# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 134 HTH_IclR PF09339.5 52 1.8e-06 16.2 0.4 1 1 6.9e-07 3.4e-06 15.4 0.4 19 40 4 25 1 26 0.90 # 3476 # 3877 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 1_3 - 475 AAA_23 PF13476.1 202 0.0016 7.4 21.5 1 1 0.0017 0.0084 5.1 21.4 2 144 3 182 2 428 0.62 # 1189 # 2613 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_3 - 475 SMC_N PF02463.14 220 4.9e-06 14.5 4.9 1 2 0.0033 0.017 3.0 0.1 23 42 18 37 4 55 0.83 # 1189 # 2613 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_3 - 475 SMC_N PF02463.14 220 4.9e-06 14.5 4.9 2 2 3.5e-06 1.7e-05 12.7 1.4 72 212 119 402 97 409 0.78 # 1189 # 2613 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_3 - 475 AAA_21 PF13304.1 303 1.2e-20 63.2 22.8 1 1 3.4e-20 1.7e-19 59.4 22.8 1 302 21 392 21 393 0.77 # 1189 # 2613 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_4 - 134 MerR_1 PF13411.1 69 2.4e-05 12.9 0.1 1 1 1.7e-05 8.3e-05 11.1 0.0 2 30 5 33 4 42 0.86 # 3476 # 3877 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 1_3 - 475 AAA_22 PF13401.1 131 8.2e-06 14.7 0.0 1 2 0.00047 0.0024 6.8 0.0 3 20 18 35 16 95 0.87 # 1189 # 2613 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_3 - 475 AAA_22 PF13401.1 131 8.2e-06 14.7 0.0 2 2 0.0013 0.0067 5.3 0.0 80 121 341 384 279 393 0.71 # 1189 # 2613 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_4 - 134 HTH_23 PF13384.1 50 5.6e-06 14.7 0.1 1 1 2.6e-06 1.3e-05 13.6 0.1 18 40 4 26 1 26 0.91 # 3476 # 3877 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 1_3 - 475 Arch_ATPase PF01637.13 234 1.6e-05 13.3 4.4 1 1 1.5e-05 7.7e-05 11.1 4.3 18 44 17 43 6 262 0.79 # 1189 # 2613 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_3 - 475 PhoH PF02562.11 205 4.7e-06 14.6 0.1 1 2 2.6e-05 0.00013 9.9 0.0 15 52 15 54 10 91 0.82 # 1189 # 2613 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_3 - 475 PhoH PF02562.11 205 4.7e-06 14.6 0.1 2 2 0.0088 0.044 1.6 0.0 119 158 347 391 339 417 0.72 # 1189 # 2613 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_4 - 134 HTH_28 PF13518.1 52 1.7e-05 13.5 0.1 1 1 1.1e-05 5.7e-05 11.9 0.1 13 35 4 26 2 28 0.92 # 3476 # 3877 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 1_4 - 134 HTH_24 PF13412.1 48 3.3e-05 12.0 0.3 1 1 1.3e-05 6.4e-05 11.1 0.3 16 39 2 25 2 26 0.94 # 3476 # 3877 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 1_3 - 475 TIGR02211 TIGR02211 221 9.6e-06 13.6 0.0 1 1 4.5e-06 2.2e-05 12.4 0.0 154 212 342 399 339 408 0.87 # 1189 # 2613 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_3 - 475 AAA_15 PF13175.1 415 2.4e-11 31.9 15.7 1 3 0.0035 0.017 2.7 0.7 13 36 12 33 2 36 0.67 # 1189 # 2613 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_3 - 475 AAA_15 PF13175.1 415 2.4e-11 31.9 15.7 2 3 0.035 0.17 -0.6 7.5 239 321 69 158 34 164 0.64 # 1189 # 2613 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_3 - 475 AAA_15 PF13175.1 415 2.4e-11 31.9 15.7 3 3 4.8e-12 2.4e-11 31.9 15.7 207 415 157 392 140 392 0.72 # 1189 # 2613 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_3 - 475 AAA_14 PF13173.1 128 6.8e-08 21.2 1.3 1 3 1.8e-05 9e-05 11.1 0.0 2 24 19 41 18 99 0.86 # 1189 # 2613 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_3 - 475 AAA_14 PF13173.1 128 6.8e-08 21.2 1.3 2 3 0.065 0.33 -0.4 0.0 50 70 223 242 179 289 0.54 # 1189 # 2613 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_3 - 475 AAA_14 PF13173.1 128 6.8e-08 21.2 1.3 3 3 0.0004 0.002 6.8 0.1 29 102 306 392 271 414 0.64 # 1189 # 2613 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 1_4 - 134 MerR PF00376.18 38 1e-05 13.8 0.0 1 1 4.9e-06 2.5e-05 12.6 0.0 1 23 5 27 5 34 0.92 # 3476 # 3877 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 1_4 - 134 HTH_17 PF12728.2 51 4.5e-09 25.3 0.0 1 1 1.6e-09 7.8e-09 24.5 0.0 3 44 5 47 4 50 0.79 # 3476 # 3877 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/4d6f8fcb-82eb-4322-934e-9c187ea8f71a # Target file: checkm_output/bins/pn24/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn24/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4d6f8fcb-82eb-4322-934e-9c187ea8f71a checkm_output/bins/pn24/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:22:39 2017 # [ok]