# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 141 HTH_22 PF13309.1 64 1.7e-05 13.0 0.1 1 1 1e-05 4e-05 11.8 0.1 44 63 5 24 2 25 0.89 # 2768 # 3190 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.416 1_4 - 141 DUF134 PF02001.11 106 4.7e-06 14.9 0.1 1 1 1.8e-06 7.3e-06 14.3 0.1 59 104 5 50 2 52 0.89 # 2768 # 3190 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.416 1_4 - 141 HTH_8 PF02954.14 42 6.9e-06 14.0 0.0 1 1 3.4e-06 1.4e-05 13.1 0.0 19 37 4 22 2 24 0.89 # 2768 # 3190 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.416 1_4 - 141 NUMOD1 PF07453.8 37 4e-07 18.3 0.0 1 1 3.2e-07 1.3e-06 16.7 0.0 18 37 5 24 4 24 0.94 # 2768 # 3190 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.416 1_4 - 141 HTH_Tnp_IS630 PF01710.11 120 1.4e-06 16.4 0.0 1 1 5.4e-07 2.2e-06 15.8 0.0 20 62 5 49 2 82 0.85 # 2768 # 3190 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.416 1_4 - 141 HTH_23 PF13384.1 50 3e-06 15.3 0.0 1 1 1.7e-06 6.9e-06 14.1 0.0 18 38 4 24 1 26 0.87 # 2768 # 3190 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.416 1_4 - 141 HTH_7 PF02796.10 45 5.3e-06 14.7 0.4 1 1 3.2e-06 1.3e-05 13.5 0.1 23 43 5 25 4 27 0.89 # 2768 # 3190 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.416 1_4 - 141 HTH_29 PF13551.1 112 2.3e-05 13.0 0.1 1 1 1.6e-05 6.4e-05 11.5 0.0 12 34 4 25 1 33 0.90 # 2768 # 3190 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.416 1_4 - 141 DUF3853 PF12964.2 96 2.1e-06 16.0 0.1 1 1 1.1e-06 4.2e-06 15.0 0.1 48 90 6 50 3 56 0.86 # 2768 # 3190 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.416 1_4 - 141 HTH_28 PF13518.1 52 9.4e-07 17.3 0.1 1 1 9.7e-07 3.9e-06 15.3 0.0 13 34 4 25 2 29 0.91 # 2768 # 3190 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.416 1_4 - 141 HTH_17 PF12728.2 51 1.1e-11 33.4 0.0 1 1 4.8e-12 1.9e-11 32.5 0.0 3 37 5 43 4 53 0.82 # 2768 # 3190 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.416 1_4 - 141 Phage_AlpA PF05930.7 51 1.8e-05 12.9 0.0 1 1 8e-06 3.2e-05 12.1 0.0 4 28 4 28 1 29 0.88 # 2768 # 3190 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.416 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/97e8e039-c9f4-46b3-b9c4-86e89675cfeb # Target file: checkm_output/bins/pn105/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn105/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/97e8e039-c9f4-46b3-b9c4-86e89675cfeb checkm_output/bins/pn105/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:20:14 2017 # [ok]