# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_14 - 211 HTH_38 PF13936.1 44 0.00013 12.1 0.1 1 1 7.1e-06 0.00013 12.1 0.1 13 39 172 199 164 202 0.83 # 12463 # 13095 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.520 1_18 - 263 CbiA PF01656.18 195 7e-19 58.4 0.0 1 1 5e-20 9e-19 58.1 0.0 1 161 12 204 12 229 0.80 # 16301 # 17089 # 1 # ID=1_18;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.431 1_12 - 91 rve PF00665.21 120 2e-06 18.5 0.0 1 1 1.9e-07 3.4e-06 17.7 0.0 9 52 42 83 38 89 0.85 # 11411 # 11683 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.480 1_18 - 263 MipZ PF09140.6 261 1e-10 31.5 0.0 1 2 1.4e-06 2.4e-05 13.9 0.0 2 39 11 48 10 60 0.92 # 16301 # 17089 # 1 # ID=1_18;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.431 1_18 - 263 MipZ PF09140.6 261 1e-10 31.5 0.0 2 2 4.1e-07 7.4e-06 15.6 0.0 61 127 95 162 86 165 0.82 # 16301 # 17089 # 1 # ID=1_18;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.431 1_14 - 211 HTH_3 PF01381.17 55 4.5e-06 17.0 1.2 1 1 5.5e-07 9.9e-06 15.9 0.0 1 30 172 201 172 202 0.93 # 12463 # 13095 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.520 1_14 - 211 HTH_23 PF13384.1 50 3.3e-06 17.2 0.1 1 1 1.2e-06 1e-05 15.7 0.1 14 37 175 200 165 204 0.78 # 12463 # 13095 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.520 1_12 - 91 HTH_23 PF13384.1 50 0.00012 12.3 0.6 1 1 3.5e-05 0.00031 11.0 0.5 28 41 8 21 7 29 0.87 # 11411 # 11683 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.480 1_14 - 211 HTH_7 PF02796.10 45 7.5e-05 13.1 0.2 1 1 1.1e-05 0.0002 11.7 0.1 17 43 176 202 161 204 0.79 # 12463 # 13095 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.520 1_18 - 263 TIGR01968 TIGR01968 261 3.6e-09 26.4 0.1 1 2 2.7e-07 4.9e-06 16.2 0.0 2 40 10 48 9 55 0.92 # 16301 # 17089 # 1 # ID=1_18;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.431 1_18 - 263 TIGR01968 TIGR01968 261 3.6e-09 26.4 0.1 2 2 7e-05 0.0013 8.3 0.0 102 141 124 163 112 175 0.86 # 16301 # 17089 # 1 # ID=1_18;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.431 1_14 - 211 HTH_28 PF13518.1 52 2.3e-05 14.9 0.0 1 1 4.5e-06 8e-05 13.2 0.0 8 33 176 201 167 207 0.86 # 12463 # 13095 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.520 1_14 - 211 HTH_31 PF13560.1 64 1.2e-06 19.3 0.1 1 1 6.5e-08 1.2e-06 19.3 0.1 5 36 171 202 170 207 0.91 # 12463 # 13095 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.520 1_18 - 263 VirC1 PF07015.6 231 0.00016 11.2 0.0 1 2 0.0036 0.065 2.7 0.0 2 37 10 45 9 55 0.79 # 16301 # 17089 # 1 # ID=1_18;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.431 1_18 - 263 VirC1 PF07015.6 231 0.00016 11.2 0.0 2 2 0.00025 0.0044 6.5 0.0 82 117 132 167 108 192 0.82 # 16301 # 17089 # 1 # ID=1_18;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.431 1_6 - 111 Transposase_20 PF02371.11 87 4.8e-19 58.9 0.3 1 1 1.8e-19 3.2e-18 56.2 0.3 1 76 33 102 33 109 0.91 # 4481 # 4813 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.520 1_12 - 91 DDE_Tnp_IS240 PF13610.1 140 3.3e-20 63.0 0.1 1 1 2.9e-21 5.2e-20 62.3 0.1 3 42 41 80 40 83 0.96 # 11411 # 11683 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.480 1_14 - 211 LacI PF00356.16 46 1.6e-07 21.4 0.1 1 1 2.7e-08 4.8e-07 19.9 0.1 2 23 183 204 182 207 0.87 # 12463 # 13095 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.520 1_18 - 263 AAA_31 PF13614.1 157 1.4e-07 22.1 0.0 1 1 3.1e-08 5.5e-07 20.1 0.0 1 135 10 151 10 171 0.82 # 16301 # 17089 # 1 # ID=1_18;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.431 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/f0304e90-1990-4abe-993b-864e02b8beaa # Target file: checkm_output/bins/pn170/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn170/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f0304e90-1990-4abe-993b-864e02b8beaa checkm_output/bins/pn170/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:21:53 2017 # [ok]