# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 143 HTH_41 PF14502.1 48 1.5e-06 17.1 0.0 1 1 3.1e-07 2.5e-06 16.5 0.0 9 34 60 85 58 88 0.89 # 3704 # 4132 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 1_6 - 143 HTH_DeoR PF08220.7 57 1.7e-05 13.8 0.0 1 1 4.7e-06 3.7e-05 12.6 0.0 16 46 59 89 46 90 0.89 # 3704 # 4132 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 1_6 - 143 MarR PF01047.17 59 1.5e-08 23.7 0.0 1 1 5.5e-09 4.4e-08 22.2 0.0 11 57 51 98 47 99 0.88 # 3704 # 4132 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 1_6 - 143 HTH_Tnp_4 PF13613.1 53 1.3e-05 14.1 0.2 1 1 3.5e-06 2.8e-05 13.0 0.0 19 45 57 83 57 89 0.91 # 3704 # 4132 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 1_6 - 143 Fe_dep_repress PF01325.14 60 8.9e-08 21.4 0.0 1 2 2.3e-06 1.8e-05 14.0 0.0 23 56 58 91 49 94 0.87 # 3704 # 4132 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 1_6 - 143 Fe_dep_repress PF01325.14 60 8.9e-08 21.4 0.0 2 2 0.0013 0.01 5.2 0.0 26 45 108 127 100 131 0.85 # 3704 # 4132 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 1_6 - 143 GntR PF00392.16 64 7.4e-08 21.2 0.0 1 1 1.4e-08 1.1e-07 20.6 0.0 25 56 58 89 56 93 0.92 # 3704 # 4132 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 1_6 - 143 HTH_23 PF13384.1 50 2.6e-05 13.3 0.1 1 1 8.8e-06 7e-05 11.9 0.0 23 41 63 81 59 88 0.83 # 3704 # 4132 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 1_6 - 143 HTH_28 PF13518.1 52 8.7e-06 15.1 0.2 1 1 3.2e-06 2.6e-05 13.6 0.0 14 42 59 84 46 95 0.79 # 3704 # 4132 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 1_6 - 143 HTH_24 PF13412.1 48 2.8e-06 16.1 0.0 1 1 6.9e-07 5.6e-06 15.1 0.0 16 47 56 87 52 88 0.89 # 3704 # 4132 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 1_6 - 143 HTH_36 PF13730.1 55 3.9e-11 32.4 0.0 1 1 7.4e-12 6e-11 31.8 0.0 1 55 32 87 32 87 0.90 # 3704 # 4132 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 1_6 - 143 HTH_Tnp_ISL3 PF13542.1 52 3.7e-06 15.5 0.0 1 1 8.8e-07 7.1e-06 14.6 0.0 28 50 58 80 56 81 0.91 # 3704 # 4132 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 1_6 - 143 HTH_11 PF08279.7 55 8.6e-08 21.2 0.0 1 1 1.9e-08 1.5e-07 20.4 0.0 17 43 59 85 43 92 0.86 # 3704 # 4132 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 1_6 - 143 MarR_2 PF12802.2 62 7.1e-07 18.3 0.0 1 1 2.6e-07 2.1e-06 16.8 0.0 23 61 59 98 50 99 0.83 # 3704 # 4132 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 1_6 - 143 TrmB PF01978.14 68 4.8e-05 12.5 0.0 1 1 1.1e-05 9.1e-05 11.6 0.0 26 58 61 93 57 111 0.83 # 3704 # 4132 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 1_6 - 143 LacI PF00356.16 46 1.7e-05 13.8 0.1 1 1 5.5e-06 4.4e-05 12.5 0.1 2 23 60 81 59 85 0.86 # 3704 # 4132 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 1_6 - 143 HTH_Crp_2 PF13545.1 76 3.7e-07 19.3 0.0 1 1 6.5e-08 5.2e-07 18.8 0.0 30 60 59 94 56 113 0.76 # 3704 # 4132 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.424 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/1b8cb51c-7fc1-45ee-bb2f-969cd1b01c22 # Target file: checkm_output/bins/pm943/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm943/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1b8cb51c-7fc1-45ee-bb2f-969cd1b01c22 checkm_output/bins/pm943/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:18:45 2017 # [ok]