# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_18 - 108 CP_ATPgrasp_1 PF04174.8 330 2.7e-05 13.6 0.0 1 1 1.5e-06 3e-05 13.4 0.0 24 97 13 85 10 101 0.84 # 11334 # 11657 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.537 1_15 - 499 AAA_27 PF13514.1 1111 0.0023 6.2 8.6 1 2 4.8e-05 0.001 7.4 3.8 854 927 143 216 127 225 0.80 # 8890 # 10386 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.560 1_15 - 499 AAA_27 PF13514.1 1111 0.0023 6.2 8.6 2 2 0.01 0.21 -0.2 0.2 245 326 252 336 234 349 0.54 # 8890 # 10386 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.560 1_15 - 499 DUF3584 PF12128.3 1201 7.9e-05 10.7 6.6 1 1 4.9e-06 0.0001 10.4 6.6 223 412 147 341 117 351 0.83 # 8890 # 10386 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.560 1_7 - 76 HTH_7 PF02796.10 45 4.5e-15 46.1 0.1 1 1 4e-16 8.4e-15 45.2 0.0 1 43 31 73 31 74 0.98 # 3690 # 3917 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.539 1_20 - 215 Lambda_tail_I PF06805.7 82 3.4e-11 33.6 0.0 1 1 3.1e-12 6.4e-11 32.7 0.0 2 82 62 146 61 146 0.88 # 12703 # 13347 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.530 1_15 - 499 Seryl_tRNA_N PF02403.17 108 0.00046 10.9 10.3 1 3 0.00085 0.018 5.9 4.3 54 104 123 173 120 177 0.91 # 8890 # 10386 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.560 1_15 - 499 Seryl_tRNA_N PF02403.17 108 0.00046 10.9 10.3 2 3 0.0023 0.048 4.5 0.2 66 97 180 215 168 224 0.57 # 8890 # 10386 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.560 1_15 - 499 Seryl_tRNA_N PF02403.17 108 0.00046 10.9 10.3 3 3 0.006 0.13 3.1 0.1 37 99 282 345 261 348 0.81 # 8890 # 10386 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.560 1_15 - 499 AAA_13 PF13166.1 712 2.1e-05 13.8 8.4 1 2 7.5e-06 0.00016 10.9 4.0 407 471 140 204 117 255 0.70 # 8890 # 10386 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.560 1_15 - 499 AAA_13 PF13166.1 712 2.1e-05 13.8 8.4 2 2 0.0004 0.0084 5.2 0.1 268 352 294 343 259 356 0.52 # 8890 # 10386 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.560 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/15462b3b-94d6-4e8e-a530-9252087412e2 # Target file: checkm_output/bins/pm999/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm999/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/15462b3b-94d6-4e8e-a530-9252087412e2 checkm_output/bins/pm999/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:20:03 2017 # [ok]