# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_74 - 455 KaiC PF06745.8 227 2.1e-05 16.8 0.0 1 1 4.4e-07 5.2e-05 15.5 0.0 4 66 185 253 183 279 0.85 # 56205 # 57569 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_17 - 2256 N6_Mtase PF02384.11 311 2.8e-10 32.8 0.0 1 1 3.3e-11 3.8e-09 29.1 0.0 93 249 145 291 73 296 0.76 # 15734 # 22501 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 1_74 - 455 FtsK_SpoIIIE PF01580.13 205 0.00028 13.5 0.2 1 2 5.2e-05 0.0062 9.1 0.0 36 68 204 235 179 267 0.80 # 56205 # 57569 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_74 - 455 FtsK_SpoIIIE PF01580.13 205 0.00028 13.5 0.2 2 2 0.012 1.4 1.4 0.1 71 124 319 366 313 400 0.74 # 56205 # 57569 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_17 - 2256 Helicase_C PF00271.26 78 7.8e-09 28.5 0.0 1 1 1.6e-10 1.9e-08 27.2 0.0 16 78 1454 1517 1435 1517 0.86 # 15734 # 22501 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 1_91 - 334 HTH_38 PF13936.1 44 8.5e-05 15.3 0.3 1 2 0.052 6.2 -0.3 0.0 19 30 147 158 130 160 0.75 # 71929 # 72930 # 1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.440 1_91 - 334 HTH_38 PF13936.1 44 8.5e-05 15.3 0.3 2 2 3.6e-06 0.00043 13.0 0.3 12 34 157 179 151 187 0.86 # 71929 # 72930 # 1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.440 1_91 - 334 MarR PF01047.17 59 0.00069 12.5 0.0 1 1 1.5e-05 0.0017 11.2 0.0 15 38 163 186 157 188 0.92 # 71929 # 72930 # 1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.440 1_90 - 399 CbiA PF01656.18 195 1.2e-20 66.8 0.0 1 1 1.8e-22 2.2e-20 66.0 0.0 1 144 111 294 111 322 0.75 # 70716 # 71912 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_78 - 755 MethyltransfD12 PF02086.10 260 2.7e-56 184.0 0.0 1 1 3.1e-58 3.6e-56 183.6 0.0 1 251 493 727 493 736 0.93 # 60198 # 62462 # -1 # ID=1_78;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 1_91 - 334 Sigma70_r4_2 PF08281.7 54 0.00022 13.9 0.1 1 1 5e-06 0.00059 12.5 0.1 25 50 164 189 158 191 0.91 # 71929 # 72930 # 1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.440 1_88 - 287 Rep_3 PF01051.16 222 1.5e-28 93.0 0.0 1 1 1.7e-30 2e-28 92.6 0.0 2 214 19 270 18 276 0.85 # 69298 # 70158 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_55 - 87 zf-ribbon_3 PF13248.1 26 0.00012 14.4 0.2 1 1 1.8e-06 0.00022 13.6 0.2 17 26 67 76 57 76 0.87 # 43107 # 43367 # -1 # ID=1_55;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.452 1_72 - 325 Glyco_trans_1_2 PF13524.1 92 9.3e-05 15.8 0.0 1 1 3.1e-06 0.00036 14.0 0.0 6 69 237 301 228 314 0.74 # 54932 # 55906 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.489 1_17 - 2256 Methyltransf_26 PF13659.1 117 1.8e-09 30.8 0.1 1 1 2.9e-10 1.7e-08 27.7 0.0 5 116 116 225 113 226 0.79 # 15734 # 22501 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 1_78 - 755 Methyltransf_26 PF13659.1 117 8.4e-06 19.0 0.0 1 1 4.3e-07 2.6e-05 17.4 0.0 1 83 511 670 511 720 0.70 # 60198 # 62462 # -1 # ID=1_78;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 1_74 - 455 TIGR00416 TIGR00416 454 1.4e-05 16.8 0.1 1 1 2.2e-07 2.6e-05 15.9 0.1 58 218 171 364 137 370 0.80 # 56205 # 57569 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_20 - 436 CIDE-N PF02017.10 78 0.00099 12.1 0.6 1 3 0.031 3.6 0.6 0.0 23 39 36 52 28 73 0.80 # 23272 # 24579 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.344 1_20 - 436 CIDE-N PF02017.10 78 0.00099 12.1 0.6 2 3 0.00034 0.04 6.9 0.1 51 67 167 183 165 187 0.92 # 23272 # 24579 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.344 1_20 - 436 CIDE-N PF02017.10 78 0.00099 12.1 0.6 3 3 0.073 8.6 -0.6 0.0 48 64 254 268 253 273 0.80 # 23272 # 24579 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.344 1_28 - 495 AAA_30 PF13604.1 196 4.4e-05 16.3 0.0 1 1 3.7e-06 0.00044 13.0 0.0 5 127 37 189 35 194 0.70 # 29698 # 31182 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.478 1_61 - 226 TIGR00668 TIGR00668 279 4.9e-17 55.0 0.0 1 2 9.3e-18 1.1e-15 50.6 0.0 4 72 19 85 16 155 0.88 # 47136 # 47813 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.487 1_61 - 226 TIGR00668 TIGR00668 279 4.9e-17 55.0 0.0 2 2 0.004 0.47 2.6 0.0 216 257 178 218 170 222 0.75 # 47136 # 47813 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.487 1_90 - 399 MipZ PF09140.6 261 7.2e-09 28.2 0.1 1 2 4.6e-05 0.0054 8.9 0.0 1 51 109 164 109 187 0.77 # 70716 # 71912 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_90 - 399 MipZ PF09140.6 261 7.2e-09 28.2 0.1 2 2 1.4e-07 1.7e-05 17.2 0.0 82 135 228 281 213 289 0.86 # 70716 # 71912 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_78 - 755 UPF0020 PF01170.13 180 0.00024 13.9 0.0 1 2 0.0078 0.93 2.2 0.0 28 50 510 532 507 568 0.86 # 60198 # 62462 # -1 # ID=1_78;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 1_78 - 755 UPF0020 PF01170.13 180 0.00024 13.9 0.0 2 2 8.1e-05 0.0095 8.6 0.0 86 116 637 667 632 673 0.91 # 60198 # 62462 # -1 # ID=1_78;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 1_83 - 421 DDE_Tnp_1 PF01609.16 213 9.4e-35 113.2 0.2 1 1 1.7e-36 2e-34 112.1 0.0 6 213 128 362 123 362 0.96 # 64943 # 66205 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_7 - 640 DivIC PF04977.10 80 0.0059 9.3 12.5 1 2 0.013 1.5 1.6 3.9 17 55 205 243 193 250 0.62 # 3737 # 5656 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_7 - 640 DivIC PF04977.10 80 0.0059 9.3 12.5 2 2 1e-05 0.0012 11.5 1.9 20 57 250 289 246 291 0.85 # 3737 # 5656 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_91 - 334 Trp_repressor PF01371.14 88 0.00031 13.8 0.7 1 1 7.4e-06 0.00087 12.4 0.1 40 69 157 185 124 194 0.84 # 71929 # 72930 # 1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.440 1_91 - 334 KorB PF08535.5 93 4.7e-05 16.7 0.0 1 1 3.8e-06 0.00045 13.6 0.0 2 38 164 200 163 213 0.91 # 71929 # 72930 # 1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.440 1_54 - 215 zf-C4_Topoisom PF01396.14 39 0.00041 13.0 1.0 1 1 1e-05 0.0012 11.5 1.0 3 31 185 210 184 213 0.92 # 42470 # 43114 # -1 # ID=1_54;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_17 - 2256 Eco57I PF07669.6 106 4.6e-05 16.9 0.0 1 1 1.6e-06 0.00019 14.9 0.0 3 101 174 271 172 276 0.87 # 15734 # 22501 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 1_72 - 325 Glyco_trans_1_4 PF13692.1 135 2e-06 21.2 0.1 1 2 0.035 4.1 0.7 0.0 88 132 19 61 2 64 0.69 # 54932 # 55906 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.489 1_72 - 325 Glyco_trans_1_4 PF13692.1 135 2e-06 21.2 0.1 2 2 1.8e-07 2.1e-05 17.8 0.0 54 131 208 291 184 296 0.71 # 54932 # 55906 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.489 1_99 - 270 HTH_AraC PF00165.18 42 0.00016 14.7 0.0 1 1 3.8e-06 0.00045 13.2 0.0 14 37 50 73 50 76 0.91 # 79225 # 80034 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.457 1_111 - 279 HI0933_like PF03486.9 409 0.00084 11.0 0.0 1 1 1e-05 0.0012 10.4 0.0 60 124 27 90 19 110 0.79 # 91336 # 92172 # 1 # ID=1_111;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.458 1_83 - 421 DDE_Tnp_1_4 PF13701.1 449 3.8e-27 87.6 3.5 1 2 0.0052 0.61 1.2 0.0 11 42 5 36 3 62 0.72 # 64943 # 66205 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_83 - 421 DDE_Tnp_1_4 PF13701.1 449 3.8e-27 87.6 3.5 2 2 1.5e-28 1.7e-26 85.4 2.2 137 438 122 418 41 420 0.82 # 64943 # 66205 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_29 - 398 HTH_23 PF13384.1 50 1.4e-06 21.0 3.7 1 2 1.9e-07 7.3e-06 18.7 0.0 10 43 10 44 3 50 0.89 # 31182 # 32375 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_29 - 398 HTH_23 PF13384.1 50 1.4e-06 21.0 3.7 2 2 0.044 1.7 1.6 0.1 32 45 232 245 231 250 0.82 # 31182 # 32375 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_91 - 334 HTH_23 PF13384.1 50 0.00023 14.0 0.0 1 1 2.2e-05 0.00085 12.2 0.0 9 45 157 191 156 196 0.84 # 71929 # 72930 # 1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.440 1_2 - 187 HTH_23 PF13384.1 50 0.0004 13.2 1.7 1 1 1.5e-05 0.00058 12.7 0.0 4 36 145 177 142 179 0.88 # 1341 # 1901 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.488 1_2 - 187 HTH_7 PF02796.10 45 2.6e-19 62.0 0.3 1 1 7.7e-21 9.1e-19 60.3 0.1 1 44 138 181 138 182 0.98 # 1341 # 1901 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.488 1_47 - 66 zinc_ribbon_4 PF13717.1 36 0.00012 15.0 4.4 1 2 4.1e-05 0.0049 9.8 0.1 28 35 17 24 13 25 0.81 # 40041 # 40238 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.389 1_47 - 66 zinc_ribbon_4 PF13717.1 36 0.00012 15.0 4.4 2 2 0.00061 0.072 6.0 1.3 28 36 52 60 46 60 0.80 # 40041 # 40238 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.389 1_29 - 398 HTH_29 PF13551.1 112 2.4e-06 20.9 0.1 1 2 2.3e-07 2.8e-05 17.4 0.0 5 75 11 75 7 100 0.75 # 31182 # 32375 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_29 - 398 HTH_29 PF13551.1 112 2.4e-06 20.9 0.1 2 2 0.07 8.3 -0.2 0.0 34 87 239 279 212 290 0.52 # 31182 # 32375 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_17 - 2256 SNF2_N PF00176.18 299 8.6e-18 57.2 0.0 1 1 1.7e-19 2.1e-17 56.0 0.0 27 294 849 1263 835 1268 0.85 # 15734 # 22501 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 1_90 - 399 TIGR01968 TIGR01968 261 1.3e-06 20.7 0.0 1 2 0.00036 0.042 6.0 0.0 3 28 110 135 108 153 0.78 # 70716 # 71912 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_90 - 399 TIGR01968 TIGR01968 261 1.3e-06 20.7 0.0 2 2 5.7e-06 0.00067 11.8 0.0 102 135 235 268 225 280 0.88 # 70716 # 71912 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_72 - 325 Glycos_transf_1 PF00534.15 172 1.4e-07 24.2 0.0 1 1 1.8e-09 2.2e-07 23.6 0.0 85 159 223 296 218 310 0.83 # 54932 # 55906 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.489 1_74 - 455 AAA_35 PF14516.1 331 0.0011 10.8 0.0 1 1 1.5e-05 0.0017 10.1 0.0 28 65 203 240 194 271 0.82 # 56205 # 57569 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_29 - 398 HTH_28 PF13518.1 52 1.5e-08 27.7 0.1 1 2 1.3e-08 1.5e-06 21.3 0.0 2 39 7 45 6 57 0.87 # 31182 # 32375 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_29 - 398 HTH_28 PF13518.1 52 1.5e-08 27.7 0.1 2 2 0.0083 0.97 2.7 0.0 27 45 232 250 229 254 0.87 # 31182 # 32375 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_74 - 455 DnaB_C PF03796.10 259 2e-109 357.6 0.2 1 1 2.5e-111 2.9e-109 357.0 0.2 1 257 188 445 188 447 0.98 # 56205 # 57569 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_7 - 640 MerR-DNA-bind PF09278.6 65 0.0095 9.5 6.3 1 2 0.0093 1.1 2.9 0.0 16 57 45 86 45 93 0.88 # 3737 # 5656 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_7 - 640 MerR-DNA-bind PF09278.6 65 0.0095 9.5 6.3 2 2 0.0004 0.047 7.3 1.1 18 56 219 260 217 267 0.80 # 3737 # 5656 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_47 - 66 TFIIS_C PF01096.13 39 0.062 6.2 11.8 1 2 0.00012 0.014 8.3 0.5 2 9 16 23 15 25 0.76 # 40041 # 40238 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.389 1_47 - 66 TFIIS_C PF01096.13 39 0.062 6.2 11.8 2 2 0.002 0.24 4.3 2.6 31 39 52 60 41 60 0.77 # 40041 # 40238 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.389 1_91 - 334 HTH_24 PF13412.1 48 1.6e-07 23.8 0.5 1 2 4.3e-08 2.5e-06 20.0 0.0 14 39 162 187 158 190 0.93 # 71929 # 72930 # 1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.440 1_91 - 334 HTH_24 PF13412.1 48 1.6e-07 23.8 0.5 2 2 0.035 2.1 1.1 0.1 2 17 250 265 249 268 0.83 # 71929 # 72930 # 1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.440 1_29 - 398 HTH_24 PF13412.1 48 3.5e-05 16.3 0.0 1 1 1.6e-06 9.7e-05 14.9 0.0 12 44 13 45 11 45 0.94 # 31182 # 32375 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_7 - 640 Kinesin-relat_1 PF12711.2 86 0.002 11.7 5.3 1 2 0.004 0.48 4.1 0.5 8 42 196 230 191 236 0.81 # 3737 # 5656 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_7 - 640 Kinesin-relat_1 PF12711.2 86 0.002 11.7 5.3 2 2 0.00015 0.018 8.6 0.4 7 37 251 281 246 284 0.91 # 3737 # 5656 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_9 - 996 DUF2250 PF10007.4 93 0.00085 12.4 0.0 1 1 9.7e-05 0.011 8.8 0.0 7 76 279 348 274 350 0.94 # 6031 # 9018 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_47 - 66 PhnA_Zn_Ribbon PF08274.7 30 0.0076 9.2 10.7 1 2 0.00045 0.053 6.5 0.2 22 28 17 23 15 25 0.79 # 40041 # 40238 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.389 1_47 - 66 PhnA_Zn_Ribbon PF08274.7 30 0.0076 9.2 10.7 2 2 0.0005 0.059 6.4 3.9 22 29 52 59 51 60 0.88 # 40041 # 40238 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.389 1_28 - 495 Terminase_6 PF03237.10 384 2.1e-06 19.8 0.1 1 1 3.9e-08 4.6e-06 18.7 0.1 6 317 58 380 55 426 0.74 # 29698 # 31182 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.478 1_74 - 455 AAA_25 PF13481.1 194 1.4e-14 47.1 0.0 1 1 2.2e-16 2.7e-14 46.2 0.0 13 190 187 368 174 372 0.82 # 56205 # 57569 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_74 - 455 AAA_33 PF13671.1 143 0.001 12.1 0.2 1 3 0.088 10 -0.9 0.0 46 79 134 172 102 181 0.69 # 56205 # 57569 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_74 - 455 AAA_33 PF13671.1 143 0.001 12.1 0.2 2 3 0.00018 0.022 7.8 0.0 2 39 209 245 208 326 0.63 # 56205 # 57569 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_74 - 455 AAA_33 PF13671.1 143 0.001 12.1 0.2 3 3 0.036 4.2 0.4 0.1 88 123 350 383 331 394 0.72 # 56205 # 57569 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_78 - 755 DNA_methylase PF00145.12 335 5.1e-39 127.4 0.0 1 3 3e-25 3.6e-23 75.3 0.0 5 119 8 135 6 145 0.92 # 60198 # 62462 # -1 # ID=1_78;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 1_78 - 755 DNA_methylase PF00145.12 335 5.1e-39 127.4 0.0 2 3 1.5e-15 1.8e-13 43.4 0.0 136 308 192 406 187 415 0.57 # 60198 # 62462 # -1 # ID=1_78;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 1_78 - 755 DNA_methylase PF00145.12 335 5.1e-39 127.4 0.0 3 3 0.001 0.12 4.5 0.0 312 334 441 463 430 464 0.88 # 60198 # 62462 # -1 # ID=1_78;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 1_47 - 66 zinc_ribbon_5 PF13719.1 37 2.6e-05 16.9 3.3 1 2 1.9e-05 0.0023 10.7 0.0 28 36 17 25 13 26 0.75 # 40041 # 40238 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.389 1_47 - 66 zinc_ribbon_5 PF13719.1 37 2.6e-05 16.9 3.3 2 2 0.00051 0.06 6.2 1.2 28 36 52 60 46 61 0.80 # 40041 # 40238 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.389 1_108 - 1131 UBA_4 PF14555.1 43 0.00018 14.2 0.1 1 1 1.1e-05 0.0013 11.4 0.0 20 36 820 836 819 841 0.93 # 86158 # 89550 # 1 # ID=1_108;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.483 1_47 - 66 Zn-ribbon_8 PF09723.5 42 0.0082 9.3 12.4 1 1 0.091 11 -0.7 12.4 8 18 17 27 14 62 0.59 # 40041 # 40238 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.389 1_13 - 163 tRNA_anti-codon PF01336.20 75 0.00075 12.5 0.0 1 1 1e-05 0.0012 11.9 0.0 31 61 58 92 53 112 0.82 # 11430 # 11918 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.495 1_99 - 270 MarR_2 PF12802.2 62 0.00056 12.8 0.3 1 1 3.5e-05 0.0021 10.9 0.0 27 54 50 77 45 90 0.81 # 79225 # 80034 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.457 1_91 - 334 MarR_2 PF12802.2 62 0.00056 12.7 0.0 1 1 2.3e-05 0.0014 11.5 0.0 17 47 163 191 156 202 0.86 # 71929 # 72930 # 1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.440 1_99 - 270 HTH_Crp_2 PF13545.1 76 0.001 12.1 0.0 1 1 1.8e-05 0.0021 11.0 0.0 21 60 37 76 21 88 0.82 # 79225 # 80034 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.457 1_47 - 66 UPF0547 PF10571.4 26 3e-06 20.0 7.8 1 2 8.4e-06 0.00099 12.0 0.3 16 24 16 24 15 26 0.89 # 40041 # 40238 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.389 1_47 - 66 UPF0547 PF10571.4 26 3e-06 20.0 7.8 2 2 1.5e-05 0.0018 11.2 2.0 17 25 52 60 49 61 0.90 # 40041 # 40238 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.389 1_7 - 640 AAA_13 PF13166.1 712 0.0098 7.4 11.8 1 2 1.3e-05 0.0015 10.1 7.4 377 466 198 282 152 283 0.75 # 3737 # 5656 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_7 - 640 AAA_13 PF13166.1 712 0.0098 7.4 11.8 2 2 0.049 5.8 -1.7 0.1 368 398 563 593 512 634 0.53 # 3737 # 5656 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_90 - 399 ArsA_ATPase PF02374.10 305 0.00052 12.2 0.0 1 1 1.2e-05 0.0014 10.8 0.0 4 52 111 166 108 255 0.74 # 70716 # 71912 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_90 - 399 AAA_31 PF13614.1 157 6.3e-07 22.6 0.0 1 2 0.0009 0.053 6.6 0.0 2 63 110 176 109 222 0.75 # 70716 # 71912 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_90 - 399 AAA_31 PF13614.1 157 6.3e-07 22.6 0.0 2 2 6e-06 0.00035 13.7 0.0 108 138 235 265 231 277 0.85 # 70716 # 71912 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_74 - 455 AAA_31 PF13614.1 157 7.8e-05 15.8 0.0 1 1 3.2e-06 0.00019 14.6 0.0 5 43 210 249 208 260 0.89 # 56205 # 57569 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_13 - 163 SSB PF00436.20 104 4.2e-43 138.6 0.3 1 1 4.6e-45 5.5e-43 138.3 0.3 1 100 6 109 6 113 0.96 # 11430 # 11918 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.495 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/c0a351b1-0fe7-4b62-ad2c-7a7a3e6b1157 # Target file: checkm_output/bins/pm892/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm892/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c0a351b1-0fe7-4b62-ad2c-7a7a3e6b1157 checkm_output/bins/pm892/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:17:37 2017 # [ok]