# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 284 RepC PF06504.6 283 6.3e-160 520.6 0.0 1 1 5e-161 6.9e-160 520.5 0.0 2 282 2 282 1 283 0.99 # 4458 # 5309 # 1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.661 1_12 - 143 TetR_N PF00440.18 47 2.1e-20 62.3 0.0 1 1 3e-21 4.2e-20 61.4 0.0 2 47 19 64 18 64 0.97 # 9040 # 9468 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_13 - 400 TIGR01394 TIGR01394 594 0.00021 9.3 0.0 1 1 2.2e-05 0.00031 8.8 0.0 408 486 267 343 261 354 0.84 # 9547 # 10746 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_12 - 143 HTH_23 PF13384.1 50 4.8e-05 13.2 0.2 1 2 2.1e-05 0.00029 10.7 0.0 10 35 22 51 14 65 0.74 # 9040 # 9468 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_12 - 143 HTH_23 PF13384.1 50 4.8e-05 13.2 0.2 2 2 0.047 0.65 0.1 0.1 9 20 97 108 96 110 0.84 # 9040 # 9468 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_12 - 143 HTH_Tnp_1_2 PF13022.1 142 4.7e-05 13.4 0.0 1 1 4.5e-06 6.2e-05 13.0 0.0 22 77 24 73 5 79 0.76 # 9040 # 9468 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_12 - 143 HTH_24 PF13412.1 48 7.1e-05 12.4 0.0 1 1 1.5e-05 0.00021 10.8 0.0 7 39 24 55 20 59 0.81 # 9040 # 9468 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_5 - 280 AAA_25 PF13481.1 194 4.9e-38 120.6 0.0 1 1 5e-39 7e-38 120.1 0.0 14 192 12 183 5 185 0.88 # 3632 # 4471 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.670 1_12 - 143 HTH_20 PF12840.2 61 1.6e-05 14.9 0.1 1 1 8.6e-06 0.00012 12.1 0.0 21 46 30 55 16 57 0.84 # 9040 # 9468 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_7 - 272 Pterin_bind PF00809.17 210 3.9e-61 196.1 0.0 1 1 3.4e-62 4.7e-61 195.9 0.0 1 209 10 216 10 217 0.98 # 5617 # 6432 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.608 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/6dfd6603-a3e2-4d56-bf28-2fbb88238a68 # Target file: checkm_output/bins/pn172/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn172/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6dfd6603-a3e2-4d56-bf28-2fbb88238a68 checkm_output/bins/pn172/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:21:49 2017 # [ok]