# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_74 - 228 Cons_hypoth95 PF03602.10 183 7.3e-06 18.3 0.0 1 2 0.00027 0.026 6.8 0.0 112 168 18 76 9 83 0.68 # 67406 # 68089 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_74 - 228 Cons_hypoth95 PF03602.10 183 7.3e-06 18.3 0.0 2 2 3.5e-05 0.0034 9.6 0.0 41 62 162 183 144 218 0.77 # 67406 # 68089 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_13 - 518 ABC_tran PF00005.22 137 7.3e-05 16.0 0.0 1 1 5.3e-06 0.00026 14.2 0.0 12 37 226 251 217 288 0.81 # 10094 # 11647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_25 - 383 ABC_tran PF00005.22 137 0.00011 15.4 0.0 1 1 4.3e-06 0.00021 14.5 0.0 16 35 162 181 152 211 0.87 # 22553 # 23701 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_74 - 228 TIGR00095 TIGR00095 194 0.00028 13.1 0.0 1 2 0.0015 0.15 4.3 0.0 123 138 19 34 8 79 0.74 # 67406 # 68089 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_74 - 228 TIGR00095 TIGR00095 194 0.00028 13.1 0.0 2 2 0.00023 0.022 6.9 0.0 53 86 164 199 152 218 0.77 # 67406 # 68089 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_25 - 383 MobB PF03205.9 140 1.8e-05 17.3 0.0 1 2 0.017 1.6 1.3 0.0 14 60 61 108 61 127 0.88 # 22553 # 23701 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_25 - 383 MobB PF03205.9 140 1.8e-05 17.3 0.0 2 2 3.1e-06 0.0003 13.4 0.0 5 26 162 183 160 193 0.90 # 22553 # 23701 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_62 - 199 TilS_C PF11734.3 74 0.00026 13.1 0.0 1 1 6.3e-06 0.00062 11.9 0.0 29 45 7 23 6 28 0.88 # 59012 # 59608 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_13 - 518 AAA_19 PF13245.1 76 9.3e-05 15.1 0.0 1 1 2.6e-06 0.00026 13.7 0.0 10 46 226 259 218 268 0.79 # 10094 # 11647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_81 - 211 CbiA PF01656.18 195 6.2e-16 51.2 0.1 1 1 1.5e-17 1.5e-15 50.0 0.1 3 178 7 164 5 180 0.75 # 72040 # 72672 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 1_74 - 228 MethyltransfD12 PF02086.10 260 0.00033 13.0 0.0 1 2 0.014 1.4 1.1 0.0 175 188 18 31 8 91 0.80 # 67406 # 68089 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_74 - 228 MethyltransfD12 PF02086.10 260 0.00033 13.0 0.0 2 2 3.3e-05 0.0033 9.7 0.0 16 46 157 189 148 197 0.78 # 67406 # 68089 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_1 - 96 Sigma70_r4_2 PF08281.7 54 4.8e-08 25.3 0.1 1 1 1.4e-09 1.4e-07 23.8 0.0 10 54 21 64 12 64 0.83 # 686 # 973 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_13 - 518 AAA_23 PF13476.1 202 0.00013 15.3 0.2 1 1 9.7e-06 0.00048 13.4 0.0 20 38 226 244 208 249 0.84 # 10094 # 11647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_25 - 383 AAA_23 PF13476.1 202 0.00022 14.5 0.0 1 1 7.3e-06 0.00036 13.8 0.0 19 40 157 178 142 209 0.83 # 22553 # 23701 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_95 - 283 TIGR00573 TIGR00573 217 1.6e-15 49.8 0.0 1 1 2.7e-17 2.7e-15 49.0 0.0 12 181 107 274 103 281 0.80 # 83065 # 83913 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.565 1_74 - 228 Methyltransf_26 PF13659.1 117 1.1e-11 37.8 0.1 1 2 2.6e-07 2.5e-05 17.2 0.0 57 114 7 71 2 74 0.69 # 67406 # 68089 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_74 - 228 Methyltransf_26 PF13659.1 117 1.1e-11 37.8 0.1 2 2 9.7e-08 9.5e-06 18.6 0.0 4 45 167 207 164 223 0.82 # 67406 # 68089 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_13 - 518 AAA_30 PF13604.1 196 0.00031 13.2 0.0 1 1 5.8e-06 0.00057 12.4 0.0 4 44 211 251 209 276 0.84 # 10094 # 11647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_62 - 199 TIGR02433 TIGR02433 47 0.00018 13.5 0.1 1 1 4.4e-06 0.00044 12.3 0.0 29 45 7 23 6 25 0.90 # 59012 # 59608 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 96 GerE PF00196.14 58 1.4e-06 20.5 0.0 1 1 1.9e-08 1.9e-06 20.1 0.0 3 49 21 67 19 72 0.89 # 686 # 973 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_51 - 764 TraG-D_C PF12696.2 128 4e-07 22.9 0.2 1 1 9.1e-09 8.9e-07 21.7 0.2 1 94 437 529 437 555 0.81 # 47556 # 49847 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_81 - 211 MipZ PF09140.6 261 6e-09 28.2 0.2 1 3 7.2e-07 7e-05 14.8 0.1 5 51 7 53 3 59 0.89 # 72040 # 72672 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 1_81 - 211 MipZ PF09140.6 261 6e-09 28.2 0.2 2 3 1.2e-05 0.0012 10.8 0.0 88 135 69 116 58 151 0.82 # 72040 # 72672 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 1_81 - 211 MipZ PF09140.6 261 6e-09 28.2 0.2 3 3 0.066 6.4 -1.4 0.0 206 237 161 193 137 202 0.76 # 72040 # 72672 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 1_74 - 228 UPF0020 PF01170.13 180 1.4e-05 17.6 0.0 1 2 0.00028 0.027 6.9 0.0 103 121 17 35 4 89 0.71 # 67406 # 68089 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_74 - 228 UPF0020 PF01170.13 180 1.4e-05 17.6 0.0 2 2 7.3e-05 0.0071 8.8 0.0 28 54 163 189 160 221 0.66 # 67406 # 68089 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_7 - 197 Trp_repressor PF01371.14 88 0.00039 13.2 0.0 1 1 6.1e-06 0.0006 12.6 0.0 1 40 102 141 102 145 0.95 # 4532 # 5122 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.371 1_13 - 518 AAA PF00004.24 132 0.00025 14.2 0.1 1 2 0.00065 0.032 7.3 0.0 1 21 228 248 228 278 0.83 # 10094 # 11647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_13 - 518 AAA PF00004.24 132 0.00025 14.2 0.1 2 2 0.034 1.7 1.8 0.0 9 66 442 508 436 515 0.64 # 10094 # 11647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_81 - 211 AAA PF00004.24 132 0.00081 12.5 0.0 1 1 2.9e-05 0.0014 11.7 0.0 8 38 13 55 9 104 0.73 # 72040 # 72672 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 1_65 - 653 KorB PF08535.5 93 1.8e-05 17.7 0.0 1 1 6e-07 5.9e-05 16.1 0.0 2 43 152 193 151 203 0.93 # 60810 # 62768 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.586 1_74 - 228 N6_N4_Mtase PF01555.13 231 6.8e-36 116.7 0.0 1 2 7.6e-15 7.4e-13 41.3 0.0 1 114 21 124 21 137 0.89 # 67406 # 68089 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_74 - 228 N6_N4_Mtase PF01555.13 231 6.8e-36 116.7 0.0 2 2 9.2e-25 9e-23 73.8 0.0 169 228 141 200 126 203 0.90 # 67406 # 68089 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_79 - 325 Hydantoinase_A PF01968.13 290 8.5e-06 17.9 2.1 1 2 1.3e-06 0.00013 14.0 0.6 75 119 164 205 149 232 0.79 # 70453 # 71427 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_79 - 325 Hydantoinase_A PF01968.13 290 8.5e-06 17.9 2.1 2 2 0.0028 0.28 3.1 0.0 222 262 252 296 213 311 0.71 # 70453 # 71427 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_13 - 518 AAA_16 PF13191.1 185 9.1e-05 15.4 0.0 1 1 6.4e-06 0.00031 13.6 0.0 8 51 213 252 212 301 0.78 # 10094 # 11647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_25 - 383 AAA_16 PF13191.1 185 0.00029 13.7 0.0 1 1 1.2e-05 0.0006 12.7 0.0 27 52 160 188 148 282 0.82 # 22553 # 23701 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_25 - 383 AAA_22 PF13401.1 131 9.8e-06 18.6 0.0 1 1 4.9e-07 2.4e-05 17.4 0.0 4 46 157 196 152 233 0.76 # 22553 # 23701 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_13 - 518 AAA_22 PF13401.1 131 0.00026 14.0 0.0 1 1 1.3e-05 0.00062 12.8 0.0 6 28 227 249 222 330 0.77 # 10094 # 11647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_55 - 283 Methyltransf_27 PF13708.1 194 2.6e-67 218.9 0.0 1 1 3.6e-69 3.5e-67 218.5 0.0 2 194 85 278 84 278 0.96 # 53580 # 54428 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 1_13 - 518 AAA_29 PF13555.1 62 2.7e-05 16.5 0.0 1 1 1.1e-06 5.6e-05 15.6 0.0 21 40 224 242 217 254 0.83 # 10094 # 11647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_25 - 383 AAA_29 PF13555.1 62 3.8e-05 16.1 0.0 1 1 2.3e-06 0.00011 14.6 0.0 26 44 160 178 151 186 0.83 # 22553 # 23701 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_95 - 283 RNase_H_2 PF13482.1 164 0.00011 14.9 0.0 1 1 7.8e-06 0.00076 12.2 0.0 1 79 105 199 105 255 0.57 # 83065 # 83913 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.565 1_56 - 84 HTH_3 PF01381.17 55 3.9e-05 16.4 0.0 1 1 1e-06 0.0001 15.1 0.0 1 34 6 39 6 45 0.90 # 55008 # 55259 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_65 - 653 HTH_23 PF13384.1 50 4.2e-07 22.4 0.3 1 1 2.2e-07 7.1e-06 18.5 0.0 13 40 149 176 143 180 0.91 # 60810 # 62768 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.586 1_1 - 96 HTH_23 PF13384.1 50 3.6e-05 16.3 0.0 1 1 1.5e-06 4.9e-05 15.9 0.0 12 41 31 60 24 73 0.76 # 686 # 973 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_56 - 84 HTH_23 PF13384.1 50 6.2e-05 15.5 0.2 1 1 1.1e-05 0.00035 13.2 0.1 17 33 14 30 6 38 0.86 # 55008 # 55259 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_87 - 116 zf-DHHC PF01529.15 174 0.0023 10.2 4.8 1 1 2.9e-05 0.0029 9.9 4.8 88 151 32 108 10 113 0.82 # 76356 # 76703 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_56 - 84 HTH_19 PF12844.2 64 8.4e-05 15.5 0.0 1 1 1.2e-06 0.00011 15.1 0.0 7 53 9 56 5 67 0.87 # 55008 # 55259 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_56 - 84 DUF1870 PF08965.5 118 0.00024 13.6 1.0 1 1 3e-06 0.00029 13.4 1.0 1 75 1 78 1 82 0.69 # 55008 # 55259 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_1 - 96 HTH_29 PF13551.1 112 0.00014 14.9 0.0 1 1 4.3e-06 0.00021 14.3 0.0 8 36 33 60 27 76 0.79 # 686 # 973 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_65 - 653 HTH_29 PF13551.1 112 0.00021 14.3 0.1 1 1 2e-05 0.00099 12.2 0.0 4 37 145 178 142 234 0.85 # 60810 # 62768 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.586 1_95 - 283 DNA_pol_A_exo1 PF01612.15 176 1.2e-05 17.7 0.0 1 1 2.7e-07 2.7e-05 16.6 0.0 20 95 102 196 87 266 0.84 # 83065 # 83913 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.565 1_13 - 518 G-alpha PF00503.15 389 0.00062 11.3 0.0 1 2 0.054 5.3 -1.6 0.0 234 272 70 113 29 117 0.79 # 10094 # 11647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_13 - 518 G-alpha PF00503.15 389 0.00062 11.3 0.0 2 2 1.9e-05 0.0018 9.8 0.0 58 87 225 254 214 325 0.84 # 10094 # 11647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_22 - 195 DNA_pol3_delta PF06144.8 172 2e-06 20.3 0.0 1 1 3e-08 2.9e-06 19.7 0.0 35 99 92 152 74 179 0.80 # 20304 # 20888 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.403 1_51 - 764 TrwB_AAD_bind PF10412.4 386 1.9e-06 19.5 0.2 1 2 9.3e-05 0.0092 7.4 0.0 11 32 132 153 126 157 0.84 # 47556 # 49847 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_51 - 764 TrwB_AAD_bind PF10412.4 386 1.9e-06 19.5 0.2 2 2 2.7e-05 0.0026 9.2 0.1 247 332 440 525 427 561 0.88 # 47556 # 49847 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_81 - 211 TIGR01968 TIGR01968 261 1.4e-06 20.4 0.5 1 2 3.4e-06 0.00033 12.6 0.1 3 40 4 41 2 43 0.91 # 72040 # 72672 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 1_81 - 211 TIGR01968 TIGR01968 261 1.4e-06 20.4 0.5 2 2 0.00028 0.027 6.3 0.0 110 169 78 137 63 157 0.76 # 72040 # 72672 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 1_25 - 383 AAA_18 PF13238.1 129 1.5e-05 18.2 0.0 1 1 6e-07 2.9e-05 17.3 0.0 2 42 161 197 161 230 0.83 # 22553 # 23701 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_13 - 518 AAA_18 PF13238.1 129 0.00032 13.9 0.0 1 1 2.1e-05 0.0011 12.2 0.0 1 18 228 245 228 316 0.86 # 10094 # 11647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_74 - 228 Methyltransf_15 PF09445.5 164 0.00078 11.9 0.0 1 2 0.045 4.4 -0.3 0.0 53 79 4 29 2 32 0.90 # 67406 # 68089 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_74 - 228 Methyltransf_15 PF09445.5 164 0.00078 11.9 0.0 2 2 4.2e-05 0.0042 9.5 0.0 3 31 166 194 164 209 0.86 # 67406 # 68089 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_95 - 283 TIGR01406 TIGR01406 231 3e-17 55.5 0.0 1 1 5.2e-19 5.1e-17 54.8 0.0 4 170 106 268 104 280 0.78 # 83065 # 83913 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.565 1_33 - 235 DUF3810 PF12725.2 318 0.00085 11.1 0.8 1 1 1.4e-05 0.0014 10.4 0.8 90 174 106 189 95 194 0.86 # 31751 # 32455 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.506 1_25 - 383 DUF87 PF01935.12 229 0.0006 12.5 0.0 1 1 1.1e-05 0.0011 11.7 0.0 28 56 162 191 161 192 0.88 # 22553 # 23701 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_1 - 96 HTH_28 PF13518.1 52 0.00014 14.7 0.0 1 1 4.3e-06 0.00043 13.2 0.0 9 38 33 62 26 75 0.86 # 686 # 973 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_95 - 283 TIGR01298 TIGR01298 200 5.9e-07 22.0 1.0 1 1 5.7e-08 5.6e-06 18.8 1.0 93 189 167 267 97 275 0.80 # 83065 # 83913 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.565 1_56 - 84 HTH_31 PF13560.1 64 5.7e-07 22.6 1.7 1 1 9.5e-09 9.3e-07 21.9 1.1 3 43 3 43 2 58 0.86 # 55008 # 55259 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_13 - 518 T2SE PF00437.15 272 2.3e-41 134.3 0.1 1 1 9.6e-43 4.7e-41 133.3 0.0 10 271 97 373 90 374 0.85 # 10094 # 11647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_25 - 383 T2SE PF00437.15 272 7.9e-36 116.2 0.0 1 1 2.4e-37 1.2e-35 115.6 0.0 120 269 149 306 127 309 0.88 # 22553 # 23701 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_79 - 325 StbA PF06406.6 318 1.4e-136 447.4 1.2 1 1 1.6e-138 1.5e-136 447.3 1.2 1 317 1 319 1 320 0.99 # 70453 # 71427 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_25 - 383 AAA_17 PF13207.1 121 1.8e-05 18.4 0.1 1 2 4.7e-06 0.00023 14.9 0.0 3 47 161 208 161 251 0.76 # 22553 # 23701 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_25 - 383 AAA_17 PF13207.1 121 1.8e-05 18.4 0.1 2 2 0.086 4.2 1.1 0.1 24 113 332 363 274 374 0.60 # 22553 # 23701 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_13 - 518 AAA_17 PF13207.1 121 2.1e-05 18.2 0.2 1 1 2.1e-06 0.0001 16.0 0.0 1 24 227 255 227 345 0.72 # 10094 # 11647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_96 - 94 TIGR02211 TIGR02211 221 0.00013 14.1 0.0 1 1 1.4e-06 0.00014 14.0 0.0 114 167 14 72 2 87 0.78 # 83953 # 84234 # -1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 1_25 - 383 AAA_25 PF13481.1 194 0.00019 13.7 0.0 1 1 7e-06 0.00034 12.9 0.0 24 58 148 182 124 207 0.78 # 22553 # 23701 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_13 - 518 AAA_25 PF13481.1 194 0.00027 13.2 0.1 1 2 8.7e-05 0.0043 9.3 0.0 25 65 217 260 200 270 0.72 # 10094 # 11647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_13 - 518 AAA_25 PF13481.1 194 0.00027 13.2 0.1 2 2 0.039 1.9 0.7 0.0 153 190 297 337 292 340 0.74 # 10094 # 11647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_13 - 518 AAA_14 PF13173.1 128 0.00077 12.3 0.0 1 1 3.7e-05 0.0036 10.1 0.0 5 30 228 254 225 286 0.80 # 10094 # 11647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_1 - 96 HTH_Tnp_ISL3 PF13542.1 52 5.9e-05 15.1 0.0 1 1 9.7e-07 9.5e-05 14.5 0.0 29 50 38 59 34 60 0.89 # 686 # 973 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_25 - 383 RNA_helicase PF00910.17 107 9.4e-05 15.5 0.0 1 1 1.9e-06 0.00019 14.5 0.0 2 28 161 187 160 205 0.83 # 22553 # 23701 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_25 - 383 ATP_bind_1 PF03029.12 238 4.6e-05 15.9 0.0 1 1 7.2e-07 7e-05 15.3 0.0 1 23 162 184 162 197 0.86 # 22553 # 23701 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_13 - 518 DAP3 PF10236.4 309 0.00061 11.6 0.0 1 1 1.2e-05 0.0012 10.7 0.0 21 42 223 244 215 253 0.86 # 10094 # 11647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_79 - 325 MreB_Mbl PF06723.8 327 0.00014 13.3 0.6 1 2 0.00012 0.012 7.0 0.1 123 162 142 183 116 193 0.73 # 70453 # 71427 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_79 - 325 MreB_Mbl PF06723.8 327 0.00014 13.3 0.6 2 2 0.00056 0.055 4.8 0.1 272 318 274 320 236 324 0.67 # 70453 # 71427 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_95 - 283 RNase_T PF00929.19 164 3.3e-26 85.4 0.0 1 1 4.3e-28 4.2e-26 85.0 0.0 1 163 105 262 105 263 0.95 # 83065 # 83913 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.565 1_38 - 1015 AAA_10 PF12846.2 304 1.1e-30 99.9 0.0 1 1 1e-31 2.6e-30 98.7 0.0 8 302 502 897 498 898 0.89 # 34563 # 37607 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.508 1_51 - 764 AAA_10 PF12846.2 304 2.5e-05 16.6 1.0 1 1 3.1e-06 7.7e-05 15.1 1.0 2 287 137 501 136 514 0.62 # 47556 # 49847 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_13 - 518 AAA_10 PF12846.2 304 0.00022 13.6 0.0 1 1 1.7e-05 0.00041 12.7 0.0 4 30 228 256 226 320 0.81 # 10094 # 11647 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_25 - 383 AAA_10 PF12846.2 304 0.0005 12.4 0.0 1 1 4e-05 0.00099 11.4 0.0 2 21 158 177 157 196 0.83 # 22553 # 23701 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_81 - 211 ArsA_ATPase PF02374.10 305 0.00028 12.8 1.2 1 2 7.6e-06 0.00075 11.4 0.8 5 32 7 34 1 48 0.85 # 72040 # 72672 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 1_81 - 211 ArsA_ATPase PF02374.10 305 0.00028 12.8 1.2 2 2 0.04 3.9 -0.8 0.0 108 134 57 87 35 89 0.66 # 72040 # 72672 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 1_81 - 211 AAA_31 PF13614.1 157 9e-07 21.8 0.0 1 2 8.4e-07 8.2e-05 15.5 0.0 2 44 4 46 4 61 0.86 # 72040 # 72672 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 1_81 - 211 AAA_31 PF13614.1 157 9e-07 21.8 0.0 2 2 0.0023 0.22 4.3 0.0 112 151 72 112 57 117 0.82 # 72040 # 72672 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 1_57 - 61 Yae1_N PF09811.4 39 5.7e-05 15.5 0.4 1 1 8.5e-07 8.3e-05 15.0 0.4 15 26 9 20 8 26 0.92 # 55290 # 55472 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_67 - 176 SSB PF00436.20 104 6.4e-41 131.4 0.4 1 1 8.6e-43 8.4e-41 131.0 0.4 1 101 6 109 6 112 0.96 # 63118 # 63645 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/03865f68-a5c8-4ed5-97dc-cc47568a8700 # Target file: checkm_output/bins/pn146/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn146/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/03865f68-a5c8-4ed5-97dc-cc47568a8700 checkm_output/bins/pn146/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:21:15 2017 # [ok]