# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_20 - 388 KaiC PF06745.8 227 0.00075 11.4 0.0 1 1 1.5e-05 0.0013 10.6 0.0 14 59 147 191 137 201 0.76 # 20176 # 21339 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_77 - 92 Zn_Tnp_IS1 PF03811.8 36 3.1e-22 70.6 2.2 1 1 6.8e-24 6.1e-22 69.7 2.2 1 36 1 36 1 36 0.99 # 54640 # 54915 # 1 # ID=1_77;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_75 - 304 HTH_IclR PF09339.5 52 1.7e-05 17.2 0.3 1 3 3.4e-06 0.0003 13.1 0.1 17 45 15 43 5 52 0.81 # 52411 # 53322 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.481 1_75 - 304 HTH_IclR PF09339.5 52 1.7e-05 17.2 0.3 2 3 0.047 4.2 -0.1 0.0 10 25 47 62 46 65 0.85 # 52411 # 53322 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.481 1_75 - 304 HTH_IclR PF09339.5 52 1.7e-05 17.2 0.3 3 3 0.051 4.6 -0.2 0.0 12 30 172 190 170 194 0.80 # 52411 # 53322 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.481 1_20 - 388 ABC_tran PF00005.22 137 0.00013 15.1 0.0 1 1 2.7e-06 0.00024 14.2 0.0 16 33 157 174 149 217 0.83 # 20176 # 21339 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_20 - 388 FtsK_SpoIIIE PF01580.13 205 8.9e-05 14.8 0.0 1 1 1.9e-06 0.00017 13.8 0.0 41 59 155 173 129 184 0.85 # 20176 # 21339 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_20 - 388 MobB PF03205.9 140 0.00045 12.7 0.0 1 1 1e-05 0.00093 11.7 0.0 4 25 156 177 154 190 0.85 # 20176 # 21339 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_58 - 83 HTH_8 PF02954.14 42 9.1e-06 18.0 0.1 1 1 1.8e-07 1.6e-05 17.2 0.1 18 36 14 32 13 33 0.92 # 41726 # 41974 # -1 # ID=1_58;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_7 - 1017 AAA_19 PF13245.1 76 0.00045 12.8 0.0 1 1 1.6e-05 0.0015 11.1 0.0 14 31 492 508 481 518 0.90 # 7186 # 10236 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_89 - 235 rve PF00665.21 120 2.9e-13 42.7 0.1 1 2 0.015 1.3 1.9 0.0 78 102 27 49 6 54 0.84 # 64149 # 64853 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_89 - 235 rve PF00665.21 120 2.9e-13 42.7 0.1 2 2 6.1e-14 5.5e-12 38.7 0.0 9 119 75 182 70 183 0.89 # 64149 # 64853 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_20 - 388 AAA_23 PF13476.1 202 1.8e-06 21.2 0.1 1 1 4.2e-08 3.7e-06 20.1 0.0 19 44 152 177 140 226 0.87 # 20176 # 21339 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_20 - 388 SMC_N PF02463.14 220 0.0011 11.0 0.0 1 1 2.1e-05 0.0019 10.2 0.0 26 50 154 178 147 195 0.81 # 20176 # 21339 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_88 - 170 HTH_Tnp_1 PF01527.15 76 8.6e-05 15.3 0.1 1 1 6.6e-06 0.0003 13.5 0.1 10 48 124 165 122 168 0.76 # 62997 # 63506 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.524 1_89 - 235 HTH_Tnp_1 PF01527.15 76 0.00022 13.9 0.3 1 1 1.1e-05 0.00048 12.9 0.3 4 51 6 58 4 63 0.79 # 64149 # 64853 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_87 - 696 TraG-D_C PF12696.2 128 0.00012 14.7 0.1 1 1 2.4e-06 0.00021 13.9 0.1 3 94 437 524 435 556 0.78 # 60862 # 62949 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_89 - 235 DDE_3 PF13358.1 146 0.00062 12.3 0.0 1 1 2.1e-05 0.0019 10.7 0.0 32 90 82 141 59 146 0.87 # 64149 # 64853 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_74 - 403 DDE_Tnp_1 PF01609.16 213 1.8e-28 92.3 0.0 1 1 5.5e-30 2.5e-28 91.8 0.0 3 212 90 330 88 331 0.93 # 50900 # 52108 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_79 - 213 DDE_Tnp_1 PF01609.16 213 4.4e-08 25.6 0.0 1 1 3.4e-09 1.5e-07 23.9 0.0 6 82 128 211 123 212 0.85 # 55348 # 55986 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.333 1_64 - 396 ACT PF01842.20 66 4.6e-05 15.7 0.4 1 3 0.038 3.4 0.1 0.0 13 27 203 217 203 217 0.90 # 45441 # 46628 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.601 1_64 - 396 ACT PF01842.20 66 4.6e-05 15.7 0.4 2 3 1.7e-05 0.0015 10.8 0.1 7 27 290 310 287 310 0.93 # 45441 # 46628 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.601 1_64 - 396 ACT PF01842.20 66 4.6e-05 15.7 0.4 3 3 0.076 6.8 -0.9 0.0 30 59 336 363 334 365 0.74 # 45441 # 46628 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.601 1_58 - 83 HTH_37 PF13744.1 80 3.9e-05 16.2 0.0 1 1 1.8e-06 7.9e-05 15.2 0.0 24 54 7 37 4 46 0.89 # 41726 # 41974 # -1 # ID=1_58;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_65 - 91 HTH_37 PF13744.1 80 0.00077 12.1 0.0 1 1 2.4e-05 0.0011 11.6 0.0 25 53 22 50 19 54 0.92 # 46647 # 46919 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 1_52 - 325 Hydantoinase_A PF01968.13 290 1.8e-07 23.3 4.4 1 2 5e-07 4.5e-05 15.4 0.1 68 96 159 186 146 196 0.82 # 38458 # 39432 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_52 - 325 Hydantoinase_A PF01968.13 290 1.8e-07 23.3 4.4 2 2 3.6e-05 0.0033 9.3 0.2 213 265 249 301 200 322 0.77 # 38458 # 39432 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_20 - 388 AAA_16 PF13191.1 185 0.00079 12.2 0.0 1 1 1.8e-05 0.0016 11.2 0.0 26 50 154 178 140 211 0.85 # 20176 # 21339 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_20 - 388 AAA_22 PF13401.1 131 2.6e-06 20.4 0.0 1 1 1.4e-07 6.4e-06 19.1 0.0 4 30 152 178 149 243 0.84 # 20176 # 21339 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_7 - 1017 AAA_22 PF13401.1 131 0.00018 14.5 0.0 1 1 1.3e-05 0.0006 12.7 0.0 8 73 492 561 486 594 0.70 # 7186 # 10236 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_39 - 287 Methyltransf_27 PF13708.1 194 1.8e-69 225.9 0.0 1 1 3.3e-71 2.9e-69 225.2 0.0 2 194 89 282 88 282 0.98 # 31205 # 32065 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_20 - 388 AAA_29 PF13555.1 62 8e-06 18.1 0.1 1 1 2.2e-07 2e-05 16.9 0.1 26 43 155 172 147 175 0.84 # 20176 # 21339 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_75 - 304 HTH_1 PF00126.22 60 1.9e-19 62.0 0.7 1 1 3.7e-21 3.3e-19 61.2 0.7 2 59 5 62 4 63 0.96 # 52411 # 53322 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.481 1_88 - 170 Limkain-b1 PF11608.3 91 0.00042 12.8 0.1 1 1 8.7e-06 0.00078 12.0 0.1 16 70 90 144 80 151 0.89 # 62997 # 63506 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.524 1_89 - 235 HTH_32 PF13565.1 77 1.2e-06 22.1 0.2 1 1 5.6e-08 5.1e-06 20.0 0.0 26 76 5 50 2 51 0.83 # 64149 # 64853 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_58 - 83 HTH_3 PF01381.17 55 1.7e-09 30.2 0.1 1 1 1.2e-10 2.8e-09 29.5 0.1 4 45 9 50 6 56 0.86 # 41726 # 41974 # -1 # ID=1_58;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_42 - 89 HTH_3 PF01381.17 55 1e-06 21.4 0.0 1 1 5.6e-08 1.3e-06 21.0 0.0 8 36 41 69 33 78 0.88 # 34270 # 34536 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.577 1_65 - 91 HTH_3 PF01381.17 55 5.7e-05 15.7 0.0 1 1 3.6e-06 8.2e-05 15.2 0.0 2 32 21 51 21 55 0.90 # 46647 # 46919 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 1_47 - 160 HTH_3 PF01381.17 55 0.00013 14.6 0.1 1 2 0.0029 0.065 5.9 0.0 2 20 15 33 14 37 0.91 # 36356 # 36835 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_47 - 160 HTH_3 PF01381.17 55 0.00013 14.6 0.1 2 2 0.0022 0.049 6.3 0.0 1 23 96 118 96 120 0.89 # 36356 # 36835 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_79 - 213 DDE_Tnp_1_4 PF13701.1 449 8.4e-10 30.0 0.1 1 3 0.0019 0.17 2.7 0.1 11 42 5 36 3 64 0.72 # 55348 # 55986 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.333 1_79 - 213 DDE_Tnp_1_4 PF13701.1 449 8.4e-10 30.0 0.1 2 3 0.019 1.7 -0.6 0.0 352 376 34 58 24 78 0.85 # 55348 # 55986 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.333 1_79 - 213 DDE_Tnp_1_4 PF13701.1 449 8.4e-10 30.0 0.1 3 3 2.5e-10 2.3e-08 25.3 0.0 138 225 123 211 70 212 0.82 # 55348 # 55986 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.333 1_89 - 235 HTH_23 PF13384.1 50 5.5e-06 18.8 0.7 1 2 0.095 1.4 1.6 0.0 7 27 11 35 7 36 0.69 # 64149 # 64853 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_89 - 235 HTH_23 PF13384.1 50 5.5e-06 18.8 0.7 2 2 1.1e-05 0.00017 14.0 0.1 28 42 41 55 40 62 0.87 # 64149 # 64853 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_42 - 89 HTH_23 PF13384.1 50 6.3e-06 18.6 0.0 1 1 6.4e-07 9.6e-06 18.0 0.0 16 39 38 64 33 68 0.83 # 34270 # 34536 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.577 1_65 - 91 HTH_23 PF13384.1 50 7.3e-06 18.4 0.1 1 1 8e-07 1.2e-05 17.7 0.1 12 38 23 49 19 54 0.85 # 46647 # 46919 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 1_88 - 170 HTH_23 PF13384.1 50 1.4e-05 17.4 0.1 1 1 2.2e-06 3.3e-05 16.3 0.1 4 40 123 163 121 167 0.91 # 62997 # 63506 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.524 1_77 - 92 HTH_23 PF13384.1 50 2e-05 17.0 0.0 1 1 2.2e-06 3.3e-05 16.3 0.0 7 40 53 86 51 90 0.93 # 54640 # 54915 # 1 # ID=1_77;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_58 - 83 HTH_23 PF13384.1 50 4e-05 16.0 0.0 1 1 5.2e-06 7.9e-05 15.1 0.0 15 34 10 31 6 40 0.81 # 41726 # 41974 # -1 # ID=1_58;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_58 - 83 HTH_19 PF12844.2 64 3.6e-08 26.2 0.0 1 1 1.7e-09 5.2e-08 25.7 0.0 8 45 10 47 8 56 0.86 # 41726 # 41974 # -1 # ID=1_58;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_65 - 91 HTH_19 PF12844.2 64 7.8e-06 18.7 0.0 1 1 3.4e-07 1e-05 18.3 0.0 5 35 21 51 21 66 0.92 # 46647 # 46919 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 1_42 - 89 HTH_19 PF12844.2 64 7.6e-05 15.5 0.0 1 1 3.4e-06 0.0001 15.1 0.0 4 39 33 69 30 73 0.85 # 34270 # 34536 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.577 1_89 - 235 DDE_Tnp_IS66 PF03050.9 271 2.1e-12 39.5 0.3 1 1 3e-14 2.7e-12 39.2 0.3 5 132 10 144 6 174 0.87 # 64149 # 64853 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_87 - 696 TrwB_AAD_bind PF10412.4 386 1.7e-06 19.6 0.9 1 3 1.7e-05 0.0015 9.8 0.0 16 36 134 154 125 158 0.88 # 60862 # 62949 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_87 - 696 TrwB_AAD_bind PF10412.4 386 1.7e-06 19.6 0.9 2 3 9.3e-05 0.0084 7.4 0.1 93 140 235 281 229 303 0.80 # 60862 # 62949 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_87 - 696 TrwB_AAD_bind PF10412.4 386 1.7e-06 19.6 0.9 3 3 0.083 7.4 -2.3 0.0 293 323 482 512 405 546 0.58 # 60862 # 62949 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_7 - 1017 AAA_18 PF13238.1 129 7.6e-05 15.8 1.3 1 1 3.5e-06 0.00032 13.8 0.0 2 19 492 509 492 571 0.76 # 7186 # 10236 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_69 - 435 IMS_HHH PF11798.3 32 0.00045 13.1 0.0 1 1 1.5e-05 0.0013 11.6 0.0 12 32 192 212 182 212 0.83 # 48197 # 49501 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_77 - 92 HTH_Tnp_IS1 PF12759.2 46 1.8e-31 100.1 0.2 1 1 3.2e-33 2.9e-31 99.5 0.2 1 46 43 88 43 88 0.99 # 54640 # 54915 # 1 # ID=1_77;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_20 - 388 DUF87 PF01935.12 229 8.2e-05 15.2 0.0 1 1 1.8e-06 0.00016 14.2 0.0 28 45 157 174 155 188 0.89 # 20176 # 21339 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_88 - 170 HTH_28 PF13518.1 52 2.6e-06 20.2 0.5 1 1 2.9e-07 5.3e-06 19.2 0.1 2 37 126 165 125 167 0.90 # 62997 # 63506 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.524 1_89 - 235 HTH_28 PF13518.1 52 5.2e-05 16.0 1.2 1 1 1.3e-05 0.00023 14.0 1.2 22 36 40 54 13 55 0.76 # 64149 # 64853 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_42 - 89 HTH_28 PF13518.1 52 5.6e-05 15.9 0.0 1 1 4.3e-06 7.8e-05 15.4 0.0 7 34 34 64 33 68 0.82 # 34270 # 34536 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.577 1_77 - 92 HTH_28 PF13518.1 52 8e-05 15.4 0.0 1 1 6.7e-06 0.00012 14.8 0.0 4 35 55 86 53 90 0.90 # 54640 # 54915 # 1 # ID=1_77;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_58 - 83 HTH_28 PF13518.1 52 0.00038 13.3 0.1 1 1 4.5e-05 0.00082 12.2 0.1 8 29 8 31 6 35 0.78 # 41726 # 41974 # -1 # ID=1_58;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_20 - 388 Miro PF08477.8 119 0.00086 12.6 0.0 1 1 2.1e-05 0.0019 11.5 0.0 4 28 157 186 156 220 0.72 # 20176 # 21339 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_58 - 83 HTH_31 PF13560.1 64 1.7e-09 30.6 0.9 1 1 9.9e-11 2.2e-09 30.2 0.9 9 56 9 55 6 72 0.90 # 41726 # 41974 # -1 # ID=1_58;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_65 - 91 HTH_31 PF13560.1 64 2.6e-07 23.6 0.4 1 1 1.8e-08 4.1e-07 22.9 0.3 7 36 21 50 17 65 0.89 # 46647 # 46919 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 1_47 - 160 HTH_31 PF13560.1 64 6.1e-07 22.4 1.2 1 2 0.0047 0.1 5.6 0.0 6 33 14 41 12 48 0.88 # 36356 # 36835 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_47 - 160 HTH_31 PF13560.1 64 6.1e-07 22.4 1.2 2 2 3.7e-06 8.3e-05 15.6 0.3 4 39 94 129 91 135 0.88 # 36356 # 36835 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_42 - 89 HTH_31 PF13560.1 64 1.8e-06 20.9 0.0 1 1 1.1e-07 2.5e-06 20.4 0.0 2 42 29 69 28 80 0.84 # 34270 # 34536 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.577 1_7 - 1017 DUF2075 PF09848.4 352 0.00029 12.6 0.0 1 1 1.1e-05 0.00099 10.8 0.0 5 22 492 509 489 537 0.87 # 7186 # 10236 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_20 - 388 T2SE PF00437.15 272 2.6e-23 75.0 0.0 1 1 4.6e-25 4.2e-23 74.3 0.0 11 269 24 303 15 306 0.78 # 20176 # 21339 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_52 - 325 StbA PF06406.6 318 1e-156 513.5 0.2 1 1 1.3e-158 1.1e-156 513.3 0.2 1 318 1 322 1 322 0.99 # 38458 # 39432 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_20 - 388 NACHT PF05729.7 166 0.0003 13.2 0.0 1 1 6.6e-06 0.0006 12.3 0.0 4 29 156 181 154 188 0.83 # 20176 # 21339 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_7 - 1017 AAA_17 PF13207.1 121 4.5e-05 17.1 0.1 1 1 4.3e-06 0.00038 14.0 0.0 3 27 492 522 492 581 0.72 # 7186 # 10236 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_20 - 388 AAA_25 PF13481.1 194 5.2e-06 18.7 0.0 1 1 1.3e-07 1.2e-05 17.6 0.0 24 53 143 172 120 178 0.86 # 20176 # 21339 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_52 - 325 Hydant_A_N PF05378.8 176 0.00088 11.6 3.6 1 4 0.096 8.7 -1.5 0.0 1 18 2 19 2 31 0.77 # 38458 # 39432 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_52 - 325 Hydant_A_N PF05378.8 176 0.00088 11.6 3.6 2 4 0.049 4.4 -0.5 0.0 108 154 38 86 16 105 0.67 # 38458 # 39432 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_52 - 325 Hydant_A_N PF05378.8 176 0.00088 11.6 3.6 3 4 0.071 6.4 -1.0 0.0 95 127 113 145 83 153 0.71 # 38458 # 39432 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_52 - 325 Hydant_A_N PF05378.8 176 0.00088 11.6 3.6 4 4 3.6e-05 0.0033 9.7 0.2 2 51 170 217 169 226 0.82 # 38458 # 39432 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_42 - 89 HTH_Tnp_ISL3 PF13542.1 52 0.00033 12.6 0.0 1 1 5e-06 0.00045 12.2 0.0 19 49 35 64 33 65 0.91 # 34270 # 34536 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.577 1_42 - 89 CENP-B_N PF04218.8 53 0.0013 11.0 0.0 1 1 1.9e-05 0.0017 10.6 0.0 24 49 44 69 34 72 0.88 # 34270 # 34536 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.577 1_20 - 388 Ribosomal_S5 PF00333.15 67 2.7e-05 16.7 0.1 1 2 0.00091 0.082 5.5 0.0 26 45 84 103 76 114 0.83 # 20176 # 21339 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_20 - 388 Ribosomal_S5 PF00333.15 67 2.7e-05 16.7 0.1 2 2 0.00012 0.01 8.4 0.0 21 54 242 274 230 278 0.91 # 20176 # 21339 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_20 - 388 RNA_helicase PF00910.17 107 0.001 12.1 0.0 1 1 2.5e-05 0.0022 10.9 0.0 3 26 157 180 156 197 0.81 # 20176 # 21339 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_78 - 126 DDE_Tnp_IS1 PF03400.8 131 3e-76 246.5 1.5 1 1 3.7e-78 3.4e-76 246.4 1.5 7 131 1 125 1 125 1.00 # 54960 # 55337 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 1_65 - 91 Mor PF08765.6 108 0.00067 12.2 0.0 1 1 9.2e-06 0.00082 11.9 0.0 71 93 27 49 18 57 0.85 # 46647 # 46919 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 1_42 - 89 Phage_CII PF05269.6 91 0.00065 12.5 0.0 1 1 9.2e-06 0.00083 12.2 0.0 17 45 36 64 32 81 0.83 # 34270 # 34536 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.577 1_20 - 388 ATP_bind_1 PF03029.12 238 0.00073 11.8 0.0 1 1 1.3e-05 0.0012 11.2 0.0 1 25 157 181 157 191 0.84 # 20176 # 21339 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_89 - 235 DDE_Tnp_IS240 PF13610.1 140 6.8e-53 171.2 0.0 1 1 2.1e-54 9.5e-53 170.7 0.0 4 139 75 212 73 213 0.99 # 64149 # 64853 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_16 - 66 DDE_Tnp_IS240 PF13610.1 140 0.00024 13.9 0.0 1 1 5.6e-06 0.00025 13.8 0.0 29 64 18 52 5 58 0.83 # 16148 # 16345 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 1_65 - 91 HTH_26 PF13443.1 63 0.0001 15.3 0.0 1 1 3.3e-06 0.00015 14.8 0.0 4 34 22 52 21 56 0.91 # 46647 # 46919 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 1_42 - 89 HTH_26 PF13443.1 63 0.00024 14.1 0.0 1 1 7.2e-06 0.00032 13.7 0.0 11 47 43 78 33 82 0.90 # 34270 # 34536 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.577 1_75 - 304 MarR_2 PF12802.2 62 0.00011 14.6 0.1 1 1 8e-06 0.00072 12.0 0.1 25 48 20 43 8 52 0.89 # 52411 # 53322 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.481 1_42 - 89 HTH_Crp_2 PF13545.1 76 0.00041 12.9 0.0 1 1 6.6e-06 0.00059 12.4 0.0 26 50 40 64 32 65 0.88 # 34270 # 34536 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.577 1_7 - 1017 AAA_10 PF12846.2 304 7.8e-41 133.1 0.0 1 1 5.5e-42 1.6e-40 132.1 0.0 5 297 492 884 489 889 0.91 # 7186 # 10236 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_87 - 696 AAA_10 PF12846.2 304 5.7e-10 31.8 0.0 1 1 2.8e-11 8.4e-10 31.2 0.0 2 292 134 503 133 514 0.76 # 60862 # 62949 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_20 - 388 AAA_10 PF12846.2 304 1.3e-06 20.8 0.0 1 1 2.5e-07 7.4e-06 18.3 0.0 3 27 154 178 152 196 0.74 # 20176 # 21339 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_29 - 145 SSB PF00436.20 104 3e-32 103.4 0.2 1 1 3.8e-34 3.4e-32 103.2 0.2 2 103 7 111 6 112 0.96 # 27103 # 27537 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_20 - 388 GTP_EFTU PF00009.22 188 0.00096 11.4 0.0 1 1 2e-05 0.0018 10.5 0.0 8 34 157 183 155 195 0.87 # 20176 # 21339 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/4b93a2e0-7e49-4548-92e6-0c5dd8c4a84b # Target file: checkm_output/bins/pm954/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm954/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4b93a2e0-7e49-4548-92e6-0c5dd8c4a84b checkm_output/bins/pm954/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:19:07 2017 # [ok]