# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 4_3 - 183 TIGR01173 TIGR01173 452 3.6e-09 26.2 0.2 1 1 2.5e-10 5.3e-09 25.7 0.2 390 430 109 149 100 158 0.89 # 1872 # 2420 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_2 - 102 HTH_34 PF13601.1 80 9.8e-11 32.4 0.1 1 1 6.6e-12 1.4e-10 31.9 0.1 25 79 39 93 30 94 0.92 # 1456 # 1761 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_2 - 102 MarR PF01047.17 59 9.3e-06 16.1 0.0 1 1 6.2e-07 1.3e-05 15.6 0.0 29 58 40 69 13 70 0.92 # 1456 # 1761 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_4 - 195 TetR_N PF00440.18 47 6.9e-09 26.0 0.0 1 1 6.3e-10 1.3e-08 25.1 0.0 2 46 13 57 12 58 0.95 # 3245 # 3829 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.607 1_2 - 102 PadR PF03551.9 75 1.2e-23 73.4 0.5 1 1 8e-25 1.7e-23 73.0 0.5 1 74 15 84 15 85 0.97 # 1456 # 1761 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_3 - 255 rve PF00665.21 120 2.3e-14 44.3 0.0 1 2 0.041 0.43 1.5 0.0 83 102 30 49 7 51 0.90 # 1988 # 2752 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_3 - 255 rve PF00665.21 120 2.3e-14 44.3 0.0 2 2 3.4e-14 3.5e-13 40.5 0.0 8 117 73 179 69 182 0.90 # 1988 # 2752 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 5_1 - 235 rve PF00665.21 120 6.9e-14 42.7 0.1 1 2 0.03 0.31 1.9 0.0 78 102 27 49 6 54 0.84 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 5_1 - 235 rve PF00665.21 120 6.9e-14 42.7 0.1 2 2 1.2e-13 1.3e-12 38.7 0.0 9 119 75 182 70 183 0.89 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 5_1 - 235 HTH_Tnp_1 PF01527.15 76 5.2e-05 13.9 0.3 1 1 5.4e-06 0.00011 12.9 0.3 4 51 6 58 4 63 0.79 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 5_1 - 235 DDE_3 PF13358.1 146 0.00014 12.3 0.0 1 1 2.1e-05 0.00044 10.7 0.0 32 90 82 141 59 146 0.87 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 102 Replic_Relax PF13814.1 191 7.3e-06 16.6 0.1 1 1 3.9e-07 8.2e-06 16.5 0.1 16 77 31 90 17 96 0.85 # 1456 # 1761 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_2 - 102 DUF3116 PF11313.3 85 8.6e-05 12.9 0.1 1 1 5.7e-06 0.00012 12.4 0.1 49 83 50 88 39 90 0.75 # 1456 # 1761 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 5_1 - 235 HTH_32 PF13565.1 77 2.7e-07 22.1 0.2 1 1 1.1e-07 1.2e-06 20.0 0.0 26 76 5 50 2 51 0.83 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_3 - 255 HTH_32 PF13565.1 77 4e-05 15.1 0.2 1 1 1.3e-05 0.00014 13.4 0.2 37 76 15 50 6 51 0.83 # 1988 # 2752 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 5_1 - 235 HTH_23 PF13384.1 50 1.3e-06 18.8 0.7 1 2 0.016 0.33 1.6 0.0 7 27 11 35 7 36 0.69 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 5_1 - 235 HTH_23 PF13384.1 50 1.3e-06 18.8 0.7 2 2 1.9e-06 3.9e-05 14.0 0.1 28 42 41 55 40 62 0.87 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 102 FeoC PF09012.5 69 0.0002 11.8 0.0 1 1 1.4e-05 0.00029 11.3 0.0 24 48 38 62 30 72 0.81 # 1456 # 1761 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 5_1 - 235 DDE_Tnp_IS66 PF03050.9 271 4.9e-13 39.5 0.3 1 1 6e-14 6.3e-13 39.2 0.3 5 132 10 144 6 174 0.87 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_3 - 255 DDE_Tnp_IS66 PF03050.9 271 2.4e-10 30.7 0.4 1 1 3.4e-11 3.5e-10 30.2 0.4 11 133 16 144 8 183 0.86 # 1988 # 2752 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 5_1 - 235 HTH_28 PF13518.1 52 1.2e-05 16.0 1.2 1 1 2.5e-06 5.3e-05 14.0 1.2 22 36 40 54 13 55 0.76 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 102 HTH_12 PF08461.5 66 5.6e-07 20.0 0.7 1 1 4.3e-08 9.1e-07 19.3 0.7 6 65 15 82 12 83 0.77 # 1456 # 1761 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_2 - 102 FUR PF01475.14 120 4.2e-06 17.4 0.0 1 1 2.1e-07 4.4e-06 17.4 0.0 29 74 29 77 12 99 0.79 # 1456 # 1761 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_2 - 102 Penicillinase_R PF03965.11 115 5.3e-06 17.3 0.0 1 1 2.8e-07 6e-06 17.1 0.0 22 58 28 67 13 99 0.81 # 1456 # 1761 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_3 - 255 DDE_Tnp_IS240 PF13610.1 140 2.1e-54 174.0 0.0 1 1 2.6e-55 2.7e-54 173.6 0.0 3 139 73 211 71 212 0.98 # 1988 # 2752 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 5_1 - 235 DDE_Tnp_IS240 PF13610.1 140 1.6e-53 171.2 0.0 1 1 2.1e-54 2.2e-53 170.7 0.0 4 139 75 212 73 213 0.99 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 102 TrmB PF01978.14 68 5.2e-05 13.7 0.1 1 1 7.3e-06 0.00015 12.2 0.1 34 62 40 73 31 78 0.84 # 1456 # 1761 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_6 - 302 LYTB PF02401.13 281 0.00014 11.5 0.0 1 1 2e-05 0.00042 9.9 0.0 236 272 81 117 70 124 0.91 # 5064 # 5969 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 2_7 - 280 Pterin_bind PF00809.17 210 5.4e-59 189.7 0.0 1 1 3e-60 6.4e-59 189.5 0.0 1 210 7 216 7 216 0.98 # 4084 # 4923 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/a5eeef77-af08-48b9-9272-c99c94321ff5 # Target file: checkm_output/bins/pm979/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm979/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a5eeef77-af08-48b9-9272-c99c94321ff5 checkm_output/bins/pm979/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:19:36 2017 # [ok]