# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 106 HTH_IclR PF09339.5 52 4.2e-05 12.8 0.4 1 2 5.6e-05 0.00056 9.2 0.0 20 39 5 24 2 26 0.91 # 1687 # 2004 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.399 1_3 - 106 HTH_IclR PF09339.5 52 4.2e-05 12.8 0.4 2 2 0.019 0.19 1.2 0.0 20 32 28 40 25 54 0.76 # 1687 # 2004 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.399 1_2 - 319 Rep_3 PF01051.16 222 1.5e-45 145.1 6.4 1 2 1.5e-46 1.5e-45 145.1 6.4 3 221 4 224 2 225 0.92 # 723 # 1679 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.351 1_2 - 319 Rep_3 PF01051.16 222 1.5e-45 145.1 6.4 2 2 0.069 0.69 -1.0 0.0 125 144 273 292 239 302 0.82 # 723 # 1679 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.351 1_4 - 378 Glyco_trans_1_2 PF13524.1 92 4.9e-12 35.8 0.0 1 1 9e-13 9e-12 34.9 0.0 9 85 286 364 275 371 0.89 # 2961 # 4094 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.324 1_4 - 378 ACT_7 PF13840.1 65 0.0001 11.5 0.5 1 1 3.4e-05 0.00034 9.9 0.1 8 48 2 41 1 41 0.81 # 2961 # 4094 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.324 1_4 - 378 Glyco_trans_4_2 PF13477.1 139 9.4e-17 50.8 0.6 1 1 1.9e-17 1.9e-16 49.8 0.6 1 136 2 154 2 157 0.75 # 2961 # 4094 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.324 1_3 - 106 MerR_1 PF13411.1 69 2.5e-05 13.7 0.0 1 1 4.2e-06 4.2e-05 13.0 0.0 2 28 5 31 4 61 0.88 # 1687 # 2004 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.399 1_4 - 378 Glyco_trans_1_4 PF13692.1 135 2e-23 72.7 0.0 1 1 3.6e-24 3.6e-23 71.9 0.0 6 135 201 341 197 341 0.82 # 2961 # 4094 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.324 1_4 - 378 IF2_N PF04760.10 54 8.7e-05 11.9 0.6 1 1 2.9e-05 0.00029 10.2 0.0 2 24 27 49 19 54 0.94 # 2961 # 4094 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.324 1_4 - 378 Glycos_transf_1 PF00534.15 172 4.9e-37 116.6 0.0 1 1 8.6e-38 8.6e-37 115.8 0.0 10 170 192 353 187 355 0.92 # 2961 # 4094 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.324 1_3 - 106 HTH_17 PF12728.2 51 4.3e-06 16.7 0.0 1 1 5.9e-07 5.9e-06 16.2 0.0 2 28 4 30 3 50 0.82 # 1687 # 2004 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.399 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/71f890d5-ac1f-42f3-9130-ad6fdb26df28 # Target file: checkm_output/bins/pn16/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn16/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/71f890d5-ac1f-42f3-9130-ad6fdb26df28 checkm_output/bins/pn16/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:21:29 2017 # [ok]