# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 80 HTH_DeoR PF08220.7 57 2.7e-07 17.6 0.0 1 1 2.4e-07 4.7e-07 16.8 0.0 20 47 1 28 1 29 0.96 # 1309 # 1548 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 1_2 - 80 HTH_38 PF13936.1 44 2.9e-06 14.3 0.0 1 1 2.4e-06 4.8e-06 13.6 0.0 27 41 2 16 1 17 0.92 # 1309 # 1548 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 1_2 - 80 MarR PF01047.17 59 1.4e-07 18.7 0.0 1 1 1.4e-07 2.8e-07 17.7 0.0 23 49 1 27 1 30 0.94 # 1309 # 1548 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 1_2 - 80 HTH_Tnp_4 PF13613.1 53 1.9e-05 11.7 0.0 1 1 1.4e-05 2.8e-05 11.1 0.0 25 44 1 20 1 22 0.86 # 1309 # 1548 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 1_2 - 80 GntR PF00392.16 64 3.3e-07 17.2 0.0 1 1 2.3e-07 4.6e-07 16.7 0.0 30 58 1 29 1 34 0.92 # 1309 # 1548 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 1_2 - 80 HTH_3 PF01381.17 55 3.7e-07 17.4 0.0 1 1 2.6e-07 5.3e-07 17.0 0.0 15 31 1 17 1 24 0.93 # 1309 # 1548 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 1_2 - 80 HTH_23 PF13384.1 50 9e-08 19.2 0.0 1 1 1e-07 2.1e-07 18.0 0.0 24 39 2 17 1 25 0.89 # 1309 # 1548 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 1_2 - 80 HTH_19 PF12844.2 64 9.6e-06 13.1 0.1 1 1 7.5e-06 1.5e-05 12.5 0.1 18 34 1 17 1 23 0.96 # 1309 # 1548 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 1_2 - 80 HTH_28 PF13518.1 52 4.1e-08 20.7 0.0 1 1 3e-08 6e-08 20.1 0.0 18 44 1 25 1 33 0.80 # 1309 # 1548 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 1_2 - 80 HTH_36 PF13730.1 55 1.5e-07 18.9 0.1 1 1 1.4e-07 2.9e-07 18.1 0.1 31 53 1 23 1 25 0.92 # 1309 # 1548 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 1_2 - 80 MerR PF00376.18 38 1.3e-05 12.2 0.0 1 1 1.2e-05 2.3e-05 11.4 0.0 5 19 1 15 1 30 0.95 # 1309 # 1548 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 1_2 - 80 HTH_17 PF12728.2 51 4e-07 17.7 0.0 1 1 3.1e-07 6.2e-07 17.1 0.0 7 23 1 17 1 35 0.77 # 1309 # 1548 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 1_2 - 80 HTH_11 PF08279.7 55 2e-08 21.3 0.0 1 1 1.7e-08 3.3e-08 20.6 0.0 21 44 1 28 1 33 0.85 # 1309 # 1548 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 1_2 - 80 MarR_2 PF12802.2 62 1.9e-05 11.8 0.0 1 1 1.5e-05 3e-05 11.2 0.0 27 54 1 28 1 33 0.88 # 1309 # 1548 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 1_2 - 80 HTH_5 PF01022.15 47 1.9e-05 11.8 0.0 1 1 1.5e-05 3e-05 11.1 0.0 21 40 1 20 1 23 0.92 # 1309 # 1548 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 1_2 - 80 TrmB PF01978.14 68 3.1e-06 14.4 0.0 1 1 2.3e-06 4.5e-06 13.8 0.0 28 58 1 31 1 43 0.84 # 1309 # 1548 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 1_2 - 80 HTH_Crp_2 PF13545.1 76 4e-06 14.1 0.0 1 1 2.9e-06 5.7e-06 13.6 0.0 34 58 1 25 1 33 0.93 # 1309 # 1548 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/67546ed0-48cd-48eb-8a27-a3263609c3a7 # Target file: checkm_output/bins/pn160/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn160/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/67546ed0-48cd-48eb-8a27-a3263609c3a7 checkm_output/bins/pn160/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:21:29 2017 # [ok]