# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_13 - 188 HTH_22 PF13309.1 64 8.8e-05 12.5 0.0 1 2 0.014 0.22 1.7 0.0 27 38 78 89 69 93 0.88 # 9620 # 10183 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.567 1_13 - 188 HTH_22 PF13309.1 64 8.8e-05 12.5 0.0 2 2 0.00013 0.0019 8.3 0.0 47 61 167 181 165 184 0.88 # 9620 # 10183 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.567 1_15 - 593 DUF927 PF06048.6 286 2.2e-55 178.1 0.0 1 1 1.9e-56 2.9e-55 177.7 0.0 4 284 29 319 26 321 0.88 # 11709 # 13487 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_14 - 152 HTH_40 PF14493.1 91 4.9e-07 20.2 0.1 1 1 5.8e-08 8.7e-07 19.4 0.1 5 55 10 60 6 95 0.77 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_14 - 152 HTH_38 PF13936.1 44 2.3e-10 30.2 1.1 1 1 3.5e-11 5.3e-10 29.1 0.2 14 41 12 39 7 41 0.87 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_14 - 152 MarR PF01047.17 59 8.7e-07 18.9 0.0 1 1 1.6e-07 2.4e-06 17.5 0.0 15 40 16 41 12 41 0.91 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_14 - 152 HTH_Tnp_4 PF13613.1 53 0.00011 12.0 0.0 1 1 1.3e-05 0.0002 11.2 0.0 18 40 17 39 15 41 0.93 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_13 - 188 PAX PF00292.13 125 5.3e-05 13.2 0.1 1 2 0.099 1.5 -1.2 0.0 48 78 17 47 6 56 0.75 # 9620 # 10183 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.567 1_13 - 188 PAX PF00292.13 125 5.3e-05 13.2 0.1 2 2 1.4e-05 0.0002 11.3 0.1 15 54 142 183 138 186 0.85 # 9620 # 10183 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.567 1_14 - 152 Sigma70_r4_2 PF08281.7 54 2.5e-08 23.6 0.7 1 2 8.9e-09 1.3e-07 21.3 0.0 23 48 15 40 12 41 0.92 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_14 - 152 Sigma70_r4_2 PF08281.7 54 2.5e-08 23.6 0.7 2 2 0.054 0.81 -0.5 0.4 3 19 72 88 70 92 0.80 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_14 - 152 Terminase_5 PF06056.7 58 4.8e-07 19.6 0.0 1 1 5.7e-08 8.5e-07 18.8 0.0 5 42 10 47 8 60 0.90 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_14 - 152 GerE PF00196.14 58 7.1e-07 18.8 0.0 1 1 8.7e-08 1.3e-06 18.0 0.0 12 36 12 36 5 41 0.83 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_14 - 152 Sigma70_r4 PF04545.11 50 1.3e-07 21.1 0.2 1 2 9.9e-08 1.5e-06 17.8 0.0 17 39 13 37 6 41 0.83 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_14 - 152 Sigma70_r4 PF04545.11 50 1.3e-07 21.1 0.2 2 2 0.038 0.57 -0.1 0.0 8 17 82 91 78 106 0.66 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_14 - 152 HTH_37 PF13744.1 80 8.3e-05 12.7 2.3 1 2 3.1e-05 0.00047 10.3 0.1 25 53 12 40 7 58 0.81 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_14 - 152 HTH_37 PF13744.1 80 8.3e-05 12.7 2.3 2 2 0.011 0.16 2.1 0.2 2 39 62 104 61 110 0.77 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_14 - 152 HTH_3 PF01381.17 55 1.3e-07 21.7 0.1 1 1 2.1e-08 3.1e-07 20.5 0.1 4 34 13 43 10 49 0.84 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_14 - 152 HTH_23 PF13384.1 50 4.3e-10 29.3 0.1 1 1 1.7e-10 1.3e-09 27.8 0.1 12 40 13 41 7 45 0.84 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_13 - 188 HTH_23 PF13384.1 50 3.9e-07 19.9 0.0 1 1 2e-07 1.5e-06 18.1 0.0 4 39 149 184 146 186 0.90 # 9620 # 10183 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.567 1_13 - 188 HTH_7 PF02796.10 45 1.2e-08 25.0 0.0 1 1 4.3e-09 3.2e-08 23.7 0.0 1 44 142 185 142 186 0.93 # 9620 # 10183 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.567 1_14 - 152 HTH_7 PF02796.10 45 7.5e-06 16.1 0.0 1 1 2e-06 1.5e-05 15.1 0.0 13 44 10 41 2 42 0.88 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_14 - 152 HTH_19 PF12844.2 64 2e-05 14.9 1.7 1 2 8e-06 0.00012 12.4 0.1 7 36 13 42 11 57 0.83 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_14 - 152 HTH_19 PF12844.2 64 2e-05 14.9 1.7 2 2 0.018 0.28 1.6 0.3 2 17 71 86 70 99 0.82 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_14 - 152 HTH_29 PF13551.1 112 3.9e-07 20.5 1.0 1 1 9.7e-08 7.3e-07 19.6 1.0 4 77 11 83 9 150 0.78 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_13 - 188 HTH_29 PF13551.1 112 3e-05 14.5 0.2 1 2 0.0082 0.061 3.8 0.1 37 68 127 157 120 160 0.85 # 9620 # 10183 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.567 1_13 - 188 HTH_29 PF13551.1 112 3e-05 14.5 0.2 2 2 2.8e-05 0.00021 11.7 0.1 1 34 152 184 152 187 0.93 # 9620 # 10183 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.567 1_14 - 152 HTH_28 PF13518.1 52 1.9e-07 21.3 0.1 1 1 3e-08 4.5e-07 20.1 0.1 10 34 16 40 7 41 0.84 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_14 - 152 HTH_Tnp_1_2 PF13022.1 142 2.9e-05 14.1 0.0 1 1 3.8e-06 5.7e-05 13.2 0.0 34 63 18 45 9 64 0.78 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_14 - 152 HTH_24 PF13412.1 48 2.4e-05 14.0 0.0 1 1 4.6e-06 6.9e-05 12.5 0.0 12 35 14 36 12 37 0.84 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_14 - 152 HTH_31 PF13560.1 64 2.5e-05 14.7 0.1 1 2 1.7e-06 2.5e-05 14.7 0.1 7 40 12 44 7 56 0.79 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_14 - 152 HTH_31 PF13560.1 64 2.5e-05 14.7 0.1 2 2 0.093 1.4 -0.5 0.4 3 13 70 80 70 90 0.76 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_14 - 152 HTH_36 PF13730.1 55 0.00014 12.3 0.0 1 1 2.1e-05 0.00031 11.2 0.0 29 47 22 40 13 41 0.91 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_14 - 152 HTH_26 PF13443.1 63 5.2e-05 13.7 0.1 1 1 7.1e-06 0.00011 12.7 0.1 5 44 13 52 11 56 0.79 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_14 - 152 HTH_17 PF12728.2 51 3.7e-05 14.3 0.0 1 1 6e-06 9e-05 13.0 0.0 2 29 19 46 18 56 0.89 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_13 - 188 HTH_11 PF08279.7 55 8.3e-07 18.9 0.2 1 2 0.054 0.4 0.7 0.0 36 51 81 96 79 98 0.86 # 9620 # 10183 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.567 1_13 - 188 HTH_11 PF08279.7 55 8.3e-07 18.9 0.2 2 2 1.3e-06 9.5e-06 15.5 0.1 7 35 153 182 150 185 0.86 # 9620 # 10183 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.567 1_14 - 152 HTH_11 PF08279.7 55 1.5e-05 14.9 0.1 1 1 1.1e-05 8.1e-05 12.6 0.0 11 34 15 37 7 41 0.80 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_14 - 152 Phage_terminase PF10668.4 60 7.3e-06 16.0 0.0 1 1 8.1e-07 1.2e-05 15.3 0.0 23 53 19 49 1 52 0.74 # 10714 # 11169 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/f5c18cd2-8db3-49db-b34d-c944853bb591 # Target file: checkm_output/bins/pm959/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm959/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f5c18cd2-8db3-49db-b34d-c944853bb591 checkm_output/bins/pm959/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:19:08 2017 # [ok]