# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_60 - 227 Cons_hypoth95 PF03602.10 183 1.1e-05 17.5 0.0 1 2 0.00038 0.029 6.3 0.0 112 127 18 33 2 78 0.82 # 57739 # 58419 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 1_60 - 227 Cons_hypoth95 PF03602.10 183 1.1e-05 17.5 0.0 2 2 4.5e-05 0.0034 9.3 0.0 41 62 162 183 144 218 0.79 # 57739 # 58419 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 1_33 - 313 KaiC PF06745.8 227 0.00016 13.4 0.0 1 1 3.1e-06 0.00023 12.8 0.0 21 71 119 167 115 238 0.84 # 33203 # 34141 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_67 - 209 TrkA_N PF02254.13 116 0.00024 13.6 0.0 1 1 6e-06 0.00046 12.7 0.0 5 82 13 97 12 105 0.73 # 64354 # 64980 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_22 - 1634 HTH_IclR PF09339.5 52 9.3e-05 14.6 0.0 1 1 6e-06 0.00023 13.3 0.0 11 40 473 502 472 503 0.92 # 20920 # 25821 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.584 1_42 - 70 HTH_IclR PF09339.5 52 0.00037 12.6 0.1 1 1 1.4e-05 0.00052 12.2 0.1 4 33 8 36 7 47 0.92 # 43826 # 44035 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.414 1_33 - 313 ABC_tran PF00005.22 137 7.8e-05 15.5 0.1 1 1 1.9e-06 0.00014 14.7 0.1 13 48 119 154 115 215 0.82 # 33203 # 34141 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_60 - 227 TIGR00095 TIGR00095 194 0.0003 12.7 0.0 1 2 0.001 0.078 4.8 0.0 123 137 19 33 4 79 0.77 # 57739 # 58419 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 1_60 - 227 TIGR00095 TIGR00095 194 0.0003 12.7 0.0 2 2 0.00047 0.036 5.9 0.0 53 72 164 183 155 217 0.84 # 57739 # 58419 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 1_33 - 313 Sigma54_activat PF00158.21 168 0.00037 12.5 0.7 1 2 4.1e-05 0.0031 9.5 0.2 25 45 120 140 104 148 0.85 # 33203 # 34141 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_33 - 313 Sigma54_activat PF00158.21 168 0.00037 12.5 0.7 2 2 0.018 1.3 0.9 0.0 87 119 226 258 145 301 0.50 # 33203 # 34141 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_13 - 1018 FtsK_SpoIIIE PF01580.13 205 0.00013 13.9 0.0 1 1 3.8e-06 0.00029 12.8 0.0 37 75 493 532 462 540 0.78 # 12075 # 15128 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_22 - 1634 HTH_38 PF13936.1 44 7.3e-06 18.1 0.7 1 1 6.8e-07 1.7e-05 16.9 0.2 10 42 470 502 467 504 0.93 # 20920 # 25821 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.584 1_43 - 189 HTH_38 PF13936.1 44 0.00028 13.0 0.0 1 1 2.7e-05 0.00069 11.7 0.0 16 41 29 54 27 55 0.93 # 44263 # 44829 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.432 1_54 - 661 HTH_38 PF13936.1 44 0.00042 12.4 0.3 1 1 9.8e-05 0.0025 10.0 0.0 15 41 149 175 142 176 0.84 # 52110 # 54092 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.591 1_67 - 209 MobB PF03205.9 140 1.7e-05 17.1 0.1 1 1 5.6e-07 4.2e-05 15.8 0.1 10 38 11 38 1 45 0.77 # 64354 # 64980 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_33 - 313 AAA_19 PF13245.1 76 4.3e-06 19.0 0.6 1 1 3e-07 1.1e-05 17.6 0.6 11 36 118 143 111 169 0.85 # 33203 # 34141 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_36 - 505 AAA_19 PF13245.1 76 0.00011 14.5 0.0 1 1 8.6e-06 0.00033 13.0 0.0 9 47 239 274 231 277 0.82 # 35849 # 37363 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_67 - 209 CbiA PF01656.18 195 3.9e-23 74.4 0.1 1 2 1.4e-24 1.1e-22 73.0 0.1 1 158 3 142 3 180 0.76 # 64354 # 64980 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_67 - 209 CbiA PF01656.18 195 3.9e-23 74.4 0.1 2 2 0.0096 0.73 1.7 0.0 119 144 136 161 132 198 0.87 # 64354 # 64980 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_67 - 209 KTI12 PF08433.5 270 0.00046 11.9 0.0 1 1 8.7e-06 0.00066 11.4 0.0 11 41 11 41 1 53 0.82 # 64354 # 64980 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_60 - 227 MethyltransfD12 PF02086.10 260 9.8e-05 14.4 0.0 1 2 0.0066 0.5 2.2 0.0 174 188 17 31 10 84 0.82 # 57739 # 58419 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 1_60 - 227 MethyltransfD12 PF02086.10 260 9.8e-05 14.4 0.0 2 2 2.4e-05 0.0018 10.2 0.0 11 46 152 189 138 199 0.75 # 57739 # 58419 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 1_67 - 209 YhjQ PF06564.7 244 0.00034 12.5 0.0 1 2 3.7e-05 0.0028 9.5 0.1 4 38 3 37 1 50 0.89 # 64354 # 64980 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_67 - 209 YhjQ PF06564.7 244 0.00034 12.5 0.0 2 2 0.028 2.1 0.1 0.0 111 145 72 104 48 114 0.79 # 64354 # 64980 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_33 - 313 AAA_23 PF13476.1 202 3.2e-06 20.1 0.0 1 1 8.1e-08 6.1e-06 19.2 0.0 14 39 110 137 107 189 0.85 # 33203 # 34141 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_67 - 209 AAA_24 PF13479.1 213 0.00016 13.8 0.0 1 1 3.9e-06 0.0003 12.9 0.0 11 77 9 85 1 92 0.82 # 64354 # 64980 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_60 - 227 Methyltransf_26 PF13659.1 117 1.7e-12 39.9 0.0 1 2 9.4e-08 7.1e-06 18.6 0.0 54 114 4 71 2 74 0.74 # 57739 # 58419 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 1_60 - 227 Methyltransf_26 PF13659.1 117 1.7e-12 39.9 0.0 2 2 5.6e-08 4.3e-06 19.3 0.0 4 44 167 206 164 221 0.81 # 57739 # 58419 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 1_33 - 313 Zeta_toxin PF06414.7 201 9e-05 14.1 0.5 1 1 2.3e-06 0.00017 13.2 0.5 18 38 119 139 112 150 0.91 # 33203 # 34141 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_43 - 189 GerE PF00196.14 58 7.1e-06 17.9 0.0 1 2 4.9e-05 0.0018 10.1 0.0 17 54 32 69 28 73 0.89 # 44263 # 44829 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.432 1_43 - 189 GerE PF00196.14 58 7.1e-06 17.9 0.0 2 2 0.0011 0.043 5.7 0.0 3 54 115 166 113 170 0.87 # 44263 # 44829 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.432 1_22 - 1634 GerE PF00196.14 58 0.00016 13.5 0.1 1 1 7.9e-06 0.0003 12.7 0.1 10 35 472 497 468 503 0.92 # 20920 # 25821 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.584 1_67 - 209 MipZ PF09140.6 261 8.9e-21 66.6 0.1 1 2 6.7e-13 5.1e-11 34.6 0.0 2 55 2 54 1 60 0.90 # 64354 # 64980 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_67 - 209 MipZ PF09140.6 261 8.9e-21 66.6 0.1 2 2 1.9e-11 1.5e-09 29.8 0.0 87 139 65 117 57 130 0.92 # 64354 # 64980 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_60 - 227 UPF0020 PF01170.13 180 4.7e-07 22.0 0.0 1 2 3.9e-05 0.003 9.7 0.0 102 118 16 32 2 82 0.76 # 57739 # 58419 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 1_60 - 227 UPF0020 PF01170.13 180 4.7e-07 22.0 0.0 2 2 2.3e-05 0.0017 10.4 0.0 27 73 162 197 158 215 0.69 # 57739 # 58419 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 1_43 - 189 Sigma70_r4 PF04545.11 50 7.7e-05 14.5 0.1 1 1 3.5e-06 0.00026 12.8 0.0 17 48 30 61 27 62 0.84 # 44263 # 44829 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.432 1_54 - 661 KorB PF08535.5 93 3.5e-06 19.7 0.0 1 1 1.2e-07 8.8e-06 18.4 0.0 2 42 153 193 152 221 0.88 # 52110 # 54092 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.591 1_60 - 227 N6_N4_Mtase PF01555.13 231 2.5e-36 117.8 0.0 1 1 9.4e-37 7.2e-35 113.0 0.0 1 228 21 200 21 203 0.89 # 57739 # 58419 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 1_64 - 326 Hydantoinase_A PF01968.13 290 3.3e-05 15.6 1.9 1 2 7.6e-06 0.00058 11.5 0.8 76 103 166 192 153 239 0.74 # 61216 # 62193 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_64 - 326 Hydantoinase_A PF01968.13 290 3.3e-05 15.6 1.9 2 2 0.0059 0.45 2.0 0.1 218 272 253 309 198 320 0.58 # 61216 # 62193 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_33 - 313 AAA_16 PF13191.1 185 0.00023 13.7 0.2 1 1 7.8e-06 0.00059 12.4 0.2 21 47 114 140 107 154 0.83 # 33203 # 34141 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_33 - 313 AAA_22 PF13401.1 131 0.00067 12.3 0.2 1 1 1.5e-05 0.0011 11.6 0.2 5 28 118 141 115 262 0.88 # 33203 # 34141 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_33 - 313 AAA_29 PF13555.1 62 0.0001 14.4 0.2 1 1 1.7e-05 0.00065 11.8 0.1 25 44 119 138 108 140 0.82 # 33203 # 34141 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_13 - 1018 AAA_29 PF13555.1 62 0.00016 13.7 0.1 1 1 1e-05 0.00039 12.5 0.1 24 51 497 524 488 530 0.81 # 12075 # 15128 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_67 - 209 SRP54 PF00448.17 196 1.5e-07 23.6 0.1 1 1 8.2e-09 6.3e-07 21.5 0.1 4 98 2 91 1 138 0.79 # 64354 # 64980 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_54 - 661 HTH_23 PF13384.1 50 1.1e-06 20.8 0.0 1 1 2.1e-07 8.2e-06 18.0 0.0 15 40 152 177 143 181 0.87 # 52110 # 54092 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.591 1_22 - 1634 HTH_23 PF13384.1 50 1.5e-06 20.3 0.0 1 1 1e-07 3.8e-06 19.0 0.0 9 40 472 503 471 511 0.90 # 20920 # 25821 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.584 1_67 - 209 Fer4_NifH PF00142.13 273 5.1e-05 15.0 0.1 1 1 1.6e-06 0.00012 13.8 0.0 8 38 9 39 2 49 0.89 # 64354 # 64980 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_22 - 1634 HTH_7 PF02796.10 45 4.6e-10 31.8 0.2 1 2 8.9e-11 6.8e-09 28.1 0.1 12 44 471 503 465 504 0.91 # 20920 # 25821 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.584 1_22 - 1634 HTH_7 PF02796.10 45 4.6e-10 31.8 0.2 2 2 0.03 2.3 0.8 0.0 9 29 648 672 643 678 0.73 # 20920 # 25821 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.584 1_33 - 313 NB-ARC PF00931.17 287 0.0005 11.5 0.1 1 1 1e-05 0.00076 10.8 0.1 19 47 117 146 108 152 0.85 # 33203 # 34141 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_22 - 1634 HTH_29 PF13551.1 112 1.8e-05 17.4 0.0 1 1 1.6e-06 6e-05 15.7 0.0 3 39 472 507 471 521 0.86 # 20920 # 25821 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.584 1_54 - 661 HTH_29 PF13551.1 112 0.00039 13.1 0.0 1 1 6.3e-05 0.0024 10.6 0.0 9 36 152 178 145 207 0.85 # 52110 # 54092 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.591 1_42 - 70 DUF993 PF06187.6 382 9.4e-05 13.5 0.0 1 1 1.3e-06 0.0001 13.4 0.0 314 366 2 53 1 64 0.87 # 43826 # 44035 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.414 1_33 - 313 AAA_5 PF07728.9 139 3.1e-05 16.2 0.1 1 2 0.003 0.23 3.7 0.1 2 21 120 139 119 170 0.89 # 33203 # 34141 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_33 - 313 AAA_5 PF07728.9 139 3.1e-05 16.2 0.1 2 2 3e-05 0.0022 10.2 0.0 54 107 221 274 182 299 0.80 # 33203 # 34141 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_3 - 734 TrwB_AAD_bind PF10412.4 386 2.9e-10 31.8 0.6 1 3 8.5e-06 0.00065 10.8 0.0 11 52 132 173 126 180 0.83 # 1114 # 3315 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_3 - 734 TrwB_AAD_bind PF10412.4 386 2.9e-10 31.8 0.6 2 3 0.022 1.7 -0.4 0.0 92 142 237 286 229 329 0.71 # 1114 # 3315 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_3 - 734 TrwB_AAD_bind PF10412.4 386 2.9e-10 31.8 0.6 3 3 9.8e-08 7.4e-06 17.2 0.1 248 376 442 569 426 573 0.80 # 1114 # 3315 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_67 - 209 TIGR01968 TIGR01968 261 3.2e-11 35.2 0.5 1 2 1.9e-10 1.5e-08 26.5 0.3 3 39 2 38 1 42 0.97 # 64354 # 64980 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_67 - 209 TIGR01968 TIGR01968 261 3.2e-11 35.2 0.5 2 2 0.00016 0.012 7.1 0.0 100 134 65 99 60 152 0.83 # 64354 # 64980 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_33 - 313 AAA_18 PF13238.1 129 0.00024 14.0 0.2 1 1 5.7e-06 0.00043 13.1 0.2 1 22 120 141 120 169 0.81 # 33203 # 34141 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_66 - 425 IMS_HHH PF11798.3 32 6.6e-09 28.0 0.0 1 1 3.2e-10 2.5e-08 26.3 0.0 5 32 174 201 170 201 0.92 # 62842 # 64116 # 1 # ID=1_66;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.556 1_60 - 227 Methyltransf_15 PF09445.5 164 0.00052 12.1 0.0 1 2 0.039 3 -0.1 0.0 53 79 4 29 2 33 0.89 # 57739 # 58419 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 1_60 - 227 Methyltransf_15 PF09445.5 164 0.00052 12.1 0.0 2 2 3.8e-05 0.0029 9.7 0.0 3 32 166 195 164 210 0.87 # 57739 # 58419 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 1_13 - 1018 DUF258 PF03193.11 161 0.00037 12.2 0.1 1 1 9.1e-06 0.00069 11.3 0.1 35 56 496 517 489 528 0.82 # 12075 # 15128 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_3 - 734 DUF87 PF01935.12 229 4.6e-05 15.8 0.0 1 1 2.4e-06 9e-05 14.9 0.0 10 39 124 152 114 160 0.80 # 1114 # 3315 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_67 - 209 DUF87 PF01935.12 229 0.00011 14.6 0.5 1 1 5.9e-06 0.00022 13.6 0.1 33 61 11 38 4 41 0.92 # 64354 # 64980 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_22 - 1634 HTH_28 PF13518.1 52 3.2e-05 16.5 0.1 1 1 1.1e-06 8.2e-05 15.1 0.1 4 34 472 502 471 511 0.93 # 20920 # 25821 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.584 1_76 - 66 TIGR01055 TIGR01055 625 5.7e-05 13.8 0.1 1 1 8e-07 6.1e-05 13.7 0.1 324 379 4 59 1 64 0.81 # 71208 # 71405 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_36 - 505 T2SE PF00437.15 272 3.8e-37 120.1 0.0 1 1 2.3e-38 5.7e-37 119.5 0.0 11 253 112 360 104 376 0.88 # 35849 # 37363 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_24 - 386 T2SE PF00437.15 272 2.7e-26 84.5 0.0 1 1 1.5e-27 3.8e-26 84.0 0.0 8 263 25 296 19 307 0.82 # 26139 # 27296 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_33 - 313 T2SE PF00437.15 272 2.5e-19 61.7 0.3 1 1 1.4e-20 3.6e-19 61.2 0.3 126 258 115 253 77 264 0.82 # 33203 # 34141 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_64 - 326 StbA PF06406.6 318 5.9e-127 415.4 0.0 1 1 9.5e-129 7.3e-127 415.1 0.0 2 316 3 319 2 321 0.99 # 61216 # 62193 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_13 - 1018 NACHT PF05729.7 166 9.8e-05 14.6 0.0 1 1 3.4e-06 0.00026 13.2 0.0 2 39 498 531 497 568 0.87 # 12075 # 15128 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_33 - 313 UPF0079 PF02367.12 123 0.00042 12.5 0.1 1 1 1.2e-05 0.0009 11.4 0.1 16 38 118 140 106 170 0.79 # 33203 # 34141 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_67 - 209 AAA_17 PF13207.1 121 2.6e-05 17.6 0.0 1 1 1.4e-06 0.0001 15.6 0.0 9 77 11 83 9 207 0.76 # 64354 # 64980 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_24 - 386 AAA_25 PF13481.1 194 3.9e-05 15.6 0.0 1 1 2.7e-06 6.9e-05 14.8 0.0 25 52 147 174 121 181 0.86 # 26139 # 27296 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_33 - 313 AAA_25 PF13481.1 194 9.4e-05 14.4 0.0 1 1 5.2e-06 0.00013 13.9 0.0 33 65 117 149 98 240 0.86 # 33203 # 34141 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_67 - 209 AAA_25 PF13481.1 194 0.0002 13.3 0.1 1 1 2e-05 0.0005 12.0 0.0 42 85 10 43 3 85 0.84 # 64354 # 64980 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_67 - 209 VirC1 PF07015.6 231 1.1e-12 40.1 0.1 1 1 2.6e-14 2e-12 39.2 0.1 3 196 2 191 1 207 0.76 # 64354 # 64980 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_22 - 1634 CENP-B_N PF04218.8 53 0.00042 12.3 0.0 1 1 1.4e-05 0.0011 11.0 0.0 21 47 479 505 471 506 0.84 # 20920 # 25821 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.584 1_3 - 734 T4SS-DNA_transf PF02534.9 469 3.8e-08 24.8 0.0 1 1 8.7e-10 6.6e-08 24.0 0.0 34 175 124 284 102 571 0.65 # 1114 # 3315 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_67 - 209 APS_kinase PF01583.15 157 0.00048 12.3 0.0 1 1 1.3e-05 0.00099 11.3 0.0 11 41 10 40 1 46 0.84 # 64354 # 64980 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_22 - 1634 TrmB PF01978.14 68 0.00012 14.3 0.0 1 1 4.8e-06 0.00036 12.8 0.0 18 45 476 503 473 505 0.91 # 20920 # 25821 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.584 1_13 - 1018 AAA_10 PF12846.2 304 1.7e-33 108.8 0.0 1 1 1.4e-34 2.7e-33 108.2 0.0 4 303 499 897 497 898 0.90 # 12075 # 15128 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_3 - 734 AAA_10 PF12846.2 304 1.3e-09 30.3 0.1 1 1 1.1e-10 2.1e-09 29.7 0.1 2 297 137 512 136 518 0.74 # 1114 # 3315 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_33 - 313 AAA_10 PF12846.2 304 0.00021 13.3 0.1 1 1 3.1e-05 0.00058 11.8 0.0 3 27 119 143 117 173 0.81 # 33203 # 34141 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_67 - 209 AAA_10 PF12846.2 304 0.00043 12.3 0.0 1 1 3.7e-05 0.0007 11.5 0.0 11 39 11 39 3 61 0.90 # 64354 # 64980 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_15 - 129 HTH_20 PF12840.2 61 0.00072 11.9 0.1 1 1 1.4e-05 0.001 11.4 0.1 7 34 16 49 8 65 0.80 # 15819 # 16205 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.530 1_60 - 227 Methyltransf_11 PF08241.7 95 0.00016 14.7 0.0 1 2 0.0013 0.098 5.8 0.0 77 93 52 68 37 70 0.87 # 57739 # 58419 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 1_60 - 227 Methyltransf_11 PF08241.7 95 0.00016 14.7 0.0 2 2 0.0016 0.12 5.5 0.0 5 45 172 211 168 225 0.75 # 57739 # 58419 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 1_67 - 209 ArsA_ATPase PF02374.10 305 3.9e-08 25.1 0.8 1 3 1.6e-09 1.2e-07 23.5 0.1 3 48 3 48 1 69 0.85 # 64354 # 64980 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_67 - 209 ArsA_ATPase PF02374.10 305 3.9e-08 25.1 0.8 2 3 0.066 5 -1.5 0.0 118 135 66 85 48 86 0.70 # 64354 # 64980 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_67 - 209 ArsA_ATPase PF02374.10 305 3.9e-08 25.1 0.8 3 3 0.049 3.7 -1.1 0.0 204 234 131 161 114 200 0.70 # 64354 # 64980 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_67 - 209 AAA_31 PF13614.1 157 3.3e-07 22.9 0.0 1 2 2.7e-08 2.1e-06 20.3 0.0 2 42 2 42 1 54 0.88 # 64354 # 64980 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_67 - 209 AAA_31 PF13614.1 157 3.3e-07 22.9 0.0 2 2 0.05 3.8 -0.1 0.0 110 127 69 86 63 113 0.72 # 64354 # 64980 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_66 - 425 DNA_pol_lambd_f PF10391.4 52 7.7e-05 14.8 0.0 1 1 3.8e-06 0.00029 12.9 0.0 6 31 184 210 180 218 0.88 # 62842 # 64116 # 1 # ID=1_66;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.556 1_55 - 185 SSB PF00436.20 104 1e-42 136.8 0.3 1 1 1.4e-44 1e-42 136.8 0.3 1 103 6 112 6 113 0.97 # 54175 # 54729 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/31ddfb17-dc20-4b0c-963d-609221448557 # Target file: checkm_output/bins/pm962/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm962/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/31ddfb17-dc20-4b0c-963d-609221448557 checkm_output/bins/pm962/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:19:20 2017 # [ok]