# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_48 - 383 ABC_tran PF00005.22 137 2.2e-05 17.6 0.1 1 1 1.3e-06 6e-05 16.2 0.0 15 34 161 180 150 197 0.87 # 41559 # 42707 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_64 - 503 ABC_tran PF00005.22 137 0.00045 13.3 0.0 1 1 1.7e-05 0.00081 12.5 0.0 13 37 231 255 226 364 0.91 # 55168 # 56676 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_80 - 197 TIGR01173 TIGR01173 452 2.6e-10 32.1 1.7 1 2 0.00011 0.01 7.1 0.1 247 281 98 132 68 140 0.73 # 69145 # 69735 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.399 1_80 - 197 TIGR01173 TIGR01173 452 2.6e-10 32.1 1.7 2 2 4e-10 3.7e-08 25.0 0.1 392 443 140 192 134 196 0.91 # 69145 # 69735 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.399 1_84 - 424 HHH_5 PF14520.1 60 0.0003 13.8 0.0 1 1 8.6e-06 0.0008 12.4 0.0 9 37 184 212 172 225 0.92 # 71760 # 73031 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_48 - 383 Sigma54_activat PF00158.21 168 0.0006 12.1 0.0 1 1 1.2e-05 0.0011 11.2 0.0 26 46 161 181 145 194 0.82 # 41559 # 42707 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_48 - 383 FtsK_SpoIIIE PF01580.13 205 0.00058 12.2 0.0 1 1 1e-05 0.00097 11.4 0.0 40 63 159 182 122 227 0.87 # 41559 # 42707 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_83 - 209 MobB PF03205.9 140 5.3e-05 15.8 0.1 1 1 1.6e-06 0.00015 14.3 0.0 10 42 11 41 1 46 0.79 # 70946 # 71572 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_16 - 227 HTH_39 PF14090.1 70 2.1e-07 23.2 0.0 1 1 6.4e-09 6e-07 21.7 0.0 8 67 167 226 162 226 0.91 # 14288 # 14968 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.532 1_92 - 199 TilS_C PF11734.3 74 0.00012 14.2 0.0 1 1 3.8e-06 0.00035 12.6 0.0 29 46 7 24 6 28 0.87 # 77560 # 78156 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_64 - 503 AAA_19 PF13245.1 76 8.6e-05 15.1 0.7 1 1 4.3e-06 0.0002 13.9 0.1 5 36 223 255 219 272 0.71 # 55168 # 56676 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_83 - 209 AAA_19 PF13245.1 76 0.00027 13.5 0.1 1 2 0.00019 0.009 8.6 0.0 20 48 11 35 9 44 0.84 # 70946 # 71572 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_83 - 209 AAA_19 PF13245.1 76 0.00027 13.5 0.1 2 2 0.021 0.99 2.1 0.0 42 63 135 158 118 184 0.76 # 70946 # 71572 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_83 - 209 CbiA PF01656.18 195 1.6e-22 72.6 0.0 1 1 3.1e-24 2.9e-22 71.8 0.0 1 158 3 141 3 179 0.75 # 70946 # 71572 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_83 - 209 YhjQ PF06564.7 244 2.2e-05 16.7 0.3 1 2 1.8e-06 0.00017 13.8 0.3 4 38 3 37 1 50 0.89 # 70946 # 71572 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_83 - 209 YhjQ PF06564.7 244 2.2e-05 16.7 0.3 2 2 0.029 2.7 0.0 0.0 108 144 69 103 44 113 0.78 # 70946 # 71572 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_48 - 383 AAA_23 PF13476.1 202 2.5e-05 17.5 0.1 1 1 1.1e-06 5.2e-05 16.4 0.0 20 40 158 178 144 205 0.85 # 41559 # 42707 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_64 - 503 AAA_23 PF13476.1 202 0.00033 13.8 0.1 1 1 1.3e-05 0.0006 12.9 0.1 20 37 230 247 218 264 0.90 # 55168 # 56676 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_64 - 503 AAA_30 PF13604.1 196 2.4e-07 23.3 0.0 1 1 4.9e-09 4.6e-07 22.4 0.0 2 45 213 256 212 263 0.91 # 55168 # 56676 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_92 - 199 TIGR02433 TIGR02433 47 0.00072 11.6 0.0 1 1 7.7e-06 0.00072 11.6 0.0 30 45 8 23 7 25 0.91 # 77560 # 78156 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_11 - 767 TraG-D_C PF12696.2 128 1.8e-08 27.1 4.1 1 2 2.2e-10 2e-08 27.0 0.2 1 86 437 522 437 558 0.83 # 8195 # 10495 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_11 - 767 TraG-D_C PF12696.2 128 1.8e-08 27.1 4.1 2 2 0.064 5.9 -0.4 0.0 71 95 622 645 614 670 0.60 # 8195 # 10495 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_83 - 209 MipZ PF09140.6 261 1.7e-21 69.2 0.5 1 2 1.2e-12 1.1e-10 33.8 0.0 2 53 2 52 1 60 0.89 # 70946 # 71572 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_83 - 209 MipZ PF09140.6 261 1.7e-21 69.2 0.5 2 2 1.6e-12 1.5e-10 33.4 0.0 87 140 65 118 58 128 0.92 # 70946 # 71572 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_35 - 421 DDE_Tnp_1 PF01609.16 213 7.4e-35 113.2 0.2 1 1 1.7e-36 1.6e-34 112.1 0.0 6 213 128 362 123 362 0.96 # 29431 # 30693 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_3 - 306 Trp_repressor PF01371.14 88 9.3e-05 15.2 1.8 1 2 0.0003 0.028 7.2 0.4 3 39 195 237 193 267 0.70 # 1409 # 2326 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.521 1_3 - 306 Trp_repressor PF01371.14 88 9.3e-05 15.2 1.8 2 2 0.00046 0.043 6.6 0.0 35 65 269 299 264 304 0.90 # 1409 # 2326 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.521 1_80 - 197 TIGR00965 TIGR00965 271 0.00025 13.0 2.9 1 1 3.5e-06 0.00033 12.6 2.9 121 204 82 169 65 184 0.82 # 69145 # 69735 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.399 1_83 - 209 TIGR00064 TIGR00064 279 0.00021 13.0 0.5 1 2 0.00073 0.068 4.8 0.1 89 116 11 38 1 45 0.88 # 70946 # 71572 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_83 - 209 TIGR00064 TIGR00064 279 0.00021 13.0 0.5 2 2 0.00024 0.023 6.4 0.0 153 175 68 90 60 99 0.82 # 70946 # 71572 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_48 - 383 AAA_16 PF13191.1 185 8.4e-06 18.7 0.1 1 1 7e-07 3.2e-05 16.7 0.0 25 57 158 193 148 326 0.80 # 41559 # 42707 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_64 - 503 AAA_16 PF13191.1 185 0.00011 15.0 0.0 1 1 5.1e-06 0.00024 13.9 0.0 21 51 226 256 215 338 0.85 # 55168 # 56676 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_64 - 503 AAA_22 PF13401.1 131 5.4e-06 19.4 0.0 1 1 2.3e-07 1.1e-05 18.4 0.0 4 49 229 281 226 349 0.82 # 55168 # 56676 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_48 - 383 AAA_22 PF13401.1 131 7.5e-06 18.9 0.0 1 1 3.1e-07 1.4e-05 18.0 0.0 3 44 156 194 153 233 0.76 # 41559 # 42707 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_48 - 383 TIGR00362 TIGR00362 437 0.00083 10.9 0.0 1 1 1.5e-05 0.0014 10.2 0.0 141 171 161 191 155 199 0.93 # 41559 # 42707 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_7 - 283 Methyltransf_27 PF13708.1 194 5.3e-67 217.9 0.0 1 1 8e-69 7.4e-67 217.4 0.0 2 194 85 278 84 278 0.96 # 3408 # 4256 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_48 - 383 AAA_29 PF13555.1 62 2e-05 16.9 0.0 1 1 1.1e-06 5e-05 15.6 0.0 25 43 159 177 149 185 0.84 # 41559 # 42707 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_64 - 503 AAA_29 PF13555.1 62 2.6e-05 16.6 0.0 1 1 1.3e-06 6.2e-05 15.3 0.0 20 40 227 246 218 260 0.84 # 55168 # 56676 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_83 - 209 SRP54 PF00448.17 196 2.3e-07 23.2 0.1 1 1 1.5e-08 1.4e-06 20.7 0.1 4 98 2 91 1 134 0.80 # 70946 # 71572 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_5 - 84 HTH_3 PF01381.17 55 2.6e-05 16.9 0.0 1 2 1e-06 9.5e-05 15.1 0.0 1 34 6 39 6 45 0.90 # 2577 # 2828 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_5 - 84 HTH_3 PF01381.17 55 2.6e-05 16.9 0.0 2 2 0.083 7.7 -0.7 0.0 39 52 67 80 65 83 0.66 # 2577 # 2828 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_35 - 421 DDE_Tnp_1_4 PF13701.1 449 3e-27 87.6 3.5 1 2 0.0052 0.48 1.2 0.0 11 42 5 36 3 62 0.72 # 29431 # 30693 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_35 - 421 DDE_Tnp_1_4 PF13701.1 449 3e-27 87.6 3.5 2 2 1.5e-28 1.4e-26 85.4 2.2 137 438 122 418 41 420 0.82 # 29431 # 30693 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_5 - 84 HTH_23 PF13384.1 50 3.3e-05 16.3 0.3 1 2 3.5e-06 0.00033 13.2 0.1 17 33 14 30 6 38 0.86 # 2577 # 2828 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_5 - 84 HTH_23 PF13384.1 50 3.3e-05 16.3 0.3 2 2 0.024 2.2 1.0 0.0 5 22 63 82 59 83 0.75 # 2577 # 2828 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_83 - 209 Fer4_NifH PF00142.13 273 6.9e-05 14.9 0.2 1 1 2.3e-06 0.00021 13.3 0.0 8 38 9 39 2 46 0.89 # 70946 # 71572 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_3 - 306 HTH_7 PF02796.10 45 0.00037 13.2 0.0 1 1 9e-06 0.00083 12.1 0.0 9 41 271 303 265 305 0.85 # 1409 # 2326 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.521 1_5 - 84 HTH_19 PF12844.2 64 7.3e-05 15.6 0.0 1 1 1.2e-06 0.00011 15.1 0.0 7 53 9 56 5 67 0.87 # 2577 # 2828 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_5 - 84 DUF1870 PF08965.5 118 0.00027 13.4 1.2 1 1 3.7e-06 0.00035 13.1 1.2 1 75 1 78 1 81 0.69 # 2577 # 2828 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_48 - 383 NB-ARC PF00931.17 287 0.0005 11.7 0.0 1 1 1.1e-05 0.001 10.8 0.0 18 49 156 185 145 193 0.79 # 41559 # 42707 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_3 - 306 HTH_29 PF13551.1 112 0.0005 13.1 0.1 1 2 0.0015 0.14 5.2 0.0 17 59 232 274 224 280 0.88 # 1409 # 2326 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.521 1_3 - 306 HTH_29 PF13551.1 112 0.0005 13.1 0.1 2 2 0.0013 0.12 5.4 0.0 8 29 280 300 275 305 0.82 # 1409 # 2326 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.521 1_4 - 53 UBA PF00627.26 37 0.00063 12.5 0.0 1 1 1.1e-05 0.0011 11.7 0.0 6 22 20 36 15 36 0.87 # 2388 # 2546 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_48 - 383 PhoH PF02562.11 205 0.00012 14.2 0.0 1 1 2.3e-06 0.00021 13.3 0.0 15 60 153 198 141 230 0.86 # 41559 # 42707 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_11 - 767 TrwB_AAD_bind PF10412.4 386 5.2e-06 18.0 0.2 1 2 0.00041 0.038 5.3 0.0 11 32 132 153 126 164 0.80 # 8195 # 10495 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_11 - 767 TrwB_AAD_bind PF10412.4 386 5.2e-06 18.0 0.2 2 2 1.4e-05 0.0013 10.1 0.1 260 332 452 525 425 578 0.76 # 8195 # 10495 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_83 - 209 TIGR01968 TIGR01968 261 1.6e-11 36.5 0.8 1 2 6.4e-11 5.9e-09 28.1 0.5 3 39 2 38 1 42 0.97 # 70946 # 71572 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_83 - 209 TIGR01968 TIGR01968 261 1.6e-11 36.5 0.8 2 2 0.00018 0.017 6.9 0.0 100 135 65 100 60 149 0.83 # 70946 # 71572 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_48 - 383 AAA_18 PF13238.1 129 6.1e-06 19.4 0.0 1 1 2.3e-07 1.1e-05 18.6 0.0 2 42 161 197 161 242 0.78 # 41559 # 42707 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_64 - 503 AAA_18 PF13238.1 129 0.00067 12.8 0.4 1 1 3.4e-05 0.0016 11.6 0.2 1 18 232 249 232 267 0.87 # 55168 # 56676 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_84 - 424 IMS_HHH PF11798.3 32 4.4e-09 28.9 0.3 1 1 1.3e-10 1.2e-08 27.5 0.3 3 32 172 201 170 201 0.93 # 71760 # 73031 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_48 - 383 DUF87 PF01935.12 229 3.3e-05 16.6 0.0 1 1 1.3e-06 6e-05 15.7 0.0 28 51 162 186 161 192 0.83 # 41559 # 42707 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_11 - 767 DUF87 PF01935.12 229 0.00087 11.9 0.1 1 2 0.00046 0.022 7.4 0.0 16 40 130 153 120 168 0.80 # 8195 # 10495 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_11 - 767 DUF87 PF01935.12 229 0.00087 11.9 0.1 2 2 0.022 1 1.8 0.1 112 174 641 702 619 734 0.67 # 8195 # 10495 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_5 - 84 HTH_31 PF13560.1 64 5.9e-07 22.5 2.0 1 2 1e-08 9.3e-07 21.9 1.2 3 43 3 43 2 57 0.86 # 2577 # 2828 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_5 - 84 HTH_31 PF13560.1 64 5.9e-07 22.5 2.0 2 2 0.1 9.3 -0.6 0.0 17 34 65 72 44 82 0.58 # 2577 # 2828 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_64 - 503 T2SE PF00437.15 272 1.7e-37 121.6 0.0 1 1 6.2e-39 2.9e-37 120.8 0.0 66 269 161 378 142 380 0.86 # 55168 # 56676 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_48 - 383 T2SE PF00437.15 272 3.1e-35 114.1 0.0 1 1 1e-36 4.6e-35 113.6 0.0 109 261 142 292 23 309 0.78 # 41559 # 42707 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_48 - 383 NACHT PF05729.7 166 0.00091 11.7 0.0 1 1 1.8e-05 0.0017 10.8 0.0 4 27 161 184 159 193 0.84 # 41559 # 42707 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_83 - 209 AAA_17 PF13207.1 121 1.4e-05 18.7 0.0 1 1 1.2e-06 3.8e-05 17.3 0.0 9 77 11 84 9 205 0.75 # 70946 # 71572 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_48 - 383 AAA_17 PF13207.1 121 0.00011 15.9 0.0 1 1 8.3e-06 0.00026 14.7 0.0 3 39 161 200 161 251 0.72 # 41559 # 42707 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_64 - 503 AAA_17 PF13207.1 121 0.00014 15.5 0.2 1 1 1.3e-05 0.00041 14.0 0.1 1 32 231 264 231 353 0.79 # 55168 # 56676 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_48 - 383 AAA_25 PF13481.1 194 4.5e-07 22.2 0.0 1 1 1.6e-08 7.2e-07 21.6 0.0 21 73 146 196 127 236 0.80 # 41559 # 42707 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_83 - 209 AAA_25 PF13481.1 194 0.00011 14.4 0.1 1 1 6.2e-06 0.00029 13.1 0.0 42 87 10 44 3 90 0.78 # 70946 # 71572 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_83 - 209 VirC1 PF07015.6 231 3.1e-09 29.0 0.0 1 1 7.1e-11 6.6e-09 27.9 0.0 3 172 2 164 1 206 0.74 # 70946 # 71572 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_48 - 383 AAA_33 PF13671.1 143 0.00046 12.9 0.1 1 1 1.8e-05 0.0016 11.1 0.0 3 21 161 179 159 194 0.90 # 41559 # 42707 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_48 - 383 RNA_helicase PF00910.17 107 3.8e-05 16.7 0.0 1 1 8.3e-07 7.7e-05 15.7 0.0 2 28 161 187 160 202 0.83 # 41559 # 42707 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_76 - 214 TIGR00922 TIGR00922 172 0.00026 13.4 0.0 1 1 3.3e-06 0.00031 13.1 0.0 54 104 105 155 56 176 0.87 # 65336 # 65977 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_28 - 1015 AAA_10 PF12846.2 304 1.7e-31 102.5 0.0 1 1 1.4e-32 3.3e-31 101.6 0.0 8 303 502 898 498 899 0.89 # 22917 # 25961 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.567 1_11 - 767 AAA_10 PF12846.2 304 1.1e-06 21.0 0.1 1 1 1.1e-07 2.4e-06 19.9 0.1 2 292 137 506 136 516 0.72 # 8195 # 10495 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_48 - 383 AAA_10 PF12846.2 304 4.8e-06 18.9 0.0 1 2 3.8e-06 8.8e-05 14.8 0.0 3 27 159 183 157 197 0.87 # 41559 # 42707 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_48 - 383 AAA_10 PF12846.2 304 4.8e-06 18.9 0.0 2 2 0.036 0.85 1.7 0.0 193 248 290 348 259 352 0.76 # 41559 # 42707 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_83 - 209 AAA_10 PF12846.2 304 0.00015 14.1 0.0 1 1 1e-05 0.00023 13.4 0.0 11 39 11 39 3 66 0.90 # 70946 # 71572 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_83 - 209 ArsA_ATPase PF02374.10 305 4e-08 25.4 0.9 1 3 1.2e-09 1.1e-07 24.0 0.1 3 48 3 48 1 69 0.85 # 70946 # 71572 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_83 - 209 ArsA_ATPase PF02374.10 305 4e-08 25.4 0.9 2 3 0.053 5 -1.2 0.0 121 135 69 85 47 86 0.75 # 70946 # 71572 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_83 - 209 ArsA_ATPase PF02374.10 305 4e-08 25.4 0.9 3 3 0.075 7 -1.7 0.0 205 234 132 161 118 202 0.65 # 70946 # 71572 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_83 - 209 AAA_31 PF13614.1 157 4e-06 19.6 0.0 1 2 2.5e-07 2.3e-05 17.1 0.0 2 42 2 42 1 55 0.88 # 70946 # 71572 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_83 - 209 AAA_31 PF13614.1 157 4e-06 19.6 0.0 2 2 0.055 5.1 -0.2 0.0 109 127 68 86 62 113 0.68 # 70946 # 71572 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_3 - 306 Yae1_N PF09811.4 39 0.0014 11.0 2.9 1 1 2.6e-05 0.0024 10.3 2.9 3 18 253 268 252 271 0.83 # 1409 # 2326 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.521 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/62493273-3a11-4b1e-a7be-1720a86fc7c7 # Target file: checkm_output/bins/pm901/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm901/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/62493273-3a11-4b1e-a7be-1720a86fc7c7 checkm_output/bins/pm901/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:17:41 2017 # [ok]