# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 340 HTH_DeoR PF08220.7 57 5e-05 11.6 0.0 1 2 0.038 0.19 0.1 0.0 11 28 144 161 141 170 0.86 # 98 # 1117 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 340 HTH_DeoR PF08220.7 57 5e-05 11.6 0.0 2 2 0.0001 0.00051 8.3 0.0 16 33 305 322 303 327 0.92 # 98 # 1117 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 340 HTH_38 PF13936.1 44 1e-05 13.8 0.1 1 2 0.044 0.22 -0.1 0.0 17 35 144 162 139 174 0.61 # 98 # 1117 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 340 HTH_38 PF13936.1 44 1e-05 13.8 0.1 2 2 2.4e-05 0.00012 10.4 0.0 9 40 292 323 289 325 0.90 # 98 # 1117 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 340 Sigma70_r4_2 PF08281.7 54 1.9e-08 22.5 0.1 1 2 0.013 0.065 1.5 0.0 23 41 144 162 139 166 0.84 # 98 # 1117 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 340 Sigma70_r4_2 PF08281.7 54 1.9e-08 22.5 0.1 2 2 8.7e-08 4.3e-07 18.1 0.0 14 47 292 324 290 325 0.94 # 98 # 1117 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 340 Terminase_5 PF06056.7 58 1.5e-06 16.5 0.0 1 1 9.2e-07 4.6e-06 14.9 0.0 1 36 291 326 291 331 0.92 # 98 # 1117 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 340 HTH_Tnp_1 PF01527.15 76 2e-05 13.3 0.1 1 1 1.1e-05 5.7e-05 11.8 0.1 9 44 290 324 283 333 0.87 # 98 # 1117 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 340 GerE PF00196.14 58 8e-07 17.1 0.0 1 2 0.0013 0.0067 4.6 0.0 8 32 137 161 136 163 0.95 # 98 # 1117 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 340 GerE PF00196.14 58 8e-07 17.1 0.0 2 2 2.6e-05 0.00013 10.0 0.0 11 36 296 321 290 326 0.86 # 98 # 1117 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 340 Sigma70_r4 PF04545.11 50 5e-06 14.6 0.0 1 2 0.00024 0.0012 7.0 0.0 9 35 137 162 136 170 0.77 # 98 # 1117 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 340 Sigma70_r4 PF04545.11 50 5e-06 14.6 0.0 2 2 0.00086 0.0043 5.2 0.0 10 39 294 322 290 326 0.79 # 98 # 1117 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 340 HTH_23 PF13384.1 50 5.4e-11 30.7 0.2 1 1 5.8e-11 2.9e-10 28.4 0.0 4 38 290 324 287 328 0.93 # 98 # 1117 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 340 HTH_29 PF13551.1 112 1.4e-05 14.0 1.4 1 2 0.053 0.26 0.2 0.1 25 71 241 288 229 300 0.72 # 98 # 1117 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 340 HTH_29 PF13551.1 112 1.4e-05 14.0 1.4 2 2 1.9e-05 9.3e-05 11.3 0.1 1 34 293 325 293 330 0.84 # 98 # 1117 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 340 HTH_28 PF13518.1 52 1.8e-07 19.9 1.0 1 1 7e-08 3.5e-07 19.0 0.1 1 34 292 325 292 330 0.93 # 98 # 1117 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 340 HTH_31 PF13560.1 64 4.5e-05 12.4 1.2 1 2 0.043 0.21 0.6 0.1 46 62 149 165 141 167 0.74 # 98 # 1117 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 340 HTH_31 PF13560.1 64 4.5e-05 12.4 1.2 2 2 6.6e-05 0.00033 9.6 0.2 10 35 293 324 257 330 0.90 # 98 # 1117 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 340 HTH_Tnp_ISL3 PF13542.1 52 2.4e-05 12.3 0.5 1 1 1.5e-05 7.5e-05 10.7 0.3 28 49 304 325 293 327 0.84 # 98 # 1117 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 340 HTH_17 PF12728.2 51 7.6e-08 21.3 0.3 1 3 0.0011 0.0053 5.8 0.0 2 16 148 162 147 165 0.91 # 98 # 1117 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 340 HTH_17 PF12728.2 51 7.6e-08 21.3 0.3 2 3 0.055 0.27 0.3 0.0 13 25 182 194 177 198 0.84 # 98 # 1117 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 340 HTH_17 PF12728.2 51 7.6e-08 21.3 0.3 3 3 3.1e-05 0.00016 10.7 0.0 3 24 305 326 304 336 0.90 # 98 # 1117 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 340 HTH_11 PF08279.7 55 8.7e-06 14.1 0.1 1 2 0.0026 0.013 4.0 0.0 13 28 144 160 136 169 0.84 # 98 # 1117 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 340 HTH_11 PF08279.7 55 8.7e-06 14.1 0.1 2 2 0.00022 0.0011 7.4 0.0 17 34 305 322 302 326 0.89 # 98 # 1117 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 340 Sigma70_ECF PF07638.6 185 2.1e-05 12.9 0.1 1 2 0.052 0.26 -0.4 0.0 151 176 147 175 138 184 0.74 # 98 # 1117 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 340 Sigma70_ECF PF07638.6 185 2.1e-05 12.9 0.1 2 2 2.1e-05 0.0001 10.6 0.1 135 181 288 333 264 336 0.80 # 98 # 1117 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/f33d74c7-64c1-45cc-9c08-c9009249c42f # Target file: checkm_output/bins/pm94/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm94/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f33d74c7-64c1-45cc-9c08-c9009249c42f checkm_output/bins/pm94/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:18:48 2017 # [ok]