# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 228 Cons_hypoth95 PF03602.10 183 5e-06 18.6 0.0 1 2 0.00019 0.015 7.2 0.0 112 148 18 56 2 82 0.63 # 1845 # 2528 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_5 - 228 Cons_hypoth95 PF03602.10 183 5e-06 18.6 0.0 2 2 3.9e-05 0.0031 9.5 0.0 41 62 162 183 145 219 0.78 # 1845 # 2528 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_24 - 277 HTH_IclR PF09339.5 52 7.1e-05 15.0 0.1 1 1 2.7e-06 0.00021 13.5 0.0 15 40 14 39 13 40 0.94 # 17949 # 18779 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_57 - 887 Peptidase_M66 PF10462.4 305 1.4e-132 433.7 0.7 1 1 3.4e-134 2.7e-132 432.8 0.7 1 305 237 538 237 538 0.99 # 48623 # 51283 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_54 - 501 ABC_tran PF00005.22 137 2.5e-05 17.2 0.0 1 1 7.2e-07 5.8e-05 16.0 0.0 13 61 253 305 248 376 0.68 # 44194 # 45696 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_37 - 270 TIGR01173 TIGR01173 452 2.4e-09 28.7 2.3 1 2 0.00015 0.012 6.6 0.3 254 296 180 204 143 215 0.62 # 32557 # 33366 # -1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.399 1_37 - 270 TIGR01173 TIGR01173 452 2.4e-09 28.7 2.3 2 2 2.4e-09 1.9e-07 22.5 0.1 392 443 215 267 208 269 0.92 # 32557 # 33366 # -1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.399 1_5 - 228 TIGR00095 TIGR00095 194 0.00012 14.0 0.0 1 2 0.00072 0.058 5.3 0.0 124 138 20 34 2 78 0.73 # 1845 # 2528 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_5 - 228 TIGR00095 TIGR00095 194 0.00012 14.0 0.0 2 2 0.00024 0.02 6.8 0.0 53 86 164 199 155 218 0.77 # 1845 # 2528 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_19 - 296 rve_3 PF13683.1 67 5.9e-14 44.0 0.1 1 1 1.8e-15 1.4e-13 42.8 0.0 6 67 216 277 211 277 0.93 # 13313 # 14200 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_47 - 391 T2SL PF05134.8 230 6.5e-68 220.9 3.6 1 1 1.2e-69 9.4e-68 220.4 3.6 3 230 1 227 1 227 0.96 # 38813 # 39985 # -1 # ID=1_47;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.564 1_24 - 277 HTH_38 PF13936.1 44 2.2e-10 32.6 0.1 1 1 1.3e-11 1.1e-09 30.4 0.1 6 41 3 38 2 40 0.94 # 17949 # 18779 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_42 - 75 Ribosomal_S11 PF00411.14 110 0.00018 14.3 0.0 1 1 2.3e-06 0.00018 14.3 0.0 33 83 10 59 4 70 0.82 # 36463 # 36687 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.467 1_54 - 501 MobB PF03205.9 140 0.00017 13.9 0.0 1 1 4.1e-06 0.00032 13.0 0.0 2 35 253 286 252 295 0.88 # 44194 # 45696 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_19 - 296 Sigma54_DBD PF04552.8 160 0.00056 12.0 0.1 1 1 1.1e-05 0.0009 11.4 0.1 100 153 45 96 28 103 0.78 # 13313 # 14200 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_54 - 501 AAA_19 PF13245.1 76 6e-07 21.8 0.0 1 1 3.4e-08 2.8e-06 19.7 0.0 4 35 244 276 241 296 0.82 # 44194 # 45696 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_10 - 402 CbiA PF01656.18 195 1.3e-23 75.9 0.0 1 1 3e-25 2.4e-23 75.1 0.0 1 158 112 319 112 351 0.71 # 5472 # 6677 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_5 - 228 MethyltransfD12 PF02086.10 260 0.00046 12.3 0.0 1 2 0.023 1.8 0.4 0.0 178 188 21 31 13 87 0.85 # 1845 # 2528 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_5 - 228 MethyltransfD12 PF02086.10 260 0.00046 12.3 0.0 2 2 4e-05 0.0032 9.5 0.0 20 46 163 189 148 197 0.78 # 1845 # 2528 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_24 - 277 Sigma70_r4_2 PF08281.7 54 5.7e-06 18.4 0.0 1 1 1.6e-07 1.3e-05 17.3 0.0 25 48 16 39 12 40 0.94 # 17949 # 18779 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_13 - 326 Rep_3 PF01051.16 222 7.6e-33 106.5 0.1 1 1 1.3e-34 1e-32 106.1 0.1 3 214 10 265 8 271 0.90 # 8654 # 9631 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.516 1_19 - 296 rve PF00665.21 120 1.3e-27 88.9 0.1 1 1 1.1e-28 4.4e-27 87.2 0.0 2 119 125 239 124 240 0.97 # 13313 # 14200 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_24 - 277 rve PF00665.21 120 5e-21 67.6 0.1 1 1 2.7e-22 1.1e-20 66.6 0.1 3 119 118 243 117 244 0.96 # 17949 # 18779 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_54 - 501 AAA_23 PF13476.1 202 4.6e-06 19.6 0.0 1 1 1.1e-07 8.8e-06 18.7 0.0 18 38 250 270 236 282 0.84 # 44194 # 45696 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_5 - 228 Methyltransf_26 PF13659.1 117 2.9e-13 42.5 0.1 1 2 8.9e-09 7.1e-07 21.9 0.0 53 112 3 69 2 74 0.75 # 1845 # 2528 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_5 - 228 Methyltransf_26 PF13659.1 117 2.9e-13 42.5 0.1 2 2 1e-07 8.2e-06 18.5 0.0 4 44 167 206 164 222 0.82 # 1845 # 2528 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_54 - 501 Zeta_toxin PF06414.7 201 0.00031 12.5 0.0 1 1 7.1e-06 0.00057 11.6 0.0 18 48 253 285 238 289 0.83 # 44194 # 45696 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_65 - 274 AAA_30 PF13604.1 196 2.2e-05 16.7 3.6 1 1 8.2e-07 3.3e-05 16.1 3.6 8 133 3 122 2 140 0.83 # 55941 # 56762 # -1 # ID=1_65;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.612 1_54 - 501 AAA_30 PF13604.1 196 0.00024 13.3 0.0 1 1 1.3e-05 0.00054 12.1 0.0 8 49 241 282 235 285 0.80 # 44194 # 45696 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_28 - 135 HTH_Tnp_1 PF01527.15 76 1.5e-18 59.2 0.0 1 1 7.2e-20 1.9e-18 58.8 0.0 2 58 9 72 8 101 0.84 # 22006 # 22410 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_18 - 109 HTH_Tnp_1 PF01527.15 76 8.6e-13 40.7 1.2 1 1 1.3e-13 3.4e-12 38.8 1.2 1 74 1 87 1 88 0.86 # 12987 # 13313 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 1_59 - 49 HTH_Tnp_1 PF01527.15 76 8.8e-09 27.9 0.0 1 1 3.5e-10 9.2e-09 27.8 0.0 3 48 2 47 1 48 0.94 # 52536 # 52682 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_24 - 277 GerE PF00196.14 58 8.2e-05 14.5 0.0 1 1 2e-06 0.00016 13.6 0.0 17 39 16 38 8 40 0.88 # 17949 # 18779 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_10 - 402 MipZ PF09140.6 261 3.3e-06 18.9 0.5 1 2 4.1e-05 0.0033 9.1 0.0 1 50 110 164 110 190 0.77 # 5472 # 6677 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 402 MipZ PF09140.6 261 3.3e-06 18.9 0.5 2 2 0.00012 0.0093 7.6 0.1 90 135 237 282 227 287 0.89 # 5472 # 6677 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_5 - 228 UPF0020 PF01170.13 180 2.8e-06 19.6 0.0 1 2 7.6e-05 0.0061 8.7 0.0 102 124 16 38 2 89 0.67 # 1845 # 2528 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_5 - 228 UPF0020 PF01170.13 180 2.8e-06 19.6 0.0 2 2 6.3e-05 0.005 9.0 0.0 28 54 163 189 158 220 0.67 # 1845 # 2528 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_74 - 447 DDE_Tnp_1 PF01609.16 213 4.6e-15 48.3 0.0 1 1 8.9e-17 7.1e-15 47.7 0.0 3 213 130 357 128 357 0.73 # 61382 # 62722 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_26 - 513 DivIC PF04977.10 80 0.0091 8.2 8.6 1 2 0.0014 0.11 4.7 0.6 18 38 29 49 26 52 0.86 # 20075 # 21613 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 1_26 - 513 DivIC PF04977.10 80 0.0091 8.2 8.6 2 2 0.00019 0.015 7.4 0.1 21 49 58 86 54 90 0.88 # 20075 # 21613 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 1_9 - 321 Trp_repressor PF01371.14 88 0.00046 12.7 0.5 1 1 1.7e-05 0.0014 11.2 0.2 15 69 127 180 117 192 0.85 # 4513 # 5475 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_57 - 887 Reprolysin_5 PF13688.1 196 0.0011 11.4 3.1 1 1 3.5e-05 0.0028 10.2 3.1 116 158 397 444 345 462 0.74 # 48623 # 51283 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_30 - 214 Sigma70_r4 PF04545.11 50 3.2e-06 19.0 0.2 1 1 4e-08 3.2e-06 19.0 0.2 7 41 170 204 169 206 0.96 # 25621 # 26262 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.460 1_5 - 228 N6_N4_Mtase PF01555.13 231 8.1e-37 119.4 0.0 1 1 4.5e-36 3.6e-34 110.8 0.0 1 228 21 200 21 203 0.89 # 1845 # 2528 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_19 - 296 rve_2 PF13333.1 52 1.6e-08 27.1 0.0 1 1 4.2e-10 3.4e-08 26.1 0.0 1 44 230 276 230 283 0.88 # 13313 # 14200 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_54 - 501 AAA_16 PF13191.1 185 3.5e-08 26.2 0.7 1 2 0.023 1.8 1.1 0.1 40 121 120 182 119 222 0.72 # 44194 # 45696 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_54 - 501 AAA_16 PF13191.1 185 3.5e-08 26.2 0.7 2 2 4.1e-09 3.3e-07 23.0 0.1 15 119 242 355 237 404 0.71 # 44194 # 45696 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_54 - 501 AAA_22 PF13401.1 131 3.9e-06 19.6 0.0 1 1 1.4e-07 1.1e-05 18.2 0.0 4 53 251 295 248 352 0.79 # 44194 # 45696 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_24 - 277 NUMOD1 PF07453.8 37 0.00011 14.7 0.0 1 1 2.4e-06 0.00019 13.9 0.0 20 37 21 38 19 38 0.92 # 17949 # 18779 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_54 - 501 AAA_29 PF13555.1 62 6e-07 21.6 0.0 1 1 1.8e-08 1.4e-06 20.4 0.0 22 51 251 279 241 284 0.83 # 44194 # 45696 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_59 - 49 LZ_Tnp_IS481 PF13011.1 85 9.9e-06 18.5 0.1 1 1 1.6e-07 1.3e-05 18.1 0.1 20 50 17 47 12 48 0.93 # 52536 # 52682 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_26 - 513 Mnd1 PF03962.10 188 0.096 4.9 8.9 1 2 0.00043 0.034 6.4 4.6 72 143 24 95 11 102 0.75 # 20075 # 21613 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 1_26 - 513 Mnd1 PF03962.10 188 0.096 4.9 8.9 2 2 0.06 4.8 -0.6 0.1 110 154 374 418 347 444 0.63 # 20075 # 21613 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 1_24 - 277 HTH_3 PF01381.17 55 3.1e-07 22.8 0.1 1 1 7.4e-09 5.9e-07 21.9 0.1 7 37 15 45 8 48 0.91 # 17949 # 18779 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_54 - 501 Rad17 PF03215.10 519 5.7e-05 14.5 0.0 1 1 1e-06 8.4e-05 13.9 0.0 38 64 244 270 238 312 0.81 # 44194 # 45696 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_30 - 214 HTH_23 PF13384.1 50 8.2e-08 24.4 0.3 1 1 1.3e-08 2.1e-07 23.1 0.3 4 43 169 209 166 211 0.80 # 25621 # 26262 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.460 1_24 - 277 HTH_23 PF13384.1 50 2.3e-07 23.0 0.0 1 1 4.2e-08 6.8e-07 21.5 0.0 9 40 9 40 2 43 0.89 # 17949 # 18779 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_18 - 109 HTH_23 PF13384.1 50 1.9e-05 16.9 0.3 1 1 2.8e-06 4.4e-05 15.7 0.1 5 42 10 55 8 65 0.84 # 12987 # 13313 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 1_59 - 49 HTH_23 PF13384.1 50 4.2e-05 15.8 0.0 1 1 2.8e-06 4.5e-05 15.7 0.0 7 40 12 45 7 48 0.83 # 52536 # 52682 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_28 - 135 HTH_23 PF13384.1 50 0.00022 13.5 0.0 1 1 2.2e-05 0.00035 12.9 0.0 7 44 19 57 14 62 0.85 # 22006 # 22410 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_10 - 402 Fer4_NifH PF00142.13 273 9.6e-06 17.5 0.0 1 1 2.3e-07 1.8e-05 16.6 0.0 7 67 117 182 112 195 0.80 # 5472 # 6677 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_24 - 277 HTH_7 PF02796.10 45 1e-09 30.8 0.1 1 1 3.2e-11 2.5e-09 29.5 0.1 13 44 9 40 5 41 0.93 # 17949 # 18779 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_24 - 277 HTH_19 PF12844.2 64 1.6e-05 17.5 0.0 1 1 3.4e-07 2.7e-05 16.8 0.0 7 52 12 58 11 70 0.82 # 17949 # 18779 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_24 - 277 HTH_29 PF13551.1 112 1.7e-05 17.6 0.1 1 1 4.4e-07 3.5e-05 16.6 0.1 6 35 12 40 8 103 0.72 # 17949 # 18779 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_57 - 887 Reprolysin_4 PF13583.1 206 0.002 10.2 2.7 1 1 2e-05 0.0016 10.5 0.7 134 154 424 445 375 477 0.74 # 48623 # 51283 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_26 - 513 DDE_Tnp_IS66 PF03050.9 271 2e-103 337.9 0.0 1 1 2.5e-105 2e-103 337.9 0.0 1 271 175 462 175 462 0.98 # 20075 # 21613 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 1_9 - 321 Sigma70_r3 PF04539.11 78 0.00011 14.7 0.1 1 1 4.3e-06 0.00034 13.1 0.1 10 46 150 186 144 188 0.87 # 4513 # 5475 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_54 - 501 Arch_ATPase PF01637.13 234 0.0001 14.6 0.0 1 1 2.2e-06 0.00018 13.9 0.0 15 68 247 299 241 341 0.73 # 44194 # 45696 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_54 - 501 AAA_18 PF13238.1 129 2.7e-06 20.3 0.0 1 2 0.037 3 0.8 0.1 25 110 61 150 43 190 0.74 # 44194 # 45696 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_54 - 501 AAA_18 PF13238.1 129 2.7e-06 20.3 0.0 2 2 3.5e-07 2.8e-05 17.0 0.0 1 69 254 328 254 389 0.64 # 44194 # 45696 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_5 - 228 Methyltransf_15 PF09445.5 164 0.00022 13.4 0.0 1 2 0.012 0.99 1.5 0.0 53 80 4 30 2 34 0.91 # 1845 # 2528 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_5 - 228 Methyltransf_15 PF09445.5 164 0.00022 13.4 0.0 2 2 4.3e-05 0.0035 9.5 0.0 3 31 166 194 164 208 0.86 # 1845 # 2528 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_24 - 277 HTH_28 PF13518.1 52 2.5e-07 23.3 0.0 1 1 3e-08 6e-07 22.1 0.0 7 34 12 39 8 40 0.89 # 17949 # 18779 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_28 - 135 HTH_28 PF13518.1 52 2.6e-06 20.0 0.0 1 1 2.1e-07 4.1e-06 19.4 0.0 1 39 18 57 18 63 0.91 # 22006 # 22410 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_59 - 49 HTH_28 PF13518.1 52 1.7e-05 17.4 0.0 1 1 9.2e-07 1.8e-05 17.3 0.0 1 36 10 46 10 48 0.91 # 52536 # 52682 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_30 - 214 HTH_28 PF13518.1 52 0.0002 14.0 0.2 1 1 2.2e-05 0.00045 12.9 0.2 2 38 171 209 170 210 0.86 # 25621 # 26262 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.460 1_24 - 277 HTH_24 PF13412.1 48 1.2e-05 17.3 0.0 1 1 2.9e-07 2.3e-05 16.4 0.0 10 40 11 40 10 43 0.88 # 17949 # 18779 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_24 - 277 HTH_30 PF13556.1 59 0.0001 14.5 0.0 1 1 2.9e-06 0.00023 13.4 0.0 10 34 15 39 10 43 0.86 # 17949 # 18779 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_24 - 277 HTH_31 PF13560.1 64 1.4e-05 17.8 0.0 1 1 9.2e-07 3.7e-05 16.5 0.0 12 54 15 60 13 61 0.85 # 17949 # 18779 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_30 - 214 HTH_31 PF13560.1 64 0.00027 13.8 1.0 1 1 2.2e-05 0.00086 12.1 0.4 9 34 178 203 143 212 0.80 # 25621 # 26262 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.460 1_13 - 326 HTH_36 PF13730.1 55 0.0016 11.2 1.3 1 2 0.025 2 1.3 0.0 26 45 103 122 85 125 0.65 # 8654 # 9631 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.516 1_13 - 326 HTH_36 PF13730.1 55 0.0016 11.2 1.3 2 2 0.00043 0.034 7.0 0.0 27 55 221 255 201 255 0.62 # 8654 # 9631 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.516 1_54 - 501 T2SE PF00437.15 272 4.2e-90 293.9 3.5 1 1 7.1e-92 5.6e-90 293.4 3.5 3 271 124 389 122 390 0.98 # 44194 # 45696 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_54 - 501 AAA_17 PF13207.1 121 9.2e-06 19.1 0.1 1 1 5.8e-07 4.7e-05 16.8 0.0 1 24 253 276 253 354 0.74 # 44194 # 45696 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_26 - 513 DZR PF12773.2 50 5.4e-05 15.6 0.6 1 1 1.3e-06 0.0001 14.7 0.6 10 41 115 166 110 170 0.88 # 20075 # 21613 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 1_39 - 94 TIGR02211 TIGR02211 221 0.0001 14.1 0.0 1 1 1.4e-06 0.00011 14.0 0.0 114 168 14 73 2 87 0.78 # 33981 # 34262 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_54 - 501 AAA_25 PF13481.1 194 0.00016 13.7 0.0 1 1 6.1e-06 0.00049 12.1 0.0 17 53 235 271 222 290 0.81 # 44194 # 45696 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_57 - 887 Reprolysin_2 PF13574.1 174 0.00058 12.5 6.7 1 1 2.2e-06 0.00018 14.2 3.4 42 131 347 447 332 487 0.73 # 48623 # 51283 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_54 - 501 AAA_14 PF13173.1 128 5.6e-06 18.9 0.0 1 1 1.4e-07 1.1e-05 17.9 0.0 3 103 252 362 250 368 0.65 # 44194 # 45696 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_10 - 402 VirC1 PF07015.6 231 0.00047 11.8 0.0 1 2 0.015 1.2 0.7 0.0 4 26 112 134 101 143 0.82 # 5472 # 6677 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 402 VirC1 PF07015.6 231 0.00047 11.8 0.0 2 2 6.8e-05 0.0054 8.4 0.0 83 154 245 322 232 361 0.70 # 5472 # 6677 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_24 - 277 HTH_Tnp_ISL3 PF13542.1 52 0.00024 12.9 0.1 1 2 1.4e-05 0.0011 10.7 0.0 22 49 12 39 2 40 0.82 # 17949 # 18779 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_24 - 277 HTH_Tnp_ISL3 PF13542.1 52 0.00024 12.9 0.1 2 2 0.09 7.2 -1.4 0.0 35 45 122 132 121 133 0.84 # 17949 # 18779 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_54 - 501 AAA_33 PF13671.1 143 0.00043 12.8 0.0 1 1 2.4e-05 0.0019 10.7 0.0 2 75 254 325 253 343 0.60 # 44194 # 45696 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_24 - 277 CENP-B_N PF04218.8 53 0.00047 12.2 0.1 1 1 1.1e-05 0.0009 11.3 0.1 20 47 15 42 2 43 0.83 # 17949 # 18779 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_57 - 887 Reprolysin_3 PF13582.1 124 0.0026 10.9 7.6 1 1 1.7e-05 0.0014 11.8 4.3 90 123 403 444 345 445 0.63 # 48623 # 51283 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_54 - 501 NTPase_1 PF03266.10 168 0.00035 12.9 0.1 1 2 2.8e-05 0.0022 10.3 0.0 2 26 254 278 253 286 0.86 # 44194 # 45696 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_54 - 501 NTPase_1 PF03266.10 168 0.00035 12.9 0.1 2 2 0.051 4 -0.3 0.0 82 108 306 333 293 367 0.59 # 44194 # 45696 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_19 - 296 DDE_Tnp_IS240 PF13610.1 140 3.9e-08 26.0 0.0 1 1 7.7e-10 6.2e-08 25.3 0.0 2 137 130 267 129 269 0.92 # 13313 # 14200 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_24 - 277 HTH_26 PF13443.1 63 4.2e-07 22.8 0.0 1 1 1e-08 8.1e-07 21.8 0.0 4 41 11 48 10 58 0.90 # 17949 # 18779 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_24 - 277 HTH_11 PF08279.7 55 4.7e-06 18.8 0.0 1 1 1.4e-07 1.1e-05 17.6 0.0 8 37 12 39 5 40 0.80 # 17949 # 18779 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_54 - 501 AAA_10 PF12846.2 304 0.0004 12.4 0.0 1 1 9e-06 0.00072 11.6 0.0 4 37 254 288 251 306 0.80 # 44194 # 45696 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_13 - 326 HTH_20 PF12840.2 61 4.7e-05 15.8 0.0 1 2 0.0011 0.044 6.3 0.0 24 47 102 125 98 125 0.89 # 8654 # 9631 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.516 1_13 - 326 HTH_20 PF12840.2 61 4.7e-05 15.8 0.0 2 2 0.00069 0.028 6.9 0.1 19 58 213 259 185 262 0.77 # 8654 # 9631 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.516 1_24 - 277 HTH_20 PF12840.2 61 0.00066 12.1 0.0 1 1 3.3e-05 0.0013 11.1 0.0 19 46 13 39 10 40 0.89 # 17949 # 18779 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_5 - 228 Methyltransf_11 PF08241.7 95 0.00076 12.6 0.0 1 2 0.0037 0.3 4.3 0.0 78 93 53 68 48 70 0.82 # 1845 # 2528 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_5 - 228 Methyltransf_11 PF08241.7 95 0.00076 12.6 0.0 2 2 0.0014 0.11 5.7 0.0 5 54 172 220 168 226 0.82 # 1845 # 2528 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_10 - 402 ArsA_ATPase PF02374.10 305 0.00026 12.7 0.0 1 1 7.8e-06 0.00062 11.4 0.0 4 136 113 255 110 257 0.67 # 5472 # 6677 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_48 - 326 T2SK PF03934.8 280 1.1e-82 269.9 1.9 1 1 1.6e-84 1.3e-82 269.6 1.9 3 276 32 309 30 313 0.94 # 40024 # 41001 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_10 - 402 AAA_31 PF13614.1 157 2.5e-08 26.6 0.1 1 2 1.1e-05 0.00089 11.8 0.0 2 91 111 205 110 225 0.85 # 5472 # 6677 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 402 AAA_31 PF13614.1 157 2.5e-08 26.6 0.1 2 2 1.1e-05 0.00085 11.9 0.0 109 148 237 275 227 280 0.87 # 5472 # 6677 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_54 - 501 AAA_11 PF13086.1 236 7.8e-05 14.9 0.0 1 1 1.9e-06 0.00015 13.9 0.0 9 106 242 338 235 403 0.67 # 44194 # 45696 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_19 - 296 HTH_21 PF13276.1 60 5.5e-19 60.6 3.5 1 1 1.6e-20 1.3e-18 59.5 3.5 2 60 46 103 44 103 0.94 # 13313 # 14200 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/52707755-b0e3-4eab-9511-1a4749668073 # Target file: checkm_output/bins/pn139/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn139/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/52707755-b0e3-4eab-9511-1a4749668073 checkm_output/bins/pn139/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:21:02 2017 # [ok]