# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_28 - 323 KaiC PF06745.8 227 0.00021 13.4 0.1 1 1 4.3e-06 0.00046 12.3 0.1 12 43 33 63 27 149 0.80 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_30 - 187 HTH_IclR PF09339.5 52 1.4e-05 17.6 0.0 1 1 1.2e-06 4.1e-05 16.2 0.0 18 40 158 180 144 181 0.92 # 23418 # 23978 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.561 1_93 - 71 HTH_IclR PF09339.5 52 9.7e-05 15.0 0.0 1 1 3.3e-06 0.00012 14.7 0.0 18 50 19 56 6 58 0.82 # 80145 # 80357 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.563 1_27 - 346 HTH_IclR PF09339.5 52 0.00011 14.8 2.7 1 2 0.00036 0.013 8.2 0.0 16 37 38 59 27 68 0.84 # 19586 # 20623 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_27 - 346 HTH_IclR PF09339.5 52 0.00011 14.8 2.7 2 2 0.0034 0.12 5.1 0.5 30 40 127 137 125 138 0.90 # 19586 # 20623 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_93 - 71 HrcA_DNA-bdg PF03444.10 79 9.9e-06 18.0 0.0 1 1 1e-07 1.1e-05 17.9 0.0 8 61 8 62 1 65 0.80 # 80145 # 80357 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.563 1_28 - 323 ABC_tran PF00005.22 137 7.5e-06 19.3 0.1 1 1 2.7e-07 1.5e-05 18.4 0.1 2 90 31 120 30 159 0.75 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 748 ABC_tran PF00005.22 137 0.00011 15.5 0.0 1 1 5.5e-06 0.00029 14.1 0.0 4 37 38 71 36 197 0.85 # 1024 # 3267 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.506 1_30 - 187 HTH_22 PF13309.1 64 1.5e-05 17.8 0.1 1 1 4.5e-06 0.00024 13.9 0.0 45 63 161 179 158 180 0.87 # 23418 # 23978 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.561 1_25 - 298 HTH_22 PF13309.1 64 0.00084 12.1 0.2 1 2 0.0045 0.24 4.3 0.0 24 48 6 30 4 33 0.91 # 18085 # 18978 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 1_25 - 298 HTH_22 PF13309.1 64 0.00084 12.1 0.2 2 2 0.003 0.16 4.8 0.1 1 33 104 136 104 140 0.92 # 18085 # 18978 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 1_55 - 79 DUF463 PF04317.7 443 3.2e-05 15.6 0.0 1 1 3.5e-07 3.7e-05 15.4 0.0 2 30 46 74 45 78 0.89 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_40 - 425 Cdd1 PF11731.3 93 0.00035 13.5 0.0 1 1 8.1e-06 0.00085 12.3 0.0 10 47 178 215 141 227 0.85 # 32738 # 34012 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_29 - 555 rve_3 PF13683.1 67 0.00023 13.7 1.3 1 1 7.8e-06 0.00082 11.9 1.3 12 58 282 331 278 339 0.84 # 21770 # 23434 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_60 - 883 FtsK_SpoIIIE PF01580.13 205 2e-05 17.1 0.1 1 2 2e-06 0.00022 13.7 0.0 39 63 476 504 463 507 0.84 # 47337 # 49985 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.572 1_60 - 883 FtsK_SpoIIIE PF01580.13 205 2e-05 17.1 0.1 2 2 0.021 2.2 0.6 0.0 75 166 530 625 529 633 0.79 # 47337 # 49985 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.572 1_27 - 346 HTH_38 PF13936.1 44 4.6e-07 22.4 0.8 1 1 5.7e-08 3e-06 19.7 0.0 10 41 30 61 26 62 0.89 # 19586 # 20623 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_30 - 187 HTH_38 PF13936.1 44 8.7e-05 15.1 0.1 1 1 6.3e-06 0.00033 13.2 0.0 13 41 150 179 147 181 0.88 # 23418 # 23978 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.561 1_28 - 323 MobB PF03205.9 140 0.00034 13.3 0.1 1 1 3.4e-05 0.0012 11.6 0.0 2 31 42 70 41 86 0.78 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_55 - 79 MobB PF03205.9 140 0.00053 12.7 0.1 1 1 2.1e-05 0.00074 12.2 0.1 4 32 48 76 46 78 0.90 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_60 - 883 MobB PF03205.9 140 0.00085 12.0 0.1 1 1 8.1e-05 0.0029 10.3 0.0 4 37 483 515 481 523 0.79 # 47337 # 49985 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.572 1_29 - 555 HTH_Tnp_4 PF13613.1 53 0.00035 13.1 0.4 1 1 1.1e-05 0.0012 11.4 0.0 26 44 38 56 35 57 0.90 # 21770 # 23434 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_33 - 372 DUF3584 PF12128.3 1201 0.046 3.9 61.1 1 1 0.0042 0.44 0.6 61.0 261 533 79 352 68 366 0.56 # 26326 # 27441 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_30 - 187 HTH_8 PF02954.14 42 0.00024 13.7 0.1 1 1 5.9e-06 0.00062 12.3 0.1 24 42 164 182 161 182 0.89 # 23418 # 23978 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.561 1_30 - 187 TetR_N PF00440.18 47 0.00047 12.8 0.9 1 2 0.027 2.9 0.7 0.0 11 21 3 13 1 13 0.83 # 23418 # 23978 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.561 1_30 - 187 TetR_N PF00440.18 47 0.00047 12.8 0.9 2 2 3.7e-05 0.004 9.9 0.2 16 35 158 177 149 178 0.88 # 23418 # 23978 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.561 1_80 - 1752 AAA_19 PF13245.1 76 1.1e-07 24.5 1.8 1 1 7.5e-09 2.7e-07 23.3 0.3 7 76 980 1046 973 1046 0.78 # 66488 # 71743 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 1_55 - 79 AAA_19 PF13245.1 76 1.2e-05 18.0 0.0 1 1 4.6e-07 1.6e-05 17.6 0.0 14 42 48 75 41 78 0.80 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_28 - 323 AAA_19 PF13245.1 76 6.8e-05 15.6 0.2 1 1 9.8e-06 0.00035 13.3 0.1 6 37 36 67 32 119 0.75 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_38 - 402 CbiA PF01656.18 195 2.4e-18 59.2 0.0 1 1 4.6e-20 4.9e-18 58.2 0.0 1 141 111 291 111 328 0.75 # 30477 # 31682 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_28 - 323 PRK PF00485.13 194 0.00036 13.1 0.0 1 1 7e-06 0.00074 12.1 0.0 1 38 42 81 42 132 0.66 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_55 - 79 KTI12 PF08433.5 270 0.00067 11.9 0.1 1 1 9.5e-06 0.001 11.3 0.1 6 30 49 73 47 77 0.86 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_39 - 325 Sigma70_r4_2 PF08281.7 54 0.00055 12.4 0.0 1 1 1.6e-05 0.0017 10.8 0.0 24 50 158 184 153 185 0.89 # 31682 # 32656 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_102 - 330 Rep_3 PF01051.16 222 8.9e-33 106.7 0.2 1 1 1.2e-34 1.3e-32 106.1 0.2 3 214 14 269 13 275 0.91 # 89527 # 90516 # -1 # ID=1_102;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_29 - 555 rve PF00665.21 120 1.4e-12 40.8 0.0 1 1 7.2e-14 3.8e-12 39.4 0.0 2 118 157 298 156 300 0.89 # 21770 # 23434 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_27 - 346 rve PF00665.21 120 2.7e-10 33.4 0.0 1 1 1.3e-11 6.7e-10 32.2 0.0 18 118 206 305 190 307 0.91 # 19586 # 20623 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_27 - 346 Terminase_5 PF06056.7 58 0.00016 14.2 0.0 1 1 6.1e-06 0.00065 12.3 0.0 3 35 30 62 28 85 0.86 # 19586 # 20623 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_55 - 79 Zeta_toxin PF06414.7 201 0.00077 11.6 0.0 1 1 8e-06 0.00085 11.4 0.0 21 41 49 69 31 75 0.82 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_80 - 1752 AAA_30 PF13604.1 196 3.5e-46 150.2 12.7 1 3 0.067 2.4 0.7 0.0 41 86 223 269 218 281 0.84 # 66488 # 71743 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 1_80 - 1752 AAA_30 PF13604.1 196 3.5e-46 150.2 12.7 2 3 5e-06 0.00018 14.1 1.9 8 144 420 548 418 559 0.81 # 66488 # 71743 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 1_80 - 1752 AAA_30 PF13604.1 196 3.5e-46 150.2 12.7 3 3 2.2e-44 7.9e-43 139.3 1.3 1 191 967 1160 967 1163 0.94 # 66488 # 71743 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 1_28 - 323 AAA_30 PF13604.1 196 0.00017 14.2 0.3 1 1 1.5e-05 0.00052 12.6 0.3 15 128 38 164 27 170 0.55 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_55 - 79 AAA_30 PF13604.1 196 0.0011 11.5 0.0 1 1 4.1e-05 0.0015 11.1 0.0 22 45 48 72 38 76 0.74 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_104 - 163 DUF106 PF01956.11 168 0.0045 9.5 3.4 1 2 0.049 5.2 -0.5 0.0 17 51 12 44 2 65 0.50 # 91790 # 92278 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.458 1_104 - 163 DUF106 PF01956.11 168 0.0045 9.5 3.4 2 2 4.9e-05 0.0051 9.3 2.0 43 81 64 102 52 130 0.90 # 91790 # 92278 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.458 1_39 - 325 CPSase_L_D3 PF02787.14 123 0.00035 13.3 0.5 1 1 1.1e-05 0.0011 11.7 0.1 50 98 135 186 128 191 0.79 # 31682 # 32656 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_92 - 112 GerE PF00196.14 58 5.3e-13 41.2 0.0 1 1 7.1e-15 7.5e-13 40.7 0.0 4 54 32 82 30 85 0.96 # 79825 # 80160 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_77 - 736 TraG-D_C PF12696.2 128 8.9e-21 67.1 0.0 1 2 0.099 10 -1.0 0.0 12 60 196 243 193 247 0.85 # 63565 # 65772 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_77 - 736 TraG-D_C PF12696.2 128 8.9e-21 67.1 0.0 2 2 4.3e-22 4.6e-20 64.8 0.0 1 127 419 541 419 542 0.87 # 63565 # 65772 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_27 - 346 DDE_3 PF13358.1 146 1.4e-28 92.4 0.0 1 1 2.6e-30 2.7e-28 91.5 0.0 2 138 177 310 176 317 0.96 # 19586 # 20623 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_38 - 402 MipZ PF09140.6 261 6e-06 18.4 0.0 1 2 0.0025 0.27 3.2 0.0 3 50 111 163 109 201 0.73 # 30477 # 31682 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_38 - 402 MipZ PF09140.6 261 6e-06 18.4 0.0 2 2 2.8e-06 0.0003 12.9 0.0 87 136 233 282 220 305 0.87 # 30477 # 31682 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_53 - 466 DivIC PF04977.10 80 0.0026 10.3 6.6 1 2 1.6e-05 0.0017 10.9 3.5 17 66 75 123 71 124 0.91 # 43443 # 44840 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_53 - 466 DivIC PF04977.10 80 0.0026 10.3 6.6 2 2 0.054 5.7 -0.4 0.1 49 64 406 421 401 426 0.81 # 43443 # 44840 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_57 - 74 zf-dskA_traR PF01258.12 36 2.7e-15 48.9 2.2 1 1 3.5e-17 3.7e-15 48.4 2.2 5 35 36 66 29 72 0.86 # 46260 # 46481 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_33 - 372 DUF2316 PF10078.4 89 0.013 8.6 9.2 1 2 0.00014 0.015 8.4 2.5 5 45 198 238 193 249 0.88 # 26326 # 27441 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_33 - 372 DUF2316 PF10078.4 89 0.013 8.6 9.2 2 2 0.0082 0.87 2.7 0.6 5 42 251 288 247 301 0.86 # 26326 # 27441 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_28 - 323 AAA PF00004.24 132 1.6e-06 21.3 0.0 1 1 3.5e-08 3.8e-06 20.2 0.0 3 97 45 152 43 181 0.68 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_39 - 325 HTH_37 PF13744.1 80 0.00012 14.8 1.3 1 2 0.0091 0.96 2.4 0.1 27 55 9 37 6 43 0.82 # 31682 # 32656 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_39 - 325 HTH_37 PF13744.1 80 0.00012 14.8 1.3 2 2 3.8e-05 0.004 10.0 0.1 27 53 156 182 153 186 0.90 # 31682 # 32656 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_93 - 71 Rrf2 PF02082.15 83 0.00019 14.6 0.0 1 1 1.8e-06 0.00019 14.5 0.0 11 58 7 57 2 70 0.76 # 80145 # 80357 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.563 1_28 - 323 TIGR00064 TIGR00064 279 7.5e-05 14.7 0.2 1 1 1.4e-06 0.00015 13.7 0.0 72 111 33 72 4 76 0.73 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_55 - 79 cobW PF02492.14 178 2.5e-05 16.7 0.1 1 1 2.9e-07 3.1e-05 16.5 0.1 4 25 48 73 45 78 0.78 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_28 - 323 AAA_16 PF13191.1 185 3.8e-11 36.3 1.2 1 1 1.4e-11 4.8e-10 32.7 0.3 22 179 38 153 24 162 0.76 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_55 - 79 AAA_16 PF13191.1 185 5.8e-05 16.1 0.0 1 1 1.9e-06 6.8e-05 15.9 0.0 28 51 48 71 39 78 0.88 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_77 - 736 AAA_16 PF13191.1 185 0.00019 14.4 0.0 1 1 1.9e-05 0.00069 12.6 0.0 21 55 182 216 179 247 0.85 # 63565 # 65772 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_28 - 323 AAA_22 PF13401.1 131 5.3e-16 52.0 0.3 1 1 3.4e-17 1.2e-15 50.8 0.3 3 129 39 170 36 172 0.77 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 748 AAA_22 PF13401.1 131 5.3e-09 29.3 0.0 1 1 1.3e-08 4.4e-07 23.1 0.0 9 125 50 238 45 243 0.90 # 1024 # 3267 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.506 1_55 - 79 AAA_22 PF13401.1 131 0.00013 15.1 0.0 1 1 1.1e-05 0.00038 13.6 0.1 7 31 47 71 41 76 0.83 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_88 - 247 HTH_AraC PF00165.18 42 5.5e-17 54.1 3.8 1 2 8.8e-09 9.3e-07 21.6 0.0 4 39 154 188 151 191 0.87 # 77118 # 77858 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.475 1_88 - 247 HTH_AraC PF00165.18 42 5.5e-17 54.1 3.8 2 2 1.7e-12 1.8e-10 33.4 0.3 11 39 209 238 207 240 0.94 # 77118 # 77858 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.475 1_25 - 298 HTH_1 PF00126.22 60 4.1e-16 51.5 0.0 1 1 1.2e-17 1.2e-15 50.0 0.0 2 60 7 65 6 65 0.96 # 18085 # 18978 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 1_27 - 346 LZ_Tnp_IS481 PF13011.1 85 5e-06 19.8 0.2 1 1 1.1e-07 1.2e-05 18.6 0.2 12 69 27 82 15 89 0.91 # 19586 # 20623 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_57 - 74 Tnp_zf-ribbon_2 PF13842.1 32 0.00033 14.1 0.8 1 1 5.1e-06 0.00054 13.4 0.8 15 32 33 61 21 61 0.82 # 46260 # 46481 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_27 - 346 HTH_32 PF13565.1 77 3.9e-12 39.9 2.9 1 2 0.0032 0.17 5.8 0.0 32 77 24 61 8 61 0.81 # 19586 # 20623 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_27 - 346 HTH_32 PF13565.1 77 3.9e-12 39.9 2.9 2 2 2.9e-13 1.5e-11 38.0 0.3 1 77 56 136 56 136 0.82 # 19586 # 20623 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_29 - 555 HTH_32 PF13565.1 77 0.00012 15.9 8.9 1 3 0.0033 0.18 5.7 0.1 33 77 11 52 2 52 0.67 # 21770 # 23434 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_29 - 555 HTH_32 PF13565.1 77 0.00012 15.9 8.9 2 3 0.0011 0.06 7.2 0.1 21 63 61 113 54 120 0.69 # 21770 # 23434 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_29 - 555 HTH_32 PF13565.1 77 0.00012 15.9 8.9 3 3 0.0055 0.29 5.0 0.1 1 18 131 148 131 160 0.79 # 21770 # 23434 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_27 - 346 HTH_23 PF13384.1 50 1.9e-11 36.4 2.8 1 1 2e-12 4.2e-11 35.2 0.0 3 50 26 73 24 73 0.94 # 19586 # 20623 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_42 - 584 HTH_23 PF13384.1 50 9.8e-06 18.2 0.0 1 1 1.6e-06 3.4e-05 16.5 0.0 13 45 70 99 67 104 0.88 # 34705 # 36456 # 1 # ID=1_42;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.595 1_30 - 187 HTH_23 PF13384.1 50 1.3e-05 17.8 0.0 1 1 1.6e-06 3.3e-05 16.5 0.0 12 42 152 183 148 186 0.81 # 23418 # 23978 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.561 1_92 - 112 HTH_23 PF13384.1 50 0.00089 12.0 0.1 1 1 9.1e-05 0.0019 10.9 0.1 8 35 37 64 36 67 0.95 # 79825 # 80160 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_29 - 555 HTH_23 PF13384.1 50 0.0038 10.0 0.1 1 2 0.00018 0.0038 10.0 0.1 20 39 34 53 29 57 0.88 # 21770 # 23434 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_29 - 555 HTH_23 PF13384.1 50 0.0038 10.0 0.1 2 2 0.0029 0.061 6.1 0.5 32 42 130 140 128 147 0.84 # 21770 # 23434 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_30 - 187 HTH_7 PF02796.10 45 7.9e-10 31.5 0.1 1 1 4.8e-11 1.7e-09 30.4 0.1 1 42 140 179 140 181 0.93 # 23418 # 23978 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.561 1_29 - 555 HTH_7 PF02796.10 45 2.8e-05 16.9 0.2 1 1 3e-06 0.00011 15.1 0.2 23 43 33 53 30 54 0.93 # 21770 # 23434 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_27 - 346 HTH_7 PF02796.10 45 0.00026 13.9 0.2 1 2 0.00013 0.0047 9.8 0.0 14 38 33 57 21 61 0.76 # 19586 # 20623 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_27 - 346 HTH_7 PF02796.10 45 0.00026 13.9 0.2 2 2 0.066 2.3 1.2 0.1 35 43 129 137 119 139 0.79 # 19586 # 20623 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_2 - 748 NB-ARC PF00931.17 287 0.00015 13.7 0.0 1 1 1e-05 0.00054 11.8 0.0 6 111 31 207 28 221 0.85 # 1024 # 3267 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.506 1_28 - 323 NB-ARC PF00931.17 287 0.00042 12.2 0.3 1 1 1.2e-05 0.00063 11.6 0.3 8 104 29 126 22 144 0.74 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_93 - 71 FeoC PF09012.5 69 0.00038 13.2 0.0 1 1 4.4e-06 0.00047 12.9 0.0 14 52 24 62 5 66 0.85 # 80145 # 80357 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.563 1_27 - 346 HTH_29 PF13551.1 112 1.9e-18 59.7 0.1 1 1 1.4e-19 4.8e-18 58.4 0.1 1 111 30 139 30 140 0.92 # 19586 # 20623 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_29 - 555 HTH_29 PF13551.1 112 7.5e-06 19.1 0.5 1 2 3.4e-05 0.0012 12.0 0.1 14 91 33 109 25 121 0.65 # 21770 # 23434 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_29 - 555 HTH_29 PF13551.1 112 7.5e-06 19.1 0.5 2 2 0.011 0.39 3.9 0.0 25 44 128 147 125 155 0.80 # 21770 # 23434 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_30 - 187 HTH_29 PF13551.1 112 1.5e-05 18.2 1.2 1 2 0.067 2.4 1.4 0.1 32 62 120 149 104 156 0.71 # 23418 # 23978 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.561 1_30 - 187 HTH_29 PF13551.1 112 1.5e-05 18.2 1.2 2 2 5.5e-06 0.0002 14.5 0.0 10 38 157 184 152 185 0.90 # 23418 # 23978 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.561 1_93 - 71 Sigma70_r3 PF04539.11 78 0.00069 12.5 0.0 1 1 7.3e-06 0.00077 12.4 0.0 18 51 22 55 6 58 0.81 # 80145 # 80357 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.563 1_28 - 323 Arch_ATPase PF01637.13 234 3.9e-05 16.4 0.2 1 1 8.6e-07 9.1e-05 15.2 0.2 8 135 30 142 27 164 0.68 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_28 - 323 AAA_5 PF07728.9 139 8.5e-05 15.3 0.1 1 1 7e-06 0.00074 12.2 0.2 5 90 46 149 43 152 0.85 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_28 - 323 ResIII PF04851.10 184 1e-05 18.4 0.2 1 2 3.4e-05 0.0018 11.1 0.3 29 101 44 110 20 121 0.72 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_28 - 323 ResIII PF04851.10 184 1e-05 18.4 0.2 2 2 0.0012 0.061 6.1 0.0 131 162 109 140 96 153 0.63 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_55 - 79 ResIII PF04851.10 184 0.00024 14.0 0.0 1 1 5.2e-06 0.00028 13.7 0.0 6 51 13 70 9 76 0.83 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_77 - 736 TrwB_AAD_bind PF10412.4 386 1.8e-145 477.3 0.0 1 1 8.4e-147 2.2e-145 477.0 0.0 2 386 172 561 171 561 0.99 # 63565 # 65772 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_60 - 883 TrwB_AAD_bind PF10412.4 386 6.1e-07 21.3 0.2 1 1 9.4e-08 2.5e-06 19.3 0.0 15 53 479 517 470 551 0.81 # 47337 # 49985 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.572 1_28 - 323 TrwB_AAD_bind PF10412.4 386 0.00015 13.4 0.5 1 2 6.6e-05 0.0018 9.9 0.0 14 44 39 69 35 76 0.83 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_28 - 323 TrwB_AAD_bind PF10412.4 386 0.00015 13.4 0.5 2 2 0.085 2.2 -0.3 0.0 234 275 115 158 112 169 0.78 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_55 - 79 TrwB_AAD_bind PF10412.4 386 0.00024 12.8 0.0 1 1 1.7e-05 0.00045 11.8 0.0 12 44 41 73 33 76 0.84 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_55 - 79 AAA_18 PF13238.1 129 4.2e-05 16.9 0.7 1 2 0.021 1.1 2.6 0.0 50 92 9 46 2 49 0.73 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_55 - 79 AAA_18 PF13238.1 129 4.2e-05 16.9 0.7 2 2 9.5e-06 0.0005 13.4 0.3 3 22 49 68 48 77 0.80 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_28 - 323 AAA_18 PF13238.1 129 9.7e-05 15.7 0.0 1 1 3.3e-06 0.00018 14.8 0.0 1 23 43 90 43 138 0.67 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_40 - 425 IMS_HHH PF11798.3 32 3.5e-08 26.2 0.1 1 1 7.8e-10 8.3e-08 25.0 0.1 5 32 174 201 169 201 0.89 # 32738 # 34012 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_34 - 170 TIGR01406 TIGR01406 231 0.00035 12.9 0.0 1 1 5e-06 0.00053 12.3 0.0 3 59 106 156 105 159 0.81 # 27434 # 27943 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.592 1_60 - 883 DUF87 PF01935.12 229 1.4e-07 24.5 0.0 1 1 1e-08 5.5e-07 22.6 0.0 26 221 482 668 468 676 0.75 # 47337 # 49985 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.572 1_28 - 323 DUF87 PF01935.12 229 0.00063 12.6 0.2 1 1 0.0001 0.0055 9.5 0.0 26 52 43 69 40 73 0.85 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_27 - 346 HTH_28 PF13518.1 52 1e-09 31.3 0.1 1 1 2.1e-10 7.5e-09 28.5 0.0 1 50 29 79 29 82 0.91 # 19586 # 20623 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_30 - 187 HTH_28 PF13518.1 52 1.8e-06 20.9 1.1 1 1 7.1e-08 2.5e-06 20.4 0.1 4 38 149 184 148 185 0.92 # 23418 # 23978 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.561 1_29 - 555 HTH_28 PF13518.1 52 0.0019 11.2 0.0 1 2 5.4e-05 0.0019 11.2 0.0 15 35 34 54 32 64 0.90 # 21770 # 23434 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_29 - 555 HTH_28 PF13518.1 52 0.0019 11.2 0.0 2 2 0.037 1.3 2.2 0.4 26 37 129 140 125 145 0.87 # 21770 # 23434 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_28 - 323 TIGR00041 TIGR00041 196 0.00035 13.0 0.0 1 1 5.7e-06 0.00061 12.2 0.0 2 54 38 96 37 122 0.74 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_93 - 71 HTH_24 PF13412.1 48 1.9e-05 17.0 0.1 1 1 5.6e-07 2.9e-05 16.4 0.1 5 47 6 54 3 55 0.87 # 80145 # 80357 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.563 1_39 - 325 HTH_24 PF13412.1 48 2e-05 16.9 0.2 1 1 2.5e-06 0.00013 14.3 0.0 13 39 157 182 153 184 0.84 # 31682 # 32656 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_88 - 247 HTH_18 PF12833.2 81 9e-16 50.8 0.2 1 1 1.9e-17 2e-15 49.7 0.0 1 79 164 240 164 241 0.96 # 77118 # 77858 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.475 1_93 - 71 DUF2250 PF10007.4 93 8e-05 15.6 0.0 1 1 8e-07 8.5e-05 15.5 0.0 25 57 27 59 6 63 0.86 # 80145 # 80357 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.563 1_27 - 346 HTH_33 PF13592.1 60 1.5e-09 30.3 0.7 1 1 6.2e-11 6.6e-09 28.3 0.3 3 50 108 155 107 157 0.94 # 19586 # 20623 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_28 - 323 DUF2075 PF09848.4 352 1.9e-06 20.0 0.1 1 1 5.2e-08 2.7e-06 19.5 0.1 2 97 41 138 40 165 0.71 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_55 - 79 DUF2075 PF09848.4 352 8.3e-06 17.9 0.0 1 1 1.9e-07 1e-05 17.6 0.0 5 30 48 73 44 78 0.79 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_80 - 1752 UvrD_C_2 PF13538.1 104 1.5e-08 27.8 0.3 1 2 0.0055 0.58 3.4 0.0 6 45 1226 1265 1222 1293 0.76 # 66488 # 71743 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 1_80 - 1752 UvrD_C_2 PF13538.1 104 1.5e-08 27.8 0.3 2 2 1.6e-08 1.7e-06 21.1 0.1 3 102 1340 1443 1338 1445 0.79 # 66488 # 71743 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 1_17 - 117 HTH_OrfB_IS605 PF12323.3 46 8.7e-19 59.7 0.0 1 1 1.3e-20 1.4e-18 59.0 0.0 1 45 1 45 1 46 0.98 # 11972 # 12322 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.462 1_28 - 323 T2SE PF00437.15 272 2.8e-06 19.3 0.7 1 1 1.3e-07 1.4e-05 17.1 0.7 110 161 22 72 6 137 0.81 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_28 - 323 NACHT PF05729.7 166 0.00051 12.7 0.2 1 1 1.1e-05 0.0012 11.5 0.2 1 28 41 68 41 140 0.77 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_28 - 323 UPF0079 PF02367.12 123 0.00012 14.7 0.0 1 1 2.2e-06 0.00023 13.8 0.0 3 45 28 70 26 114 0.84 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_28 - 323 AAA_17 PF13207.1 121 0.00016 15.5 0.1 1 1 6.8e-06 0.00036 14.4 0.0 1 40 42 89 42 186 0.63 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_55 - 79 AAA_17 PF13207.1 121 0.001 12.9 0.3 1 1 4.5e-05 0.0024 11.7 0.2 4 23 49 68 46 76 0.86 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_28 - 323 TIGR02211 TIGR02211 221 0.00049 12.3 0.0 1 1 7.3e-06 0.00078 11.7 0.0 11 51 20 60 12 86 0.88 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_55 - 79 Viral_helicase1 PF01443.13 234 0.00024 13.7 0.1 1 1 3.4e-06 0.00036 13.1 0.1 3 29 49 73 47 77 0.84 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_55 - 79 Pox_A32 PF04665.7 241 0.00039 12.7 0.0 1 1 4.9e-06 0.00052 12.3 0.0 9 40 40 71 35 74 0.88 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_28 - 323 AAA_14 PF13173.1 128 4.3e-06 19.6 0.0 1 1 3.5e-07 1.8e-05 17.6 0.0 2 96 40 164 39 193 0.62 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_55 - 79 AAA_14 PF13173.1 128 0.00013 14.9 0.2 1 2 0.064 3.4 0.6 0.0 78 104 17 42 11 48 0.76 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_55 - 79 AAA_14 PF13173.1 128 0.00013 14.9 0.2 2 2 1.2e-05 0.00064 12.6 0.0 6 28 48 70 43 76 0.85 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_27 - 346 HTH_Tnp_ISL3 PF13542.1 52 0.00032 12.9 0.4 1 1 2.3e-05 0.0012 11.0 0.4 18 49 30 62 26 62 0.79 # 19586 # 20623 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_29 - 555 HTH_Tnp_ISL3 PF13542.1 52 0.00043 12.5 0.0 1 1 2.7e-05 0.0014 10.8 0.0 30 49 34 53 32 55 0.90 # 21770 # 23434 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_28 - 323 AAA_33 PF13671.1 143 0.00017 14.5 0.0 1 1 3.7e-06 0.00039 13.3 0.0 1 45 42 100 42 132 0.60 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_55 - 79 ArgK PF03308.11 267 5.4e-06 18.3 0.0 1 1 5.1e-08 5.4e-06 18.3 0.0 30 59 45 74 21 77 0.87 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_77 - 736 T4SS-DNA_transf PF02534.9 469 5.2e-12 38.0 0.0 1 1 2e-13 1e-11 37.0 0.0 276 391 394 505 363 542 0.81 # 63565 # 65772 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_60 - 883 T4SS-DNA_transf PF02534.9 469 0.00016 13.3 0.0 1 2 0.0015 0.079 4.4 0.0 105 185 533 607 470 622 0.86 # 47337 # 49985 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.572 1_60 - 883 T4SS-DNA_transf PF02534.9 469 0.00016 13.3 0.0 2 2 0.00033 0.017 6.6 0.0 321 378 713 769 665 771 0.93 # 47337 # 49985 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.572 1_93 - 71 HTH_15 PF12324.3 77 4.5e-05 16.1 0.0 1 2 4.6e-06 0.00049 12.8 0.0 34 65 20 51 16 56 0.90 # 80145 # 80357 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.563 1_93 - 71 HTH_15 PF12324.3 77 4.5e-05 16.1 0.0 2 2 0.014 1.5 1.6 0.0 13 28 54 69 52 70 0.87 # 80145 # 80357 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.563 1_55 - 79 RNA_helicase PF00910.17 107 0.00065 12.9 0.2 1 1 1.1e-05 0.0012 12.1 0.1 3 28 49 74 47 78 0.85 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_93 - 71 HTH_45 PF14947.1 77 4.6e-05 16.2 0.0 1 1 9e-07 9.5e-05 15.2 0.0 6 52 4 58 2 63 0.75 # 80145 # 80357 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.563 1_55 - 79 NTPase_1 PF03266.10 168 5.2e-05 16.0 0.1 1 1 7.8e-07 8.2e-05 15.3 0.1 2 27 47 72 46 76 0.87 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_27 - 346 DUF1836 PF08876.6 105 0.00051 12.8 0.0 1 1 1.4e-05 0.0015 11.4 0.0 47 89 13 55 10 64 0.86 # 19586 # 20623 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_33 - 372 TIGR00422 TIGR00422 863 0.022 5.3 17.2 1 1 0.00031 0.033 4.7 17.0 719 856 133 270 70 276 0.82 # 26326 # 27441 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_82 - 195 Glyco_trans_1_3 PF13528.1 318 8.6e-05 14.8 0.0 1 1 1.2e-06 0.00013 14.2 0.0 144 213 19 89 3 96 0.72 # 72537 # 73121 # 1 # ID=1_82;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.588 1_2 - 748 KAP_NTPase PF07693.9 325 1.4e-49 161.8 0.0 1 1 1.8e-51 1.9e-49 161.3 0.0 4 323 29 333 26 335 0.86 # 1024 # 3267 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.506 1_27 - 346 HTH_17 PF12728.2 51 0.00014 15.2 0.3 1 2 4.3e-05 0.0046 10.3 0.0 2 45 41 90 40 92 0.87 # 19586 # 20623 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_27 - 346 HTH_17 PF12728.2 51 0.00014 15.2 0.3 2 2 0.034 3.6 1.0 0.0 13 25 127 139 122 147 0.86 # 19586 # 20623 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_57 - 74 Zn-ribbon_8 PF09723.5 42 5.7e-05 16.1 0.6 1 1 1e-06 0.00011 15.2 0.6 6 39 35 67 34 69 0.78 # 46260 # 46481 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_101 - 129 BOF PF04076.8 103 7.1e-44 140.9 0.7 1 1 7.9e-46 8.4e-44 140.7 0.7 2 102 25 125 24 126 0.98 # 88600 # 88986 # 1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_28 - 323 PIF1 PF05970.9 364 3e-05 16.0 0.0 1 1 6.3e-07 6.7e-05 14.9 0.0 7 127 27 149 23 167 0.68 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_30 - 187 TrmB PF01978.14 68 9.6e-05 15.1 0.0 1 1 3.6e-06 0.00019 14.1 0.0 21 45 157 181 148 184 0.88 # 23418 # 23978 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.561 1_93 - 71 TrmB PF01978.14 68 0.00011 14.9 0.0 1 1 2.7e-06 0.00014 14.6 0.0 22 56 24 58 22 68 0.91 # 80145 # 80357 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.563 1_93 - 71 HTH_Crp_2 PF13545.1 76 0.0004 13.2 0.0 1 1 4.5e-06 0.00048 12.9 0.0 7 59 10 55 4 63 0.79 # 80145 # 80357 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.563 1_34 - 170 RNase_T PF00929.19 164 4.6e-07 23.2 0.0 1 1 6.3e-09 6.7e-07 22.7 0.0 1 55 106 152 106 158 0.89 # 27434 # 27943 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.592 1_60 - 883 AAA_10 PF12846.2 304 1.2e-49 162.4 0.0 1 1 7.7e-51 2e-49 161.6 0.0 1 294 479 768 479 774 0.88 # 47337 # 49985 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.572 1_77 - 736 AAA_10 PF12846.2 304 9.6e-07 21.4 0.0 1 1 1.4e-06 3.7e-05 16.2 0.0 4 295 188 493 186 498 0.52 # 63565 # 65772 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_28 - 323 AAA_10 PF12846.2 304 1.1e-06 21.3 0.1 1 2 1.7e-05 0.00044 12.7 0.0 3 34 42 73 40 106 0.73 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_28 - 323 AAA_10 PF12846.2 304 1.1e-06 21.3 0.1 2 2 0.0025 0.068 5.5 0.0 216 245 120 150 79 207 0.83 # 20812 # 21780 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_55 - 79 AAA_10 PF12846.2 304 0.00027 13.4 0.2 1 2 0.0027 0.071 5.4 0.0 272 286 15 33 4 37 0.76 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_55 - 79 AAA_10 PF12846.2 304 0.00027 13.4 0.2 2 2 0.0015 0.039 6.3 0.1 6 29 49 72 45 76 0.87 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_93 - 71 HTH_20 PF12840.2 61 9.6e-05 15.2 0.0 1 1 2e-06 0.00011 15.0 0.0 15 59 9 59 2 61 0.88 # 80145 # 80357 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.563 1_102 - 330 HTH_20 PF12840.2 61 0.00036 13.4 0.0 1 2 0.0057 0.3 4.0 0.0 24 46 106 128 101 129 0.89 # 89527 # 90516 # -1 # ID=1_102;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_102 - 330 HTH_20 PF12840.2 61 0.00036 13.4 0.0 2 2 0.00075 0.04 6.8 0.0 19 58 217 263 190 266 0.79 # 89527 # 90516 # -1 # ID=1_102;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_38 - 402 AAA_31 PF13614.1 157 0.00048 13.1 0.1 1 2 0.071 7.5 -0.6 0.0 12 61 120 174 110 209 0.55 # 30477 # 31682 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_38 - 402 AAA_31 PF13614.1 157 0.00048 13.1 0.1 2 2 3.1e-05 0.0033 10.3 0.0 108 147 235 273 231 279 0.86 # 30477 # 31682 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_93 - 71 FaeA PF04703.7 62 5.8e-31 99.5 0.0 1 1 6e-33 6.4e-31 99.4 0.0 1 61 1 70 1 70 0.99 # 80145 # 80357 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.563 1_40 - 425 DNA_pol_lambd_f PF10391.4 52 0.00033 13.2 0.0 1 1 1e-05 0.0011 11.5 0.0 5 29 183 207 179 218 0.85 # 32738 # 34012 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_80 - 1752 AAA_11 PF13086.1 236 0.0002 13.9 2.1 1 1 7.7e-06 0.00041 12.9 0.0 2 75 968 1038 967 1059 0.81 # 66488 # 71743 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.618 1_55 - 79 AAA_11 PF13086.1 236 0.00026 13.6 0.0 1 1 5e-06 0.00026 13.6 0.0 16 43 44 70 18 78 0.78 # 45377 # 45613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_37 - 314 Glyco_trans_4_3 PF12000.3 171 2.2e-06 20.3 0.1 1 2 0.00013 0.014 8.0 0.0 14 84 112 182 97 188 0.77 # 29121 # 30062 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 1_37 - 314 Glyco_trans_4_3 PF12000.3 171 2.2e-06 20.3 0.1 2 2 3.4e-05 0.0036 9.9 0.0 19 65 209 256 201 261 0.90 # 29121 # 30062 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/536f3a4c-f002-4068-8d04-a7fdd3fb203d # Target file: checkm_output/bins/pn191/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn191/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/536f3a4c-f002-4068-8d04-a7fdd3fb203d checkm_output/bins/pn191/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:22:23 2017 # [ok]