70 111 66 121 0.84 # 4091 # 4750 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_24 - 344 DUF258 PF03193.11 161 0.00012 13.2 0.0 1 1 3.8e-06 0.00019 12.6 0.0 31 59 158 187 143 221 0.82 # 15098 # 16129 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 1_17 - 135 zf-CHC2 PF01807.15 98 0.00027 12.4 1.3 1 1 7.5e-06 0.00037 12.0 0.3 41 65 89 113 80 127 0.88 # 10840 # 11244 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_48 - 117 HTH_28 PF13518.1 52 0.00018 13.5 0.3 1 1 5.5e-06 0.00027 12.9 0.3 5 33 58 87 56 88 0.87 # 32402 # 32752 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_24 - 344 DEAD PF00270.24 169 0.00011 13.6 0.0 1 1 3.8e-06 0.00019 12.9 0.0 6 33 154 182 151 246 0.77 # 15098 # 16129 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 1_24 - 344 T2SE PF00437.15 272 1.3e-52 170.2 0.0 1 1 3.4e-54 1.7e-52 169.9 0.0 12 266 25 311 16 316 0.88 # 15098 # 16129 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 1_24 - 344 UPF0079 PF02367.12 123 0.00022 12.8 0.0 1 1 8.9e-06 0.00044 11.8 0.0 8 38 156 186 151 195 0.83 # 15098 # 16129 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 1_24 - 344 AAA_17 PF13207.1 121 2.1e-05 17.3 0.0 1 1 9.3e-07 4.6e-05 16.2 0.0 2 44 166 208 165 248 0.80 # 15098 # 16129 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 1_9 - 220 AAA_25 PF13481.1 194 8.4e-05 13.9 0.1 1 1 5.5e-06 0.00013 13.2 0.1 34 64 3 35 1 55 0.77 # 4091 # 4750 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_24 - 344 AAA_25 PF13481.1 194 0.00015 13.1 0.0 1 1 8.6e-06 0.00021 12.6 0.0 22 51 152 181 137 244 0.89 # 15098 # 16129 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 1_9 - 220 VirC1 PF07015.6 231 7.9e-09 26.8 0.0 1 1 2.4e-10 1.2e-08 26.2 0.0 2 96 3 93 2 110 0.74 # 4091 # 4750 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_34 - 74 Penicillinase_R PF03965.11 115 0.00013 14.0 0.0 1 1 3.3e-06 0.00016 13.7 0.0 47 111 5 67 3 70 0.92 # 25107 # 25328 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.459 1_24 - 344 AAA_33 PF13671.1 143 8e-06 17.7 0.0 1 2 0.064 3.1 -0.4 0.0 7 39 96 127 93 163 0.79 # 15098 # 16129 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 1_24 - 344 AAA_33 PF13671.1 143 8e-06 17.7 0.0 2 2 7.8e-07 3.8e-05 15.5 0.0 2 24 166 188 165 257 0.70 # 15098 # 16129 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 1_23 - 612 T4SS-DNA_transf PF02534.9 469 3.4e-145 476.0 0.0 1 1 8.7e-147 4.2e-145 475.7 0.0 2 461 102 571 101 578 0.98 # 13260 # 15095 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.420 1_24 - 344 ATP_bind_1 PF03029.12 238 0.00022 12.7 0.0 1 1 6.8e-06 0.00033 12.1 0.0 2 23 169 190 168 206 0.87 # 15098 # 16129 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 1_14 - 718 Toprim_Crpt PF13342.1 62 3.3e-20 63.5 2.5 1 1 6.8e-22 3.3e-20 63.5 2.5 1 60 652 711 652 713 0.92 # 7681 # 9834 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_35 - 169 TIGR00922 TIGR00922 172 6e-10 30.8 0.0 1 1 2.4e-11 1.2e-09 29.8 0.0 56 113 52 109 3 140 0.87 # 25279 # 25785 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.408 1_31 - 918 AAA_10 PF12846.2 304 2.2e-35 114.4 0.0 1 1 7.7e-37 3.8e-35 113.6 0.0 3 294 539 825 538 832 0.93 # 21365 # 24118 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.444 1_9 - 220 ArsA_ATPase PF02374.10 305 1.1e-06 19.8 0.5 1 1 3.1e-08 1.5e-06 19.3 0.3 2 51 3 53 2 70 0.88 # 4091 # 4750 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_9 - 220 AAA_31 PF13614.1 157 4.9e-07 21.7 0.0 1 2 0.00014 0.0069 8.2 0.0 1 57 3 59 3 74 0.75 # 4091 # 4750 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_9 - 220 AAA_31 PF13614.1 157 4.9e-07 21.7 0.0 2 2 1.4e-05 0.00068 11.5 0.0 112 151 75 113 67 115 0.87 # 4091 # 4750 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_24 - 344 IstB_IS21 PF01695.12 178 0.00031 12.1 0.0 1 1 1.3e-05 0.00064 11.0 0.0 45 66 161 182 140 186 0.92 # 15098 # 16129 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/fa63f9f6-4453-4fac-a485-4fdf3d78aa39 # Target file: checkm_output/bins/pn66/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn66/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fa63f9f6-4453-4fac-a485-4fdf3d78aa39 checkm_output/bins/pn66/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:23:40 2017 # [ok]