# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 179 MarR PF01047.17 59 1.5e-06 14.4 0.0 1 1 3.2e-06 3.2e-06 13.3 0.0 20 47 82 109 80 113 0.90 # 320 # 856 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.466 1_1 - 179 HTH_Tnp_4 PF13613.1 53 1.7e-07 17.2 0.0 1 1 2.9e-07 2.9e-07 16.5 0.0 22 45 82 105 81 106 0.93 # 320 # 856 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.466 1_1 - 179 Crp PF00325.15 32 1.1e-06 14.5 0.0 1 1 2.1e-06 2.1e-06 13.7 0.0 8 32 85 109 82 109 0.93 # 320 # 856 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.466 1_1 - 179 HTH_3 PF01381.17 55 6.1e-06 12.6 0.0 1 1 1.2e-05 1.2e-05 11.6 0.0 12 30 82 100 81 101 0.87 # 320 # 856 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.466 1_1 - 179 HTH_23 PF13384.1 50 3.8e-07 16.2 0.0 1 1 1e-06 1e-06 14.9 0.0 23 46 85 108 77 110 0.88 # 320 # 856 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.466 1_1 - 179 RepL PF05732.6 165 1e-08 21.0 0.0 1 1 1.5e-08 1.5e-08 20.4 0.0 30 130 31 138 4 149 0.80 # 320 # 856 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.466 1_1 - 179 HTH_28 PF13518.1 52 1.5e-06 14.7 0.0 1 1 3.3e-06 3.3e-06 13.6 0.0 18 41 85 108 75 115 0.90 # 320 # 856 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.466 1_1 - 179 HTH_24 PF13412.1 48 3.8e-07 16.0 0.0 1 1 1.1e-06 1.1e-06 14.6 0.0 20 47 82 109 80 110 0.93 # 320 # 856 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.466 1_1 - 179 HTH_36 PF13730.1 55 2.5e-09 23.7 0.0 1 1 4.5e-09 4.5e-09 22.9 0.0 10 53 63 107 56 109 0.82 # 320 # 856 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.466 1_1 - 179 HTH_17 PF12728.2 51 5.6e-06 13.1 0.0 1 1 1.2e-05 1.2e-05 12.1 0.0 7 29 85 114 83 119 0.77 # 320 # 856 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.466 1_1 - 179 HTH_11 PF08279.7 55 2.3e-07 16.9 0.0 1 1 4.7e-07 4.7e-07 16.0 0.0 21 44 85 112 82 117 0.85 # 320 # 856 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.466 1_1 - 179 MarR_2 PF12802.2 62 5.1e-06 12.7 0.0 1 1 8.3e-06 8.3e-06 12.0 0.0 24 54 82 112 50 117 0.85 # 320 # 856 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.466 1_1 - 179 HTH_Crp_2 PF13545.1 76 9.2e-10 24.8 0.0 1 1 1.9e-09 1.9e-09 23.8 0.0 9 58 66 109 60 112 0.80 # 320 # 856 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.466 1_1 - 179 DUF1670 PF07900.6 220 2.8e-06 13.0 0.0 1 1 5.2e-06 5.2e-06 12.2 0.0 108 143 82 118 72 120 0.82 # 320 # 856 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.466 1_1 - 179 HTH_20 PF12840.2 61 5.9e-06 12.6 0.0 1 1 1.3e-05 1.3e-05 11.4 0.0 28 54 83 109 57 114 0.88 # 320 # 856 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.466 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/3173df4c-cfaf-4b23-8472-c95a2c21f06d # Target file: checkm_output/bins/pn103/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn103/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3173df4c-cfaf-4b23-8472-c95a2c21f06d checkm_output/bins/pn103/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:20:15 2017 # [ok]