# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_19 - 228 Cons_hypoth95 PF03602.10 183 2.8e-06 18.2 0.0 1 2 0.00025 0.0085 6.9 0.0 112 146 18 54 5 82 0.66 # 15668 # 16351 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_19 - 228 Cons_hypoth95 PF03602.10 183 2.8e-06 18.2 0.0 2 2 3.9e-05 0.0013 9.5 0.0 41 62 162 183 145 219 0.78 # 15668 # 16351 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_19 - 228 TIGR00095 TIGR00095 194 4.1e-05 14.3 0.0 1 2 0.00059 0.02 5.6 0.0 122 138 18 34 3 79 0.71 # 15668 # 16351 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_19 - 228 TIGR00095 TIGR00095 194 4.1e-05 14.3 0.0 2 2 0.00024 0.0083 6.8 0.0 53 86 164 199 155 218 0.77 # 15668 # 16351 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_33 - 744 MobB PF03205.9 140 9.8e-05 13.5 0.1 1 1 6.6e-06 0.00022 12.3 0.1 7 33 192 218 188 223 0.87 # 27416 # 29647 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_34 - 1569 AAA_19 PF13245.1 76 2.8e-07 21.7 0.3 1 1 8.2e-09 2.8e-07 21.7 0.3 8 76 984 1049 977 1049 0.78 # 29647 # 34353 # 1 # ID=1_34;partial=01;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_19 - 228 MethyltransfD12 PF02086.10 260 0.00012 12.9 0.0 1 2 0.013 0.44 1.3 0.0 175 188 18 31 10 89 0.85 # 15668 # 16351 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_19 - 228 MethyltransfD12 PF02086.10 260 0.00012 12.9 0.0 2 2 4e-05 0.0014 9.5 0.0 20 46 163 189 148 197 0.78 # 15668 # 16351 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_19 - 228 Methyltransf_26 PF13659.1 117 2.2e-13 41.7 0.1 1 2 1.5e-08 5e-07 21.2 0.0 54 114 4 71 2 74 0.76 # 15668 # 16351 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_19 - 228 Methyltransf_26 PF13659.1 117 2.2e-13 41.7 0.1 2 2 1e-07 3.5e-06 18.5 0.0 4 44 167 206 164 222 0.82 # 15668 # 16351 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_34 - 1569 AAA_30 PF13604.1 196 5.7e-45 144.7 14.8 1 2 0.00012 0.0039 8.1 3.1 8 127 433 546 431 565 0.80 # 29647 # 34353 # 1 # ID=1_34;partial=01;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_34 - 1569 AAA_30 PF13604.1 196 5.7e-45 144.7 14.8 2 2 3.8e-45 1.3e-43 140.2 3.9 2 187 971 1159 970 1163 0.92 # 29647 # 34353 # 1 # ID=1_34;partial=01;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_33 - 744 TraG-D_C PF12696.2 128 1.2e-22 71.5 0.0 1 1 8.4e-24 2.8e-22 70.3 0.0 1 126 420 541 420 543 0.83 # 27416 # 29647 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_19 - 228 UPF0020 PF01170.13 180 1.1e-06 19.7 0.0 1 2 7e-05 0.0024 8.8 0.0 102 123 16 37 5 89 0.71 # 15668 # 16351 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_19 - 228 UPF0020 PF01170.13 180 1.1e-06 19.7 0.0 2 2 6.3e-05 0.0021 9.0 0.0 28 54 163 189 158 220 0.67 # 15668 # 16351 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_34 - 1569 AAA PF00004.24 132 0.00023 12.8 0.1 1 2 0.032 1.1 0.9 0.0 53 89 102 140 84 163 0.70 # 29647 # 34353 # 1 # ID=1_34;partial=01;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_34 - 1569 AAA PF00004.24 132 0.00023 12.8 0.1 2 2 0.00035 0.012 7.2 0.0 3 74 992 1080 990 1091 0.54 # 29647 # 34353 # 1 # ID=1_34;partial=01;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_19 - 228 N6_N4_Mtase PF01555.13 231 2.9e-37 119.7 0.0 1 1 3.7e-36 1.3e-34 111.1 0.0 1 228 21 200 21 203 0.89 # 15668 # 16351 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_16 - 327 Hydantoinase_A PF01968.13 290 1.4e-08 25.5 1.4 1 2 7.8e-07 2.7e-05 14.7 0.1 72 97 164 189 152 199 0.82 # 12552 # 13532 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_16 - 327 Hydantoinase_A PF01968.13 290 1.4e-08 25.5 1.4 2 2 3.2e-05 0.0011 9.4 0.1 209 265 247 303 201 323 0.78 # 12552 # 13532 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_33 - 744 AAA_16 PF13191.1 185 4.8e-05 14.8 0.0 1 1 5.1e-06 0.00017 13.0 0.0 22 56 183 218 179 317 0.82 # 27416 # 29647 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_33 - 744 Arch_ATPase PF01637.13 234 0.00016 12.7 0.0 1 1 1e-05 0.00035 11.7 0.0 27 78 192 237 184 274 0.79 # 27416 # 29647 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_33 - 744 TrwB_AAD_bind PF10412.4 386 1.2e-150 492.7 0.0 1 1 4.4e-152 1.5e-150 492.4 0.0 2 386 172 562 171 562 0.99 # 27416 # 29647 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_16 - 327 MutL PF13941.1 457 5.8e-05 12.8 0.0 1 1 2.7e-06 9.1e-05 12.2 0.0 231 281 151 202 130 286 0.64 # 12552 # 13532 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_19 - 228 Methyltransf_15 PF09445.5 164 6.3e-05 13.9 0.0 1 2 0.0079 0.27 2.2 0.0 53 80 4 30 2 34 0.92 # 15668 # 16351 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_19 - 228 Methyltransf_15 PF09445.5 164 6.3e-05 13.9 0.0 2 2 4.3e-05 0.0015 9.5 0.0 3 31 166 194 164 208 0.86 # 15668 # 16351 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_34 - 1569 UvrD_C_2 PF13538.1 104 2.6e-09 28.6 0.1 1 1 3.1e-10 1.1e-08 26.6 0.1 3 103 1344 1449 1342 1450 0.76 # 29647 # 34353 # 1 # ID=1_34;partial=01;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_6 - 87 Rad60-SLD PF11976.3 72 3.6e-05 14.8 0.1 1 1 1.5e-06 5.2e-05 14.3 0.1 12 39 41 68 33 77 0.83 # 3905 # 4165 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.418 1_16 - 327 StbA PF06406.6 318 1e-151 495.6 0.1 1 1 3.3e-153 1.1e-151 495.5 0.1 1 318 1 324 1 324 0.98 # 12552 # 13532 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_33 - 744 AAA_17 PF13207.1 121 0.00017 13.8 0.1 1 1 3.3e-05 0.0011 11.2 0.0 5 62 191 242 189 267 0.61 # 27416 # 29647 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_16 - 327 Hydant_A_N PF05378.8 176 0.0009 10.1 4.1 1 2 0.013 0.45 1.4 0.5 94 126 114 146 2 155 0.65 # 12552 # 13532 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_16 - 327 Hydant_A_N PF05378.8 176 0.0009 10.1 4.1 2 2 6.3e-05 0.0021 8.9 0.2 2 48 172 216 171 227 0.81 # 12552 # 13532 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_9 - 150 CENP-B_N PF04218.8 53 0.00017 12.5 0.1 1 1 2e-05 0.00067 10.5 0.1 11 36 113 145 111 147 0.76 # 7480 # 7929 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.378 1_33 - 744 T4SS-DNA_transf PF02534.9 469 5.4e-13 39.6 0.0 1 1 3.7e-13 1.3e-11 35.1 0.0 142 395 273 510 249 556 0.73 # 27416 # 29647 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_33 - 744 AAA_10 PF12846.2 304 9.2e-15 46.1 0.1 1 1 1.2e-14 4e-13 40.8 0.1 3 299 187 498 186 501 0.79 # 27416 # 29647 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_19 - 228 Methyltransf_11 PF08241.7 95 5.9e-05 15.0 0.1 1 3 0.061 2.1 0.4 0.0 55 65 15 25 2 28 0.73 # 15668 # 16351 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_19 - 228 Methyltransf_11 PF08241.7 95 5.9e-05 15.0 0.1 2 3 0.0023 0.08 4.9 0.0 78 93 53 68 46 70 0.85 # 15668 # 16351 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_19 - 228 Methyltransf_11 PF08241.7 95 5.9e-05 15.0 0.1 3 3 0.0014 0.047 5.7 0.0 5 54 172 220 168 226 0.82 # 15668 # 16351 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_34 - 1569 AAA_11 PF13086.1 236 8e-05 13.6 0.3 1 1 9e-06 0.00031 11.7 0.0 2 73 971 1039 970 1058 0.83 # 29647 # 34353 # 1 # ID=1_34;partial=01;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_33 - 744 GTP_EFTU PF00009.22 188 1.5e-05 15.9 0.0 1 2 4.1e-05 0.0014 9.5 0.0 2 28 184 210 183 232 0.90 # 27416 # 29647 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_33 - 744 GTP_EFTU PF00009.22 188 1.5e-05 15.9 0.0 2 2 0.002 0.068 3.9 0.0 51 85 335 367 316 375 0.89 # 27416 # 29647 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/cb86675c-4b62-4ac6-812a-eb189f3102b2 # Target file: checkm_output/bins/pn29/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn29/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/cb86675c-4b62-4ac6-812a-eb189f3102b2 checkm_output/bins/pn29/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:22:45 2017 # [ok]