# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 93 HTH_AsnC-type PF13404.1 42 3.9e-05 12.4 0.0 1 1 1.2e-05 8.6e-05 11.3 0.0 18 36 24 42 23 44 0.90 # 2 # 280 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_1 - 93 HTH_38 PF13936.1 44 5.3e-06 15.2 0.1 1 1 3.2e-06 2.3e-05 13.2 0.0 23 41 26 44 14 45 0.85 # 2 # 280 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_1 - 93 MarR PF01047.17 59 1.7e-06 16.9 0.0 1 1 4.2e-07 3e-06 16.1 0.0 18 39 24 45 17 46 0.84 # 2 # 280 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_1 - 93 Sigma54_DBD PF04552.8 160 2.2e-06 16.4 0.0 1 1 3.5e-07 2.4e-06 16.3 0.0 45 83 17 57 9 93 0.66 # 2 # 280 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_1 - 93 Phage_CI_repr PF07022.8 66 6.2e-05 12.3 0.0 1 1 1.2e-05 8.7e-05 11.8 0.0 10 52 22 63 14 77 0.75 # 2 # 280 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_1 - 93 HTH_AraC PF00165.18 42 1.7e-05 13.8 0.0 1 2 2.4e-05 0.00017 10.7 0.0 13 28 28 43 27 51 0.94 # 2 # 280 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_1 - 93 HTH_AraC PF00165.18 42 1.7e-05 13.8 0.0 2 2 0.033 0.23 0.7 0.0 29 41 58 70 55 71 0.85 # 2 # 280 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_4 - 71 A2L_zn_ribbon PF08792.5 33 3.5e-05 12.5 6.1 1 2 6.5e-05 0.00045 8.9 0.4 6 19 25 38 21 43 0.88 # 1406 # 1618 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.376 1_4 - 71 A2L_zn_ribbon PF08792.5 33 3.5e-05 12.5 6.1 2 2 0.00041 0.0029 6.4 0.8 23 30 52 59 49 61 0.85 # 1406 # 1618 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.376 1_1 - 93 HTH_3 PF01381.17 55 4.9e-16 47.6 0.0 1 1 1.1e-16 7.4e-16 47.0 0.0 4 53 18 67 15 69 0.93 # 2 # 280 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_1 - 93 HTH_23 PF13384.1 50 3.1e-06 16.0 0.0 1 1 1.4e-06 1e-05 14.4 0.0 18 39 24 45 14 47 0.84 # 2 # 280 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_1 - 93 HTH_7 PF02796.10 45 1.2e-05 14.4 0.0 1 1 2.7e-06 1.9e-05 13.7 0.0 14 43 14 45 10 47 0.90 # 2 # 280 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_1 - 93 HTH_19 PF12844.2 64 1e-11 34.0 0.0 1 1 1.8e-12 1.2e-11 33.7 0.0 14 60 25 71 13 75 0.87 # 2 # 280 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_1 - 93 HTH_24 PF13412.1 48 2.7e-06 15.9 0.0 1 1 7.7e-07 5.4e-06 15.0 0.0 18 39 24 45 14 45 0.89 # 2 # 280 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_1 - 93 HTH_18 PF12833.2 81 3.5e-06 16.3 0.0 1 2 3e-06 2.1e-05 13.8 0.0 1 29 29 57 29 62 0.89 # 2 # 280 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_1 - 93 HTH_18 PF12833.2 81 3.5e-06 16.3 0.0 2 2 0.061 0.42 0.0 0.0 18 29 60 71 53 87 0.60 # 2 # 280 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_1 - 93 HTH_10 PF04967.7 53 4.7e-05 12.2 0.0 1 1 1.5e-05 0.0001 11.1 0.0 21 44 21 44 18 46 0.87 # 2 # 280 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_1 - 93 HTH_31 PF13560.1 64 5.3e-10 28.6 0.0 1 1 1e-10 7.1e-10 28.2 0.0 15 59 24 67 11 74 0.87 # 2 # 280 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_1 - 93 HTH_Tnp_ISL3 PF13542.1 52 3.7e-06 15.3 0.1 1 2 1.6e-05 0.00011 10.6 0.0 29 49 25 45 12 45 0.86 # 2 # 280 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_1 - 93 HTH_Tnp_ISL3 PF13542.1 52 3.7e-06 15.3 0.1 2 2 0.0045 0.032 2.7 0.1 17 33 67 85 67 85 0.82 # 2 # 280 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_1 - 93 CENP-B_N PF04218.8 53 2.4e-06 16.2 0.0 1 2 1.8e-06 1.2e-05 13.9 0.0 26 49 27 50 18 54 0.89 # 2 # 280 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_1 - 93 CENP-B_N PF04218.8 53 2.4e-06 16.2 0.0 2 2 0.038 0.27 0.0 0.0 23 32 80 89 71 92 0.72 # 2 # 280 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_1 - 93 HTH_26 PF13443.1 63 1.3e-07 21.0 0.0 1 1 2.3e-08 1.6e-07 20.7 0.0 10 55 23 67 14 75 0.90 # 2 # 280 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_1 - 93 HTH_11 PF08279.7 55 1e-06 17.6 0.0 1 1 3.8e-07 2.7e-06 16.2 0.0 11 36 19 44 12 46 0.83 # 2 # 280 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_1 - 93 MarR_2 PF12802.2 62 4e-08 22.1 0.0 1 1 1.2e-08 8.4e-08 21.1 0.0 15 43 18 45 8 46 0.81 # 2 # 280 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_1 - 93 LacI PF00356.16 46 3e-08 22.4 0.1 1 1 7.2e-09 5e-08 21.7 0.1 4 34 28 58 27 64 0.85 # 2 # 280 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/cacb3883-0eb4-4400-90c2-2e7bb807850f # Target file: checkm_output/bins/pm941/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm941/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/cacb3883-0eb4-4400-90c2-2e7bb807850f checkm_output/bins/pm941/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:18:48 2017 # [ok]