# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 79 HTH_DeoR PF08220.7 57 9.7e-07 15.8 0.0 1 1 8.5e-07 1.7e-06 15.0 0.0 21 47 1 27 1 28 0.95 # 1286 # 1522 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 1_2 - 79 HTH_38 PF13936.1 44 4.4e-06 13.7 0.0 1 1 3.6e-06 7.3e-06 13.0 0.0 27 41 1 15 1 16 0.93 # 1286 # 1522 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 1_2 - 79 MarR PF01047.17 59 8.8e-07 16.1 0.0 1 1 8.8e-07 1.8e-06 15.1 0.0 24 49 1 26 1 29 0.93 # 1286 # 1522 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 1_2 - 79 GntR PF00392.16 64 2.1e-06 14.6 0.0 1 1 1.5e-06 2.9e-06 14.2 0.0 31 58 1 28 1 33 0.91 # 1286 # 1522 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 1_2 - 79 HTH_3 PF01381.17 55 2.2e-06 15.0 0.0 1 1 1.6e-06 3.1e-06 14.5 0.0 16 31 1 16 1 23 0.92 # 1286 # 1522 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 1_2 - 79 HTH_23 PF13384.1 50 1.4e-07 18.6 0.0 1 1 1.6e-07 3.3e-07 17.4 0.0 24 39 1 16 1 24 0.90 # 1286 # 1522 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 1_2 - 79 HTH_28 PF13518.1 52 8.8e-08 19.6 0.0 1 1 6.5e-08 1.3e-07 19.1 0.0 19 44 1 24 1 32 0.80 # 1286 # 1522 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 1_2 - 79 HTH_36 PF13730.1 55 5.7e-07 17.1 0.1 1 1 5.3e-07 1.1e-06 16.3 0.1 32 53 1 22 1 24 0.91 # 1286 # 1522 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 1_2 - 79 HTH_17 PF12728.2 51 9e-07 16.6 0.0 1 1 7e-07 1.4e-06 16.0 0.0 8 23 1 16 1 34 0.77 # 1286 # 1522 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 1_2 - 79 HTH_11 PF08279.7 55 1.4e-07 18.6 0.0 1 1 1.2e-07 2.4e-07 17.8 0.0 22 44 1 27 1 32 0.84 # 1286 # 1522 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 1_2 - 79 TrmB PF01978.14 68 8.2e-06 13.0 0.0 1 1 6.1e-06 1.2e-05 12.4 0.0 29 58 1 30 1 42 0.83 # 1286 # 1522 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 1_2 - 79 HTH_Crp_2 PF13545.1 76 1.3e-05 12.4 0.0 1 1 9.5e-06 1.9e-05 11.9 0.0 35 58 1 24 1 32 0.91 # 1286 # 1522 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/1246d59f-343c-4d3f-af45-cf3946cc9a3b # Target file: checkm_output/bins/pm90/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm90/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1246d59f-343c-4d3f-af45-cf3946cc9a3b checkm_output/bins/pm90/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:17:34 2017 # [ok]