# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 159 HTH_DeoR PF08220.7 57 4.1e-07 17.0 0.0 1 1 4.9e-07 9.8e-07 15.8 0.0 20 47 80 107 76 108 0.94 # 477 # 953 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 159 HTH_38 PF13936.1 44 2.3e-06 14.6 0.0 1 1 2.7e-06 5.4e-06 13.4 0.0 24 41 78 95 76 96 0.87 # 477 # 953 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 159 MarR PF01047.17 59 2.4e-08 21.1 0.0 1 1 3.2e-08 6.4e-08 19.7 0.0 19 49 76 106 71 109 0.92 # 477 # 953 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 159 HTH_Tnp_4 PF13613.1 53 7e-06 13.0 0.0 1 1 6.2e-06 1.2e-05 12.3 0.0 22 44 77 99 76 101 0.91 # 477 # 953 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 159 HTH_32 PF13565.1 77 1.7e-05 13.1 0.2 1 1 0.00024 0.00048 8.4 0.2 33 77 37 95 7 95 0.64 # 477 # 953 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 159 GntR PF00392.16 64 1.4e-07 18.4 0.0 1 1 1.2e-07 2.5e-07 17.6 0.0 27 58 77 108 68 113 0.89 # 477 # 953 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 159 HTH_3 PF01381.17 55 5.5e-08 20.1 0.1 1 1 8.7e-08 1.7e-07 18.5 0.0 12 31 77 96 76 102 0.91 # 477 # 953 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 159 HTH_23 PF13384.1 50 2.4e-07 17.8 0.0 1 1 3.1e-07 6.3e-07 16.5 0.0 24 39 81 96 80 104 0.89 # 477 # 953 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 159 HTH_7 PF02796.10 45 6.1e-07 16.8 0.0 1 2 0.00048 0.00096 6.5 0.0 6 26 35 55 24 56 0.88 # 477 # 953 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 159 HTH_7 PF02796.10 45 6.1e-07 16.8 0.0 2 2 0.00021 0.00041 7.7 0.0 27 43 80 96 78 97 0.87 # 477 # 953 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 159 RepL PF05732.6 165 5.4e-07 16.3 0.0 1 1 3.6e-07 7.2e-07 15.9 0.0 54 129 52 132 3 143 0.79 # 477 # 953 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 159 HTH_19 PF12844.2 64 1.1e-05 12.9 1.0 1 1 1.8e-05 3.6e-05 11.3 0.0 18 34 80 96 76 99 0.94 # 477 # 953 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 159 HTH_28 PF13518.1 52 4.1e-08 20.7 0.0 1 1 4.4e-08 8.7e-08 19.6 0.0 18 44 80 104 74 112 0.79 # 477 # 953 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 159 HTH_36 PF13730.1 55 5.7e-10 26.7 0.3 1 1 6.6e-10 1.3e-09 25.6 0.0 6 53 54 102 52 104 0.92 # 477 # 953 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 159 HTH_Tnp_ISL3 PF13542.1 52 1.3e-05 11.8 0.0 1 2 0.0073 0.015 2.1 0.0 1 14 21 34 21 35 0.85 # 477 # 953 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 159 HTH_Tnp_ISL3 PF13542.1 52 1.3e-05 11.8 0.0 2 2 0.00029 0.00059 6.5 0.0 32 49 79 96 69 98 0.87 # 477 # 953 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 159 MerR PF00376.18 38 1.5e-05 12.0 0.0 1 1 2.8e-05 5.6e-05 10.2 0.0 5 19 80 94 77 108 0.94 # 477 # 953 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 159 HTH_17 PF12728.2 51 5.5e-07 17.3 0.0 1 1 6.8e-07 1.4e-06 16.0 0.0 7 23 80 96 77 113 0.80 # 477 # 953 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 159 HTH_11 PF08279.7 55 5.1e-09 23.2 0.1 1 1 7.6e-09 1.5e-08 21.7 0.0 19 44 78 105 76 112 0.84 # 477 # 953 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 159 HTH_5 PF01022.15 47 1.9e-05 11.8 0.0 1 2 0.095 0.19 -1.0 0.0 13 28 4 19 1 25 0.73 # 477 # 953 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 159 HTH_5 PF01022.15 47 1.9e-05 11.8 0.0 2 2 4.6e-05 9.2e-05 9.6 0.0 21 40 80 99 80 102 0.91 # 477 # 953 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 159 TrmB PF01978.14 68 4.3e-06 13.9 0.0 1 1 5e-06 1e-05 12.7 0.0 28 57 80 109 74 121 0.83 # 477 # 953 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 159 HTH_Crp_2 PF13545.1 76 9.1e-08 19.3 0.0 1 1 8.8e-08 1.8e-07 18.4 0.0 29 58 75 104 57 108 0.85 # 477 # 953 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/729c895c-e41e-4aab-8527-df5fcb95a32a # Target file: checkm_output/bins/pn197/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn197/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/729c895c-e41e-4aab-8527-df5fcb95a32a checkm_output/bins/pn197/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:22:24 2017 # [ok]