# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 134 HTH_IclR PF09339.5 52 1.7e-06 16.3 0.4 1 1 6.9e-07 3.4e-06 15.4 0.4 19 40 4 25 1 26 0.90 # 2858 # 3259 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.460 1_1 - 175 MarR PF01047.17 59 1.7e-06 16.4 0.1 1 1 1.9e-06 9.7e-06 14.0 0.0 18 50 20 52 14 61 0.91 # 564 # 1088 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.411 1_1 - 175 Fe_dep_repress PF01325.14 60 2.1e-07 19.6 0.0 1 1 9e-08 4.5e-07 18.5 0.0 21 53 18 50 12 55 0.88 # 564 # 1088 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.411 1_5 - 134 MerR_1 PF13411.1 69 2.4e-05 12.8 0.2 1 1 1.5e-05 7.7e-05 11.2 0.0 2 30 5 33 4 48 0.87 # 2858 # 3259 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.460 1_5 - 134 HTH_23 PF13384.1 50 5.6e-06 14.7 0.1 1 1 2.6e-06 1.3e-05 13.6 0.1 18 40 4 26 1 26 0.91 # 2858 # 3259 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.460 1_1 - 175 Rho_N PF07498.7 43 1.4e-06 16.8 0.1 1 3 0.027 0.13 0.9 0.0 5 15 100 110 99 113 0.90 # 564 # 1088 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.411 1_1 - 175 Rho_N PF07498.7 43 1.4e-06 16.8 0.1 2 3 0.0061 0.031 2.9 0.0 4 16 121 133 120 135 0.86 # 564 # 1088 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.411 1_1 - 175 Rho_N PF07498.7 43 1.4e-06 16.8 0.1 3 3 8.9e-05 0.00044 8.8 0.0 1 15 149 163 149 164 0.93 # 564 # 1088 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.411 1_5 - 134 HTH_28 PF13518.1 52 1.8e-05 13.5 0.1 1 1 1.1e-05 5.7e-05 11.9 0.1 13 35 4 26 2 28 0.92 # 2858 # 3259 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.460 1_5 - 134 HTH_24 PF13412.1 48 3.2e-05 12.0 0.3 1 1 1.3e-05 6.4e-05 11.1 0.3 16 39 2 25 2 26 0.94 # 2858 # 3259 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.460 1_1 - 175 HTH_36 PF13730.1 55 1.8e-11 32.8 0.0 1 1 1.8e-11 9.2e-11 30.5 0.0 9 54 2 48 1 49 0.96 # 564 # 1088 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.411 1_5 - 134 MerR PF00376.18 38 1.1e-05 13.7 0.0 1 1 4.9e-06 2.5e-05 12.6 0.0 1 23 5 27 5 34 0.92 # 2858 # 3259 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.460 1_5 - 134 HTH_17 PF12728.2 51 4.1e-09 25.4 0.0 1 1 1.4e-09 6.9e-09 24.7 0.0 3 45 5 48 4 52 0.80 # 2858 # 3259 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.460 1_1 - 175 HTH_11 PF08279.7 55 1.5e-05 13.4 0.1 1 1 8.6e-06 4.3e-05 11.9 0.0 17 44 21 51 12 59 0.86 # 564 # 1088 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.411 1_1 - 175 MarR_2 PF12802.2 62 8.1e-07 17.4 0.1 1 2 7.4e-07 3.7e-06 15.3 0.0 20 54 17 52 5 61 0.79 # 564 # 1088 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.411 1_1 - 175 MarR_2 PF12802.2 62 8.1e-07 17.4 0.1 2 2 0.081 0.41 -0.8 0.1 30 46 112 128 75 134 0.65 # 564 # 1088 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.411 1_1 - 175 RuvB_C PF05491.8 76 3.6e-05 12.1 0.0 1 1 1.3e-05 6.5e-05 11.3 0.0 21 73 13 66 4 68 0.85 # 564 # 1088 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.411 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/295b448a-b9c7-4828-9a19-99b0903ea88e # Target file: checkm_output/bins/pn25/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn25/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/295b448a-b9c7-4828-9a19-99b0903ea88e checkm_output/bins/pn25/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:22:40 2017 # [ok]