# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 23 HTH_22 PF13309.1 64 2.6e-06 15.9 0.1 1 1 5.1e-07 2.6e-06 15.9 0.1 42 61 3 22 1 23 0.91 # 1 # 69 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_1 - 23 HTH_AsnC-type PF13404.1 42 8e-06 14.1 0.1 1 1 1.8e-06 8.9e-06 14.0 0.1 16 35 2 21 2 22 0.93 # 1 # 69 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_1 - 23 HTH_8 PF02954.14 42 3.2e-07 18.6 0.0 1 1 6.9e-08 3.4e-07 18.5 0.0 18 37 3 22 2 23 0.89 # 1 # 69 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_1 - 23 TetR_N PF00440.18 47 5.3e-06 14.8 0.0 1 1 1.1e-06 5.3e-06 14.8 0.0 14 35 1 22 1 23 0.93 # 1 # 69 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_1 - 23 NUMOD1 PF07453.8 37 8e-08 20.8 0.0 1 1 1.6e-08 8.1e-08 20.8 0.0 18 35 5 22 4 23 0.95 # 1 # 69 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_1 - 23 HTH_23 PF13384.1 50 3.2e-07 18.7 0.0 1 1 6.4e-08 3.2e-07 18.7 0.0 17 36 3 22 1 23 0.90 # 1 # 69 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_1 - 23 HTH_7 PF02796.10 45 9e-07 17.5 0.1 1 1 1.8e-07 9e-07 17.5 0.1 23 40 5 22 2 23 0.94 # 1 # 69 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_1 - 23 HTH_29 PF13551.1 112 1.3e-05 14.1 0.1 1 1 2.6e-06 1.3e-05 14.1 0.1 12 31 4 22 1 23 0.88 # 1 # 69 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_1 - 23 HTH_28 PF13518.1 52 4.2e-07 18.7 0.0 1 1 8.8e-08 4.4e-07 18.6 0.0 13 31 4 22 2 23 0.92 # 1 # 69 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_1 - 23 HTH_6 PF01418.12 77 3.4e-05 12.3 0.1 1 1 6.7e-06 3.4e-05 12.3 0.1 34 54 3 23 1 23 0.91 # 1 # 69 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_1 - 23 MerR PF00376.18 38 1.4e-05 13.4 0.0 1 1 3.1e-06 1.5e-05 13.3 0.0 1 16 5 20 5 22 0.93 # 1 # 69 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_1 - 23 HTH_17 PF12728.2 51 6.2e-08 21.6 0.0 1 1 1.2e-08 6.2e-08 21.6 0.0 3 21 5 23 3 23 0.94 # 1 # 69 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/0a646b6b-09da-4565-8f4a-f294e880269a # Target file: checkm_output/bins/pm958/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm958/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/0a646b6b-09da-4565-8f4a-f294e880269a checkm_output/bins/pm958/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:19:06 2017 # [ok]