# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 655 KaiC PF06745.8 227 2.2e-05 13.4 0.0 1 1 4e-06 4.4e-05 12.4 0.0 18 53 256 291 252 293 0.93 # 1620 # 3584 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_4 - 655 FtsK_SpoIIIE PF01580.13 205 9.4e-05 11.7 0.0 1 1 2.4e-05 0.00026 10.2 0.0 14 59 231 279 220 282 0.78 # 1620 # 3584 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_3 - 244 MarR PF01047.17 59 1.6e-05 14.4 0.0 1 1 2.9e-06 3.1e-05 13.5 0.0 36 59 53 76 25 76 0.94 # 889 # 1620 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_7 - 562 DUF3584 PF12128.3 1201 0.014 2.3 22.2 1 2 7.8e-05 0.00086 6.4 3.2 598 657 320 379 313 385 0.90 # 5566 # 7251 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_7 - 562 DUF3584 PF12128.3 1201 0.014 2.3 22.2 2 2 0.0027 0.029 1.3 11.3 608 673 399 464 394 471 0.82 # 5566 # 7251 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_3 - 244 PadR PF03551.9 75 2.5e-05 13.9 0.0 1 1 7.1e-06 7.8e-05 12.3 0.0 34 69 51 85 41 89 0.93 # 889 # 1620 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_4 - 655 TraG-D_C PF12696.2 128 4.1e-09 26.2 0.0 1 1 6.3e-10 6.9e-09 25.5 0.0 1 127 465 591 465 592 0.79 # 1620 # 3584 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_3 - 244 Replic_Relax PF13814.1 191 4.4e-10 29.5 0.0 1 1 1.1e-10 1.2e-09 28.1 0.0 1 174 25 179 25 186 0.81 # 889 # 1620 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_3 - 244 HTH_27 PF13463.1 68 5.3e-07 19.8 0.0 1 2 7.8e-06 8.5e-05 12.7 0.0 35 60 50 76 24 85 0.78 # 889 # 1620 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_3 - 244 HTH_27 PF13463.1 68 5.3e-07 19.8 0.0 2 2 0.0025 0.028 4.7 0.0 6 28 133 157 129 161 0.88 # 889 # 1620 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_4 - 655 TrwB_AAD_bind PF10412.4 386 5.2e-07 18.3 0.0 1 2 4.9e-07 5.4e-06 14.9 0.0 14 57 256 300 247 313 0.85 # 1620 # 3584 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_4 - 655 TrwB_AAD_bind PF10412.4 386 5.2e-07 18.3 0.0 2 2 0.0085 0.093 1.0 0.0 296 368 520 593 427 606 0.85 # 1620 # 3584 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_3 - 244 MarR_2 PF12802.2 62 4e-06 16.3 0.7 1 1 7.3e-07 8e-06 15.4 0.3 15 62 29 75 5 75 0.82 # 889 # 1620 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_3 - 244 TrmB PF01978.14 68 8.4e-05 12.1 0.1 1 1 3e-05 0.00033 10.2 0.0 23 55 34 67 28 72 0.85 # 889 # 1620 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_4 - 655 AAA_10 PF12846.2 304 1.3e-15 47.4 0.0 1 1 1.7e-15 1.8e-14 43.5 0.0 3 287 259 533 257 543 0.78 # 1620 # 3584 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_7 - 562 AAA_13 PF13166.1 712 0.045 1.8 21.5 1 2 0.001 0.011 3.8 4.6 406 458 325 377 302 386 0.53 # 5566 # 7251 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_7 - 562 AAA_13 PF13166.1 712 0.045 1.8 21.5 2 2 0.00098 0.011 3.9 8.8 83 158 399 458 382 495 0.50 # 5566 # 7251 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/71433766-2927-4ec9-ad43-edf631fcedb2 # Target file: checkm_output/bins/pn34/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn34/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/71433766-2927-4ec9-ad43-edf631fcedb2 checkm_output/bins/pn34/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:22:56 2017 # [ok]